Wall clock time and date at job start Tue Mar 31 2020 04:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41953 * 2 1 4 4 O 1.44427 * 110.37419 * 122.31386 * 2 1 3 5 5 C 1.44420 * 105.27420 * 159.34537 * 4 2 1 6 6 H 1.08991 * 110.37660 * 78.31543 * 5 4 2 7 7 C 1.53001 * 110.37062 * 200.65441 * 5 4 2 8 8 C 1.54483 * 104.80386 * 319.48128 * 5 4 2 9 9 H 1.08995 * 110.51342 * 265.34058 * 8 5 4 10 10 C 1.52997 * 110.51197 * 142.62556 * 8 5 4 11 11 C 1.54475 * 110.36901 * 237.69400 * 2 1 3 12 12 H 1.09005 * 110.63124 * 335.88782 * 11 2 1 13 13 C 1.50696 * 110.51264 * 98.54343 * 11 2 1 14 14 O 1.21604 * 120.00241 * 28.28421 * 13 11 2 15 15 N 1.32916 * 119.99967 * 208.00477 * 13 11 2 16 16 C 1.33298 * 119.99889 * 180.27507 * 15 13 11 17 17 C 1.41051 * 126.37169 * 0.02609 * 16 15 13 18 18 C 1.35290 * 108.21009 * 179.97438 * 17 16 15 19 19 N 1.36313 * 108.89352 * 0.02562 * 18 17 16 20 20 C 1.36569 * 125.84619 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99971 * 10.48920 * 20 19 18 22 22 C 1.39101 * 120.00185 * 190.49441 * 20 19 18 23 23 N 1.31333 * 119.99718 * 10.19773 * 22 20 19 24 24 Si 1.86799 * 119.99914 * 190.20204 * 22 20 19 25 25 H 1.48496 * 109.47262 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46921 * 119.99739 * 24 22 20 27 27 H 1.48500 * 109.47069 * 239.99370 * 24 22 20 28 28 N 1.37380 * 126.36625 * 179.71798 * 16 15 13 29 29 H 0.97000 * 126.33486 * 0.02562 * 28 16 15 30 30 H 1.09005 * 109.47470 * 182.31275 * 1 2 3 31 31 H 1.09008 * 109.46984 * 302.30689 * 1 2 3 32 32 H 1.08997 * 109.47523 * 62.30686 * 1 2 3 33 33 H 1.09002 * 109.47298 * 175.37733 * 7 5 4 34 34 H 1.08996 * 109.47172 * 295.38172 * 7 5 4 35 35 H 1.09002 * 109.47082 * 55.37690 * 7 5 4 36 36 H 1.09003 * 109.47147 * 307.00916 * 10 8 5 37 37 H 1.08996 * 109.47320 * 67.01020 * 10 8 5 38 38 H 1.08997 * 109.47088 * 187.01340 * 10 8 5 39 39 H 1.08004 * 125.89052 * 359.97438 * 17 16 15 40 40 H 1.08000 * 125.55327 * 179.97438 * 18 17 16 41 41 H 0.96999 * 119.99434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3874 -1.0871 0.7994 6 1 4.0525 -0.2324 0.9220 7 6 3.8602 -2.2594 1.6614 8 6 3.3178 -1.5057 -0.6860 9 1 3.1955 -2.5852 -0.7733 10 6 4.5713 -1.0447 -1.4322 11 6 2.0677 -0.7740 -1.2240 12 1 1.3284 -1.4918 -1.5795 13 6 2.4480 0.1802 -2.3267 14 8 2.8071 1.3101 -2.0561 15 7 2.3964 -0.2150 -3.5947 16 6 2.7381 0.6272 -4.5697 17 6 3.1721 1.9598 -4.4101 18 6 3.4206 2.4733 -5.6368 19 7 3.1615 1.5194 -6.5754 20 6 3.2969 1.6689 -7.9261 21 1 3.7933 2.5408 -8.3259 22 6 2.7955 0.6982 -8.7870 23 7 2.0214 -0.2554 -8.3219 24 14 3.2233 0.7508 -10.6046 25 1 4.1040 1.9160 -10.8723 26 1 3.9278 -0.5002 -10.9837 27 1 1.9776 0.8787 -11.4028 28 7 2.7388 0.3569 -5.9166 29 1 2.4902 -0.4825 -6.3345 30 1 -0.3634 -1.0268 0.0415 31 1 -0.3633 0.5493 0.8686 32 1 -0.3634 0.4776 -0.9099 33 1 4.8511 -2.5745 1.3344 34 1 3.9039 -1.9484 2.7052 35 1 3.1624 -3.0904 1.5589 36 1 4.7188 0.0230 -1.2699 37 1 5.4375 -1.5918 -1.0601 38 1 4.4508 -1.2368 -2.4983 39 1 3.2861 2.4803 -3.4706 40 1 3.7671 3.4760 -5.8394 41 1 1.6720 -0.9325 -8.9223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529522971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:49 Heat of formation + Delta-G solvation = 6.234879 kcal Electronic energy + Delta-G solvation = -24037.179045 eV Core-core repulsion = 20533.441627 eV Total energy + Delta-G solvation = -3503.737418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42131 -39.84344 -37.36467 -34.30212 -33.35362 -32.54164 -32.17261 -30.30505 -29.64298 -29.06334 -26.83439 -25.17295 -23.20033 -21.96487 -20.83607 -20.68319 -19.99013 -19.43242 -17.72437 -16.12658 -15.63575 -15.50508 -15.33577 -15.05096 -14.71625 -14.31624 -14.15877 -13.82086 -13.50080 -13.11176 -12.86368 -12.66110 -12.50088 -12.23289 -12.05753 -11.97618 -11.80597 -11.66020 -11.60579 -11.53516 -11.30260 -11.06968 -10.84828 -10.59059 -10.33417 -10.14080 -9.97285 -9.35661 -9.33024 -8.64556 -8.35491 -7.67156 -7.47458 -6.92784 -4.72919 2.18452 2.61907 2.76194 2.79919 2.88348 3.47020 3.51337 4.13615 4.27292 4.73397 4.88740 4.97037 5.15238 5.30167 5.37994 5.50177 5.60196 5.70546 5.73070 5.75879 5.85198 5.86010 5.93354 6.07300 6.13412 6.24778 6.31994 6.35897 6.42674 6.43412 6.49315 6.53758 6.63868 6.76822 6.81263 7.12767 7.19640 7.30261 7.46782 7.97266 8.28853 8.41456 8.91040 9.08984 9.64295 10.06056 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.003496 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.342020 B = 8006.738768 C = 8134.405777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.086 0.914 4 O -0.376 6.376 5 C 0.075 3.925 6 H 0.068 0.932 7 C -0.143 4.143 8 C -0.098 4.098 9 H 0.080 0.920 10 C -0.148 4.148 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.499 3.501 14 O -0.610 6.610 15 N -0.711 5.711 16 C 0.410 3.590 17 C -0.336 4.336 18 C 0.054 3.946 19 N -0.148 5.148 20 C -0.326 4.326 21 H 0.141 0.859 22 C 0.037 3.963 23 N -0.851 5.851 24 Si 0.961 3.039 25 H -0.258 1.258 26 H -0.269 1.269 27 H -0.270 1.270 28 N -0.435 5.435 29 H 0.453 0.547 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -1.416 4.867 5.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.104 0.896 4 O -0.296 6.296 5 C 0.017 3.983 6 H 0.086 0.914 7 C -0.200 4.200 8 C -0.117 4.117 9 H 0.099 0.901 10 C -0.205 4.205 11 C -0.130 4.130 12 H 0.110 0.890 13 C 0.283 3.717 14 O -0.495 6.495 15 N -0.478 5.478 16 C 0.168 3.832 17 C -0.370 4.370 18 C -0.099 4.099 19 N 0.086 4.914 20 C -0.454 4.454 21 H 0.159 0.841 22 C -0.173 4.173 23 N -0.484 5.484 24 Si 0.783 3.217 25 H -0.182 1.182 26 H -0.194 1.194 27 H -0.195 1.195 28 N -0.165 5.165 29 H 0.309 0.691 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.991 -2.010 4.561 5.367 hybrid contribution 0.170 0.128 -1.115 1.135 sum 2.160 -1.882 3.446 4.481 Atomic orbital electron populations 1.21761 0.93659 1.02274 1.02133 1.22955 0.94647 0.96534 0.83586 0.89601 1.89034 1.26973 1.74920 1.38704 1.23037 0.84904 0.96889 0.93480 0.91438 1.21786 1.01071 0.97512 0.99633 1.22336 0.95225 1.00041 0.94132 0.90136 1.21899 0.95506 1.01808 1.01293 1.22293 0.97997 0.97931 0.94820 0.89030 1.19947 0.78415 0.85921 0.87382 1.90467 1.50135 1.22444 1.86491 1.68593 1.44251 1.35936 0.99043 1.19085 0.90164 0.90747 0.83209 1.22037 1.20027 0.96808 0.98096 1.22399 1.05191 0.93868 0.88423 1.42622 1.43626 1.00799 1.04310 1.20405 1.38682 1.10361 0.75989 0.84129 1.25814 0.93160 0.94729 1.03598 1.69253 1.26377 1.13760 1.39003 0.85297 0.79190 0.79628 0.77552 1.18186 1.19373 1.19460 1.45425 1.60888 1.07666 1.02491 0.69100 0.92189 0.92344 0.91176 0.91404 0.92278 0.91968 0.91678 0.93444 0.91184 0.81056 0.81045 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.52 37.16 0.35 -1.83 16 2 C 0.08 1.44 3.42 -25.96 -0.09 1.35 16 3 H 0.09 1.70 6.88 -51.93 -0.36 1.34 16 4 O -0.38 -6.49 11.04 -35.23 -0.39 -6.88 16 5 C 0.07 1.15 3.48 -25.95 -0.09 1.06 16 6 H 0.07 1.07 7.80 -51.93 -0.41 0.66 16 7 C -0.14 -1.73 9.52 37.16 0.35 -1.37 16 8 C -0.10 -1.64 3.26 -89.05 -0.29 -1.93 16 9 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 10 C -0.15 -2.57 7.99 37.16 0.30 -2.28 16 11 C -0.11 -2.08 3.12 -90.20 -0.28 -2.36 16 12 H 0.09 1.73 7.88 -51.93 -0.41 1.32 16 13 C 0.50 11.38 4.72 -11.81 -0.06 11.32 16 14 O -0.61 -14.92 11.90 5.27 0.06 -14.86 16 15 N -0.71 -17.24 10.09 -11.55 -0.12 -17.36 16 16 C 0.41 10.04 8.07 -155.07 -1.25 8.78 16 17 C -0.34 -7.74 9.52 -39.57 -0.38 -8.12 16 18 C 0.05 1.11 11.36 -16.61 -0.19 0.92 16 19 N -0.15 -3.33 3.69 -11.69 -0.04 -3.37 16 20 C -0.33 -6.94 10.17 -15.12 -0.15 -7.09 16 21 H 0.14 2.61 7.85 -52.49 -0.41 2.20 16 22 C 0.04 0.78 5.46 -17.44 -0.10 0.68 16 23 N -0.85 -18.99 10.90 55.50 0.60 -18.39 16 24 Si 0.96 15.78 29.57 -169.99 -5.03 10.76 16 25 H -0.26 -4.04 7.11 56.52 0.40 -3.64 16 26 H -0.27 -4.47 7.11 56.52 0.40 -4.07 16 27 H -0.27 -4.48 7.11 56.52 0.40 -4.08 16 28 N -0.43 -10.36 6.64 31.36 0.21 -10.15 16 29 H 0.45 10.88 6.63 -182.56 -1.21 9.67 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.25 7.04 -51.93 -0.37 0.89 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.38 7.15 -51.93 -0.37 1.01 16 39 H 0.17 4.08 5.78 -52.48 -0.30 3.77 16 40 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 41 H 0.30 6.05 8.31 -40.82 -0.34 5.71 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -27.23 332.99 -8.31 -35.54 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -6.76 Total: 20.57 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.87 Total: -0.87 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.65 Total: -49.27 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.33 Total: -21.74 kcal Atomic # 14 Polarization: 15.78 SS G_CDS: -5.03 Total: 10.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.23 -8.31 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529522971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.778 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds