Wall clock time and date at job start Tue Mar 31 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47041 * 80.21297 * 3 2 1 5 5 C 1.34777 * 119.99786 * 269.99632 * 4 3 2 6 6 O 1.21589 * 119.99334 * 185.16360 * 5 4 3 7 7 N 1.34768 * 120.00153 * 5.16958 * 5 4 3 8 8 C 1.46502 * 120.00203 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47475 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99841 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99812 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99991 * 359.97438 * 12 11 9 14 14 C 1.38944 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00232 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47005 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47164 * 119.99868 * 16 14 12 19 19 H 1.48496 * 109.47206 * 239.99872 * 16 14 12 20 20 C 1.46496 * 119.99849 * 90.00220 * 4 3 2 21 21 C 1.54272 * 110.03413 * 297.84341 * 20 4 3 22 22 C 1.54959 * 104.16119 * 95.75350 * 21 20 4 23 23 C 1.54890 * 102.77561 * 37.88968 * 22 21 20 24 24 C 1.53878 * 110.03440 * 55.06085 * 20 4 3 25 25 H 4.40642 * 5.51409 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46707 * 320.21019 * 3 2 1 27 27 H 1.09000 * 109.46433 * 200.21534 * 3 2 1 28 28 H 0.97006 * 120.00047 * 359.97438 * 7 5 4 29 29 H 1.09005 * 109.46922 * 300.00173 * 8 7 5 30 30 H 1.09006 * 109.46785 * 59.99576 * 8 7 5 31 31 H 0.97001 * 119.99997 * 359.97438 * 11 9 8 32 32 H 0.96999 * 120.00288 * 179.97438 * 15 14 12 33 33 H 1.09001 * 110.01654 * 176.45020 * 20 4 3 34 34 H 1.09001 * 110.48760 * 214.40393 * 21 20 4 35 35 H 1.09001 * 110.48168 * 337.04542 * 21 20 4 36 36 H 1.08995 * 110.72327 * 279.58010 * 22 21 20 37 37 H 1.08995 * 110.92249 * 156.29307 * 22 21 20 38 38 H 1.09004 * 110.48876 * 203.39952 * 23 22 21 39 39 H 1.09002 * 110.59877 * 80.81951 * 23 22 21 40 40 H 1.09001 * 110.03401 * 359.94873 * 24 20 4 41 41 H 1.09001 * 110.02934 * 121.38419 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.2339 -1.3611 5 6 3.3597 -1.4920 -1.7887 6 8 3.8532 -1.6827 -2.8835 7 7 3.0379 -2.5386 -1.0030 8 6 3.2822 -3.9062 -1.4680 9 6 2.8380 -4.8834 -0.4104 10 8 2.3643 -4.4774 0.6299 11 7 2.9679 -6.2085 -0.6199 12 6 2.5633 -7.0975 0.3422 13 1 2.1408 -6.7360 1.2680 14 6 2.6967 -8.4635 0.1260 15 7 3.2104 -8.9034 -1.0008 16 14 2.1461 -9.6748 1.4371 17 1 1.6072 -8.9306 2.6036 18 1 1.0896 -10.5586 0.8821 19 1 3.3043 -10.4983 1.8680 20 6 3.3782 0.8991 -2.2573 21 6 2.0623 1.6621 -2.5144 22 6 2.0887 2.8208 -1.4859 23 6 3.5818 3.2327 -1.4723 24 6 4.3440 1.8971 -1.5946 25 1 -1.0499 0.0002 -0.0001 26 1 3.0097 -0.7889 0.6577 27 1 3.0089 0.9652 0.3551 28 1 2.6445 -2.3864 -0.1295 29 1 2.7213 -4.0835 -2.3857 30 1 4.3467 -4.0395 -1.6614 31 1 3.3471 -6.5331 -1.4516 32 1 3.3039 -9.8570 -1.1516 33 1 3.7954 0.5458 -3.2003 34 1 2.0414 2.0549 -3.5309 35 1 1.2044 1.0134 -2.3374 36 1 1.7758 2.4707 -0.5023 37 1 1.4625 3.6493 -1.8167 38 1 3.8319 3.7303 -0.5352 39 1 3.8086 3.8804 -2.3192 40 1 4.6307 1.5389 -0.6059 41 1 5.2297 2.0282 -2.2162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491777306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:04 Heat of formation + Delta-G solvation = -32.190155 kcal Electronic energy + Delta-G solvation = -23423.590990 eV Core-core repulsion = 19918.187337 eV Total energy + Delta-G solvation = -3505.403652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72516 -40.25494 -39.00071 -36.36591 -36.06993 -35.10238 -33.59238 -33.36605 -29.84420 -29.60473 -28.93657 -27.41322 -26.17220 -22.29864 -21.48309 -21.39240 -20.67893 -20.20017 -19.71887 -18.81593 -17.79202 -17.33999 -16.95950 -16.73661 -16.28833 -16.05969 -15.96645 -15.70217 -15.12510 -14.97219 -14.72784 -14.33876 -14.11071 -13.85246 -13.66103 -13.55590 -12.93091 -12.81671 -12.48880 -12.45035 -12.11582 -12.03360 -11.97172 -11.93881 -11.58563 -11.41819 -11.36059 -11.26743 -11.01814 -10.56912 -10.36415 -10.10326 -9.72918 -8.51464 -6.01712 1.25293 1.34719 1.42936 1.57089 1.87666 1.88926 1.98898 2.01940 2.29105 2.88022 3.13877 3.15656 3.46231 3.66043 3.76245 4.01802 4.13412 4.18960 4.38796 4.40689 4.42916 4.47996 4.55206 4.60028 4.65512 4.82556 4.93056 5.05393 5.10069 5.13005 5.25443 5.28650 5.36283 5.38421 5.49271 5.51303 5.87301 5.91652 6.47215 6.66815 6.81333 7.02942 7.38120 7.45831 7.93416 8.65762 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032341 B = 0.003097 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.577744 B = 9039.182482 C = 9537.102027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.233 4.233 3 C 0.214 3.786 4 N -0.609 5.609 5 C 0.706 3.294 6 O -0.625 6.625 7 N -0.724 5.724 8 C 0.139 3.861 9 C 0.434 3.566 10 O -0.623 6.623 11 N -0.558 5.558 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.011 4.011 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.145 3.855 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.132 4.132 25 H 0.240 0.760 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.408 0.592 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.399 0.601 32 H 0.280 0.720 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 22.528 -0.528 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.235 4.235 3 C 0.092 3.908 4 N -0.344 5.344 5 C 0.407 3.593 6 O -0.507 6.507 7 N -0.383 5.383 8 C 0.011 3.989 9 C 0.221 3.779 10 O -0.511 6.511 11 N -0.194 5.194 12 C -0.465 4.465 13 H 0.104 0.896 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.042 3.958 21 C -0.172 4.172 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.171 4.171 25 H 0.256 0.744 26 H 0.113 0.887 27 H 0.151 0.849 28 H 0.247 0.753 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.744 22.429 -0.713 22.453 hybrid contribution -0.450 -1.212 0.311 1.330 sum -1.194 21.217 -0.402 21.255 Atomic orbital electron populations 1.25647 0.96810 0.99637 0.97604 1.23767 0.95465 1.01749 1.02476 1.18532 0.83883 1.05172 0.83204 1.47213 1.68765 1.03783 1.14666 1.15946 0.78752 0.81173 0.83380 1.90861 1.52308 1.84931 1.22566 1.44892 1.67413 1.04064 1.21881 1.20619 1.02413 0.80275 0.95613 1.20363 0.84648 0.83710 0.89187 1.90468 1.51952 1.78574 1.30122 1.41829 1.54514 1.04312 1.18707 1.19769 1.40242 0.87374 0.99107 0.89581 1.26137 0.96420 0.98959 0.99627 1.69689 1.44116 1.16522 1.25309 0.84806 0.78198 0.77370 0.77570 1.19401 1.19645 1.19585 1.21817 0.96374 0.84686 0.92909 1.22758 0.96281 0.97571 1.00602 1.22542 0.97208 0.97266 0.98781 1.22349 0.93988 0.95938 1.03060 1.22564 0.98145 0.94845 1.01527 0.74397 0.88735 0.84887 0.75296 0.89285 0.88793 0.76701 0.91057 0.89987 0.90064 0.92656 0.91579 0.90443 0.90100 0.90487 0.90609 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 19.17 74.32 1.42 -2.40 16 2 C -0.23 -5.42 10.72 31.12 0.33 -5.09 16 3 C 0.21 4.59 4.51 84.57 0.38 4.97 16 4 N -0.61 -15.79 2.32 -822.19 -1.91 -17.70 16 5 C 0.71 24.22 8.26 179.06 1.48 25.70 16 6 O -0.63 -25.24 15.70 -4.00 -0.06 -25.31 16 7 N -0.72 -25.86 5.37 -482.29 -2.59 -28.45 16 8 C 0.14 5.38 6.15 85.63 0.53 5.90 16 9 C 0.43 20.51 7.85 87.66 0.69 21.20 16 10 O -0.62 -32.77 15.24 -3.07 -0.05 -32.82 16 11 N -0.56 -28.42 5.29 -306.99 -1.62 -30.05 16 12 C -0.34 -18.63 9.68 84.04 0.81 -17.81 16 13 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 14 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 15 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 16 Si 1.00 41.92 29.55 68.60 2.03 43.94 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 20 C 0.15 3.18 3.35 45.72 0.15 3.33 16 21 C -0.13 -2.48 5.88 31.70 0.19 -2.29 16 22 C -0.12 -1.63 6.36 31.91 0.20 -1.42 16 23 C -0.12 -1.31 6.83 31.67 0.22 -1.10 16 24 C -0.13 -2.06 5.97 31.32 0.19 -1.87 16 25 H 0.24 3.50 7.80 -4.42 -0.03 3.47 16 26 H 0.09 2.14 6.59 -2.39 -0.02 2.12 16 27 H 0.13 2.04 5.63 -2.39 -0.01 2.02 16 28 H 0.41 14.53 5.23 -92.70 -0.49 14.04 16 29 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 30 H 0.09 3.43 8.14 -2.38 -0.02 3.42 16 31 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 32 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 33 H 0.08 2.19 6.95 -2.39 -0.02 2.17 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.25 6.73 -2.39 -0.02 1.23 16 36 H 0.07 0.95 5.90 -2.39 -0.01 0.94 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 1.15 6.66 -2.39 -0.02 1.13 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.46 339.93 2.99 -65.47 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.15 Total: 44.56 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 7.06 Total: 29.03 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.84 Total: -124.88 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.11 Total: -58.12 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -68.46 2.99 -65.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491777306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.282 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds