Wall clock time and date at job start Tue Mar 31 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.50694 * 109.47223 * 119.99619 * 2 1 3 5 5 N 1.30451 * 125.99305 * 300.15282 * 4 2 1 6 6 N 1.39935 * 108.89875 * 180.26345 * 5 4 2 7 7 C 1.46500 * 125.75459 * 179.73024 * 6 5 4 8 8 C 1.34257 * 108.48953 * 359.74273 * 6 5 4 9 9 C 1.38044 * 107.42093 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41402 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99521 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00050 * 0.02562 * 10 9 8 13 13 C 1.47586 * 134.48934 * 180.02562 * 12 10 9 14 14 C 1.53949 * 86.11504 * 155.36070 * 13 12 10 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45633 * 359.87277 * 12 10 9 25 25 H 1.08999 * 109.47264 * 299.99915 * 1 2 3 26 26 H 1.09001 * 109.47314 * 60.00511 * 1 2 3 27 27 H 1.09006 * 109.46563 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47264 * 240.00085 * 2 1 3 29 29 H 1.08999 * 109.47094 * 59.99981 * 3 2 1 30 30 H 1.08997 * 109.47393 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47199 * 300.00057 * 3 2 1 32 32 H 1.09002 * 109.47062 * 270.02163 * 7 6 5 33 33 H 1.09006 * 109.46740 * 30.01859 * 7 6 5 34 34 H 1.08996 * 109.47267 * 150.01355 * 7 6 5 35 35 H 1.08005 * 126.29136 * 179.97438 * 8 6 5 36 36 H 1.08993 * 113.76952 * 41.05857 * 13 12 10 37 37 H 1.08995 * 113.86700 * 269.67206 * 13 12 10 38 38 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08995 * 113.77163 * 90.38050 * 24 12 10 41 41 H 1.09005 * 113.83876 * 318.91036 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7881 -0.3696 2.4658 6 7 2.4337 -1.2701 3.3204 7 6 2.4101 -1.2276 4.7846 8 6 3.0786 -2.1794 2.5723 9 6 2.8484 -1.8636 1.2483 10 6 3.3623 -2.5904 0.0731 11 8 3.0856 -2.2074 -1.0474 12 7 4.1387 -3.6792 0.2406 13 6 4.8085 -4.6228 -0.6755 14 6 5.7877 -4.8887 0.4823 15 8 6.9341 -4.0357 0.4737 16 6 6.1392 -6.3436 0.6575 17 1 5.7358 -7.0820 -0.0195 18 6 6.9759 -6.7321 1.6824 19 7 7.4675 -5.8329 2.5066 20 14 7.4110 -8.5356 1.9000 21 1 8.3195 -8.6885 3.0647 22 1 6.1714 -9.3194 2.1323 23 1 8.0887 -9.0325 0.6756 24 6 4.6633 -4.4057 1.4161 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.2409 -0.6203 5.1439 33 1 1.4693 -0.7912 5.1203 34 1 2.5023 -2.2395 5.1790 35 1 3.6697 -3.0057 2.9389 36 1 5.2694 -4.1440 -1.5394 37 1 4.1990 -5.4860 -0.9425 38 1 7.5371 -4.1797 1.2159 39 1 8.0558 -6.1062 3.2278 40 1 4.0097 -5.2045 1.7665 41 1 5.0085 -3.7540 2.2188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408316481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:04 Heat of formation + Delta-G solvation = 1.100080 kcal Electronic energy + Delta-G solvation = -24095.441216 eV Core-core repulsion = 20591.481136 eV Total energy + Delta-G solvation = -3503.960080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.52761 -40.85291 -38.82908 -36.74796 -35.74088 -34.12433 -33.44628 -31.85573 -29.93026 -28.03336 -27.94270 -27.07066 -26.96612 -23.78637 -23.17278 -21.56613 -20.51331 -19.84375 -19.27042 -17.98412 -17.46487 -17.02204 -16.77022 -16.35579 -16.09009 -15.91179 -15.65191 -15.43483 -14.85308 -14.53983 -14.36234 -14.14406 -13.90799 -13.72733 -13.51259 -13.38593 -13.31444 -12.96475 -12.78456 -12.74088 -12.40903 -12.22846 -12.17360 -12.12641 -12.00815 -11.79409 -11.29736 -10.78431 -10.57966 -10.38371 -10.20552 -9.82499 -9.40823 -8.24021 -6.40444 0.46963 1.07752 1.40984 1.49894 1.53061 1.59212 2.03214 2.41162 2.46433 2.98979 3.28236 3.58556 3.66042 3.91362 3.96237 4.12215 4.18945 4.25212 4.37396 4.40916 4.52474 4.56309 4.61871 4.65332 4.66304 4.78768 4.81170 4.88747 4.93136 4.94349 5.05956 5.09983 5.27312 5.31095 5.33147 5.55461 5.75192 5.86000 5.96315 6.51994 6.64682 6.89790 7.25845 7.33719 7.47687 8.81716 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.004328 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.414149 B = 6468.312307 C = 7225.595451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.036 4.036 3 C -0.130 4.130 4 C 0.128 3.872 5 N -0.310 5.310 6 N -0.358 5.358 7 C 0.086 3.914 8 C 0.109 3.891 9 C -0.313 4.313 10 C 0.601 3.399 11 O -0.594 6.594 12 N -0.634 5.634 13 C 0.113 3.887 14 C 0.222 3.778 15 O -0.586 6.586 16 C -0.557 4.557 17 H 0.071 0.929 18 C 0.038 3.962 19 N -0.914 5.914 20 Si 0.965 3.035 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.278 1.278 24 C 0.090 3.910 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.387 0.613 39 H 0.276 0.724 40 H 0.095 0.905 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 6.894 6.384 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.039 4.039 5 N -0.131 5.131 6 N -0.135 5.135 7 C -0.053 4.053 8 C -0.044 4.044 9 C -0.328 4.328 10 C 0.394 3.606 11 O -0.477 6.477 12 N -0.366 5.366 13 C -0.009 4.009 14 C 0.180 3.820 15 O -0.398 6.398 16 C -0.595 4.595 17 H 0.089 0.911 18 C -0.163 4.163 19 N -0.554 5.554 20 Si 0.790 3.210 21 H -0.208 1.208 22 H -0.192 1.192 23 H -0.203 1.203 24 C -0.032 4.032 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.219 0.781 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.742 8.355 6.403 15.040 hybrid contribution 1.290 -1.794 0.149 2.215 sum -9.452 6.561 6.552 13.241 Atomic orbital electron populations 1.21701 0.92333 1.01535 1.03040 1.19989 0.97250 0.96197 0.92201 1.21712 1.00171 0.93824 1.03079 1.22581 0.94280 0.92877 0.94170 1.76987 1.20983 1.15265 0.99862 1.48728 1.36310 1.19957 1.08539 1.22431 1.05840 1.06380 0.70619 1.23731 0.94991 0.95097 0.90571 1.20258 1.14847 1.04702 0.92951 1.17309 0.76259 0.79209 0.87869 1.90592 1.61513 1.68960 1.26672 1.50022 1.48606 1.25751 1.12248 1.23437 0.91782 0.90574 0.95099 1.20081 0.82925 0.88553 0.90394 1.86073 1.36976 1.62741 1.54012 1.21689 1.30847 0.92363 1.14587 0.91094 1.25665 0.94281 1.02027 0.94309 1.69449 1.33027 1.35270 1.17670 0.85502 0.78315 0.79727 0.77437 1.20790 1.19242 1.20341 1.24251 0.95416 0.93225 0.90346 0.91931 0.90042 0.93884 0.89131 0.91892 0.94286 0.89969 0.88852 0.87656 0.86537 0.78127 0.92385 0.87987 0.75868 0.91450 0.88672 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.18 71.98 0.66 -2.55 16 2 C -0.04 -1.11 3.26 -11.54 -0.04 -1.15 16 3 C -0.13 -3.39 9.18 71.98 0.66 -2.72 16 4 C 0.13 4.42 5.77 43.51 0.25 4.67 16 5 N -0.31 -9.64 12.50 -46.68 -0.58 -10.22 16 6 N -0.36 -9.49 3.98 -367.77 -1.46 -10.96 16 7 C 0.09 1.26 11.44 127.77 1.46 2.73 16 8 C 0.11 3.34 10.58 84.28 0.89 4.23 16 9 C -0.31 -11.74 6.13 -20.15 -0.12 -11.86 16 10 C 0.60 26.28 8.05 86.66 0.70 26.98 16 11 O -0.59 -28.63 15.29 -4.06 -0.06 -28.70 16 12 N -0.63 -27.14 3.61 -843.52 -3.05 -30.19 16 13 C 0.11 4.97 8.23 86.49 0.71 5.68 16 14 C 0.22 10.34 1.40 -10.88 -0.02 10.32 16 15 O -0.59 -29.95 13.48 -148.98 -2.01 -31.96 16 16 C -0.56 -26.83 8.61 25.60 0.22 -26.61 16 17 H 0.07 3.34 7.81 -2.91 -0.02 3.31 16 18 C 0.04 1.80 5.40 84.66 0.46 2.25 16 19 N -0.91 -43.72 11.20 21.45 0.24 -43.48 16 20 Si 0.96 37.87 29.54 68.60 2.03 39.90 16 21 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 C 0.09 3.63 6.56 86.44 0.57 4.20 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 3.32 5.60 -2.39 -0.01 3.31 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.20 5.50 5.10 -2.91 -0.01 5.49 16 36 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16 38 H 0.39 19.77 6.60 -74.06 -0.49 19.28 16 39 H 0.28 12.54 8.31 -92.71 -0.77 11.77 16 40 H 0.10 3.58 8.09 -2.39 -0.02 3.56 16 41 H 0.07 2.86 6.26 -2.38 -0.01 2.84 16 Total: -1.00 -63.27 341.98 2.07 -61.20 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: 0.56 Total: 38.24 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.40 Total: 16.16 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -4.85 Total: -94.84 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.07 Total: -60.66 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -63.27 2.07 -61.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408316481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.305 kcal (2) G-P(sol) polarization free energy of solvation -63.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds