Wall clock time and date at job start Tue Mar 31 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47041 * 80.21297 * 3 2 1 5 5 C 1.34777 * 119.99786 * 269.99632 * 4 3 2 6 6 O 1.21589 * 119.99334 * 185.16360 * 5 4 3 7 7 N 1.34768 * 120.00153 * 5.16958 * 5 4 3 8 8 C 1.46502 * 120.00203 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47475 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99841 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99812 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99991 * 359.97438 * 12 11 9 14 14 C 1.38944 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00232 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47005 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47164 * 119.99868 * 16 14 12 19 19 H 1.48496 * 109.47206 * 239.99872 * 16 14 12 20 20 C 1.46496 * 119.99849 * 90.00220 * 4 3 2 21 21 C 1.54272 * 110.03413 * 297.84341 * 20 4 3 22 22 C 1.54959 * 104.16119 * 95.75350 * 21 20 4 23 23 C 1.54890 * 102.77561 * 37.88968 * 22 21 20 24 24 C 1.53878 * 110.03440 * 55.06085 * 20 4 3 25 25 H 4.40642 * 5.51409 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46707 * 320.21019 * 3 2 1 27 27 H 1.09000 * 109.46433 * 200.21534 * 3 2 1 28 28 H 0.97006 * 120.00047 * 359.97438 * 7 5 4 29 29 H 1.09005 * 109.46922 * 300.00173 * 8 7 5 30 30 H 1.09006 * 109.46785 * 59.99576 * 8 7 5 31 31 H 0.97001 * 119.99997 * 359.97438 * 11 9 8 32 32 H 0.96999 * 120.00288 * 179.97438 * 15 14 12 33 33 H 1.09001 * 110.01654 * 176.45020 * 20 4 3 34 34 H 1.09001 * 110.48760 * 214.40393 * 21 20 4 35 35 H 1.09001 * 110.48168 * 337.04542 * 21 20 4 36 36 H 1.08995 * 110.72327 * 279.58010 * 22 21 20 37 37 H 1.08995 * 110.92249 * 156.29307 * 22 21 20 38 38 H 1.09004 * 110.48876 * 203.39952 * 23 22 21 39 39 H 1.09002 * 110.59877 * 80.81951 * 23 22 21 40 40 H 1.09001 * 110.03401 * 359.94873 * 24 20 4 41 41 H 1.09001 * 110.02934 * 121.38419 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.2339 -1.3611 5 6 3.3597 -1.4920 -1.7887 6 8 3.8532 -1.6827 -2.8835 7 7 3.0379 -2.5386 -1.0030 8 6 3.2822 -3.9062 -1.4680 9 6 2.8380 -4.8834 -0.4104 10 8 2.3643 -4.4774 0.6299 11 7 2.9679 -6.2085 -0.6199 12 6 2.5633 -7.0975 0.3422 13 1 2.1408 -6.7360 1.2680 14 6 2.6967 -8.4635 0.1260 15 7 3.2104 -8.9034 -1.0008 16 14 2.1461 -9.6748 1.4371 17 1 1.6072 -8.9306 2.6036 18 1 1.0896 -10.5586 0.8821 19 1 3.3043 -10.4983 1.8680 20 6 3.3782 0.8991 -2.2573 21 6 2.0623 1.6621 -2.5144 22 6 2.0887 2.8208 -1.4859 23 6 3.5818 3.2327 -1.4723 24 6 4.3440 1.8971 -1.5946 25 1 -1.0499 0.0002 -0.0001 26 1 3.0097 -0.7889 0.6577 27 1 3.0089 0.9652 0.3551 28 1 2.6445 -2.3864 -0.1295 29 1 2.7213 -4.0835 -2.3857 30 1 4.3467 -4.0395 -1.6614 31 1 3.3471 -6.5331 -1.4516 32 1 3.3039 -9.8570 -1.1516 33 1 3.7954 0.5458 -3.2003 34 1 2.0414 2.0549 -3.5309 35 1 1.2044 1.0134 -2.3374 36 1 1.7758 2.4707 -0.5023 37 1 1.4625 3.6493 -1.8167 38 1 3.8319 3.7303 -0.5352 39 1 3.8086 3.8804 -2.3192 40 1 4.6307 1.5389 -0.6059 41 1 5.2297 2.0282 -2.2162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491777306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:05 Heat of formation + Delta-G solvation = -11.338588 kcal Electronic energy + Delta-G solvation = -23422.686798 eV Core-core repulsion = 19918.187337 eV Total energy + Delta-G solvation = -3504.499461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52151 -38.58693 -37.75797 -35.16574 -34.35548 -33.54517 -32.62774 -31.35724 -28.92828 -28.72338 -27.63171 -26.21735 -24.37397 -21.19008 -20.75420 -19.72799 -19.57853 -18.64618 -18.06920 -17.76345 -16.63459 -15.75572 -15.61930 -15.43134 -15.00783 -14.62371 -14.55824 -14.18479 -13.72457 -13.63899 -13.55011 -13.42453 -13.20037 -12.14434 -12.13347 -11.86333 -11.64217 -11.61803 -11.35098 -11.30116 -11.13535 -11.12258 -10.76421 -10.40618 -10.39849 -10.31748 -10.25340 -9.87972 -9.63490 -8.99056 -8.60853 -8.55217 -8.08565 -6.50236 -3.92136 2.33214 2.79106 3.10761 3.10912 3.23162 3.30028 3.32825 3.76466 4.02823 4.16865 4.29284 4.42604 4.50654 4.70638 4.89971 5.01182 5.18554 5.21323 5.28431 5.29877 5.34980 5.40685 5.46468 5.64539 5.69095 5.82472 5.86745 5.90011 6.01362 6.02778 6.09694 6.10707 6.12065 6.51986 6.76299 7.03625 7.47410 7.56050 7.94021 8.13970 8.46706 8.76261 9.06095 9.41059 9.89005 10.66804 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032341 B = 0.003097 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.577744 B = 9039.182482 C = 9537.102027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.207 4.207 3 C 0.216 3.784 4 N -0.619 5.619 5 C 0.709 3.291 6 O -0.593 6.593 7 N -0.722 5.722 8 C 0.126 3.874 9 C 0.429 3.571 10 O -0.597 6.597 11 N -0.550 5.550 12 C -0.304 4.304 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.153 3.847 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.137 4.137 25 H 0.216 0.784 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.407 0.593 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.396 0.604 32 H 0.273 0.727 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 21.295 -1.103 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.208 4.208 3 C 0.093 3.907 4 N -0.355 5.355 5 C 0.410 3.590 6 O -0.471 6.471 7 N -0.381 5.381 8 C -0.002 4.002 9 C 0.215 3.785 10 O -0.484 6.484 11 N -0.184 5.184 12 C -0.433 4.433 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.049 3.951 21 C -0.176 4.176 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.175 4.175 25 H 0.233 0.767 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.246 0.754 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.508 21.153 -1.286 21.198 hybrid contribution -0.498 -0.894 0.522 1.149 sum -1.006 20.259 -0.763 20.298 Atomic orbital electron populations 1.24916 0.95901 1.00439 0.98678 1.23503 0.94894 1.00913 1.01512 1.18357 0.83957 1.03852 0.84572 1.47157 1.69878 1.04815 1.13671 1.15808 0.78955 0.80274 0.83950 1.90889 1.50779 1.84214 1.21259 1.44950 1.66997 1.04415 1.21706 1.20810 1.01842 0.80462 0.97083 1.19759 0.86104 0.83704 0.88937 1.90492 1.51095 1.78097 1.28681 1.41791 1.53993 1.03833 1.18832 1.19771 1.38431 0.86216 0.98880 0.87654 1.25322 0.96943 0.97899 0.97600 1.69625 1.44018 1.15752 1.24112 0.85763 0.78276 0.79768 0.80311 1.19147 1.20629 1.20624 1.21605 0.94827 0.84809 0.93841 1.22805 0.98073 0.97312 0.99377 1.22576 0.96266 0.97850 0.99708 1.22372 0.95179 0.96859 1.01763 1.22590 0.98497 0.94753 1.01694 0.76746 0.88222 0.87747 0.75393 0.90028 0.89934 0.77022 0.91660 0.87620 0.90837 0.90734 0.91280 0.91704 0.91648 0.91481 0.90874 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 19.17 29.55 0.57 -1.48 16 2 C -0.21 -2.50 10.72 -37.12 -0.40 -2.89 16 3 C 0.22 2.41 4.51 -6.83 -0.03 2.38 16 4 N -0.62 -8.13 2.32 -173.85 -0.40 -8.54 16 5 C 0.71 12.10 8.26 -86.92 -0.72 11.38 16 6 O -0.59 -11.82 15.70 5.29 0.08 -11.73 16 7 N -0.72 -12.84 5.37 -66.41 -0.36 -13.20 16 8 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 9 C 0.43 10.01 7.85 -10.99 -0.09 9.93 16 10 O -0.60 -15.46 15.24 5.55 0.08 -15.38 16 11 N -0.55 -13.76 5.29 -10.97 -0.06 -13.82 16 12 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 13 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.89 -24.03 13.05 55.50 0.72 -23.31 16 16 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.15 1.72 3.35 -66.81 -0.22 1.50 16 21 C -0.14 -1.35 5.88 -25.03 -0.15 -1.49 16 22 C -0.13 -1.00 6.36 -24.70 -0.16 -1.16 16 23 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 24 C -0.14 -1.19 5.97 -25.61 -0.15 -1.34 16 25 H 0.22 1.77 7.80 -54.09 -0.42 1.35 16 26 H 0.10 1.15 6.59 -51.93 -0.34 0.80 16 27 H 0.10 0.90 5.63 -51.93 -0.29 0.61 16 28 H 0.41 7.20 5.23 -40.82 -0.21 6.99 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 33 H 0.11 1.39 6.95 -51.93 -0.36 1.03 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.86 6.73 -51.93 -0.35 0.52 16 36 H 0.07 0.58 5.90 -51.93 -0.31 0.27 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.63 6.66 -51.93 -0.35 0.29 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -31.91 339.93 -7.04 -38.96 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -5.42 Total: 16.02 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.79 Total: 10.28 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.09 Total: -58.86 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.17 Total: -27.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.91 -7.04 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491777306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.617 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds