Wall clock time and date at job start Tue Mar 31 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.50694 * 109.47223 * 119.99619 * 2 1 3 5 5 N 1.30451 * 125.99305 * 300.15282 * 4 2 1 6 6 N 1.39935 * 108.89875 * 180.26345 * 5 4 2 7 7 C 1.46500 * 125.75459 * 179.73024 * 6 5 4 8 8 C 1.34257 * 108.48953 * 359.74273 * 6 5 4 9 9 C 1.38044 * 107.42093 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41402 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99521 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00050 * 0.02562 * 10 9 8 13 13 C 1.47586 * 134.48934 * 180.02562 * 12 10 9 14 14 C 1.53949 * 86.11504 * 155.36070 * 13 12 10 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45633 * 359.87277 * 12 10 9 25 25 H 1.08999 * 109.47264 * 299.99915 * 1 2 3 26 26 H 1.09001 * 109.47314 * 60.00511 * 1 2 3 27 27 H 1.09006 * 109.46563 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47264 * 240.00085 * 2 1 3 29 29 H 1.08999 * 109.47094 * 59.99981 * 3 2 1 30 30 H 1.08997 * 109.47393 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47199 * 300.00057 * 3 2 1 32 32 H 1.09002 * 109.47062 * 270.02163 * 7 6 5 33 33 H 1.09006 * 109.46740 * 30.01859 * 7 6 5 34 34 H 1.08996 * 109.47267 * 150.01355 * 7 6 5 35 35 H 1.08005 * 126.29136 * 179.97438 * 8 6 5 36 36 H 1.08993 * 113.76952 * 41.05857 * 13 12 10 37 37 H 1.08995 * 113.86700 * 269.67206 * 13 12 10 38 38 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08995 * 113.77163 * 90.38050 * 24 12 10 41 41 H 1.09005 * 113.83876 * 318.91036 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7881 -0.3696 2.4658 6 7 2.4337 -1.2701 3.3204 7 6 2.4101 -1.2276 4.7846 8 6 3.0786 -2.1794 2.5723 9 6 2.8484 -1.8636 1.2483 10 6 3.3623 -2.5904 0.0731 11 8 3.0856 -2.2074 -1.0474 12 7 4.1387 -3.6792 0.2406 13 6 4.8085 -4.6228 -0.6755 14 6 5.7877 -4.8887 0.4823 15 8 6.9341 -4.0357 0.4737 16 6 6.1392 -6.3436 0.6575 17 1 5.7358 -7.0820 -0.0195 18 6 6.9759 -6.7321 1.6824 19 7 7.4675 -5.8329 2.5066 20 14 7.4110 -8.5356 1.9000 21 1 8.3195 -8.6885 3.0647 22 1 6.1714 -9.3194 2.1323 23 1 8.0887 -9.0325 0.6756 24 6 4.6633 -4.4057 1.4161 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.2409 -0.6203 5.1439 33 1 1.4693 -0.7912 5.1203 34 1 2.5023 -2.2395 5.1790 35 1 3.6697 -3.0057 2.9389 36 1 5.2694 -4.1440 -1.5394 37 1 4.1990 -5.4860 -0.9425 38 1 7.5371 -4.1797 1.2159 39 1 8.0558 -6.1062 3.2278 40 1 4.0097 -5.2045 1.7665 41 1 5.0085 -3.7540 2.2188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408316481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:04 Heat of formation + Delta-G solvation = 21.336953 kcal Electronic energy + Delta-G solvation = -24094.563679 eV Core-core repulsion = 20591.481136 eV Total energy + Delta-G solvation = -3503.082543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25345 -39.17817 -37.14136 -35.56796 -33.91538 -32.37301 -32.24638 -30.45948 -28.30005 -26.98634 -26.83370 -25.37989 -25.28414 -22.46424 -21.95154 -19.93506 -19.07525 -18.43373 -17.47571 -16.53026 -15.93166 -15.56748 -15.26089 -14.85850 -14.65434 -14.38118 -14.34912 -14.08380 -13.39993 -13.16096 -13.06285 -12.82627 -12.51851 -12.34939 -12.26547 -12.02170 -11.89435 -11.58704 -11.26288 -11.09196 -11.04251 -11.02791 -10.80555 -10.55758 -10.50325 -10.31120 -9.56588 -9.19133 -9.08848 -8.78324 -8.48063 -8.38143 -7.76420 -6.42419 -4.52509 1.76977 2.43418 2.47324 3.13865 3.19808 3.22629 3.65494 4.00220 4.16695 4.42873 4.78222 4.81976 4.92405 5.04289 5.16430 5.25824 5.28416 5.36374 5.52098 5.63670 5.72388 5.76921 5.81503 5.92480 5.96652 6.06577 6.14986 6.22711 6.37383 6.39540 6.45746 6.50743 6.60784 6.68355 6.81488 6.98526 7.08750 7.59949 7.78217 7.80166 8.50818 8.55212 8.91769 9.18928 9.40807 10.64100 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.004328 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.414149 B = 6468.312307 C = 7225.595451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.137 4.137 4 C 0.137 3.863 5 N -0.305 5.305 6 N -0.369 5.369 7 C 0.100 3.900 8 C 0.096 3.904 9 C -0.274 4.274 10 C 0.607 3.393 11 O -0.565 6.565 12 N -0.631 5.631 13 C 0.115 3.885 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.537 4.537 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.900 5.900 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.073 3.927 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.189 0.811 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.391 0.609 39 H 0.273 0.727 40 H 0.082 0.918 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 6.991 4.589 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C -0.195 4.195 4 C -0.030 4.030 5 N -0.125 5.125 6 N -0.147 5.147 7 C -0.041 4.041 8 C -0.054 4.054 9 C -0.289 4.289 10 C 0.398 3.602 11 O -0.446 6.446 12 N -0.363 5.363 13 C -0.007 4.007 14 C 0.198 3.802 15 O -0.383 6.383 16 C -0.575 4.575 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.540 5.540 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.049 4.049 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.877 8.436 4.575 13.771 hybrid contribution 1.003 -1.851 0.652 2.204 sum -8.874 6.585 5.228 12.225 Atomic orbital electron populations 1.21761 0.94223 1.01820 1.01672 1.19958 0.95668 0.95580 0.93885 1.21764 1.01257 0.94870 1.01654 1.22327 0.94405 0.93073 0.93238 1.77028 1.20613 1.14751 1.00144 1.48273 1.38159 1.21429 1.06855 1.21924 1.04264 1.04079 0.73879 1.23657 0.95587 0.94902 0.91264 1.20301 1.12530 1.03302 0.92767 1.16860 0.76646 0.79414 0.87247 1.90618 1.60396 1.68294 1.25320 1.49998 1.48480 1.25626 1.12236 1.23405 0.91655 0.89870 0.95751 1.19830 0.82850 0.88829 0.88684 1.86083 1.36136 1.62101 1.53943 1.21493 1.29988 0.91905 1.14114 0.91065 1.25055 0.94526 0.98723 0.94638 1.69394 1.33011 1.34021 1.17547 0.86407 0.78546 0.83778 0.77908 1.21047 1.19916 1.19824 1.24414 0.96583 0.93110 0.90839 0.92610 0.92179 0.92792 0.86376 0.92609 0.92680 0.92171 0.90459 0.89209 0.89145 0.79439 0.91057 0.89671 0.75475 0.91683 0.89988 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.18 37.16 0.34 -1.44 16 2 C -0.03 -0.48 3.26 -91.77 -0.30 -0.78 16 3 C -0.14 -1.84 9.18 37.16 0.34 -1.50 16 4 C 0.14 2.39 5.77 -82.02 -0.47 1.91 16 5 N -0.30 -4.97 12.50 33.89 0.42 -4.54 16 6 N -0.37 -5.30 3.98 -67.60 -0.27 -5.57 16 7 C 0.10 0.90 11.44 59.85 0.68 1.58 16 8 C 0.10 1.54 10.58 -16.56 -0.18 1.37 16 9 C -0.27 -5.16 6.13 -105.07 -0.64 -5.80 16 10 C 0.61 13.04 8.05 -12.52 -0.10 12.94 16 11 O -0.56 -13.16 15.29 5.27 0.08 -13.08 16 12 N -0.63 -13.42 3.61 -179.38 -0.65 -14.07 16 13 C 0.12 2.49 8.23 -2.96 -0.02 2.47 16 14 C 0.24 5.59 1.40 -90.85 -0.13 5.46 16 15 O -0.57 -14.39 13.48 -35.23 -0.48 -14.87 16 16 C -0.54 -13.05 8.61 -34.44 -0.30 -13.35 16 17 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 19 N -0.90 -21.88 11.20 55.43 0.62 -21.25 16 20 Si 0.91 18.89 29.54 -169.99 -5.02 13.87 16 21 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.07 1.51 6.56 -2.85 -0.02 1.49 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.12 2.09 5.60 -51.93 -0.29 1.80 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.19 2.75 5.10 -52.48 -0.27 2.49 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 38 H 0.39 9.86 6.60 45.56 0.30 10.16 16 39 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 40 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.07 1.34 6.26 -51.93 -0.32 1.01 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -29.49 341.98 -6.22 -35.71 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.20 Total: 12.63 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.89 Total: 6.02 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.13 Total: -45.43 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.39 Total: -27.95 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.49 -6.22 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408316481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds