Wall clock time and date at job start Tue Mar 31 2020 04:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41953 * 2 1 4 4 O 1.44427 * 110.37419 * 122.31386 * 2 1 3 5 5 C 1.44420 * 105.27420 * 159.34537 * 4 2 1 6 6 H 1.08991 * 110.37660 * 78.31543 * 5 4 2 7 7 C 1.53001 * 110.37062 * 200.65441 * 5 4 2 8 8 C 1.54483 * 104.80386 * 319.48128 * 5 4 2 9 9 H 1.08995 * 110.51342 * 265.34058 * 8 5 4 10 10 C 1.52997 * 110.51197 * 142.62556 * 8 5 4 11 11 C 1.54475 * 110.36901 * 237.69400 * 2 1 3 12 12 H 1.09005 * 110.63124 * 335.88782 * 11 2 1 13 13 C 1.50696 * 110.51264 * 98.54343 * 11 2 1 14 14 O 1.21604 * 120.00241 * 28.28421 * 13 11 2 15 15 N 1.32916 * 119.99967 * 208.00477 * 13 11 2 16 16 C 1.33298 * 119.99889 * 180.27507 * 15 13 11 17 17 C 1.41051 * 126.37169 * 0.02609 * 16 15 13 18 18 C 1.35290 * 108.21009 * 179.97438 * 17 16 15 19 19 N 1.36313 * 108.89352 * 0.02562 * 18 17 16 20 20 C 1.36569 * 125.84619 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99971 * 10.48920 * 20 19 18 22 22 C 1.39101 * 120.00185 * 190.49441 * 20 19 18 23 23 N 1.31333 * 119.99718 * 10.19773 * 22 20 19 24 24 Si 1.86799 * 119.99914 * 190.20204 * 22 20 19 25 25 H 1.48496 * 109.47262 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46921 * 119.99739 * 24 22 20 27 27 H 1.48500 * 109.47069 * 239.99370 * 24 22 20 28 28 N 1.37380 * 126.36625 * 179.71798 * 16 15 13 29 29 H 0.97000 * 126.33486 * 0.02562 * 28 16 15 30 30 H 1.09005 * 109.47470 * 182.31275 * 1 2 3 31 31 H 1.09008 * 109.46984 * 302.30689 * 1 2 3 32 32 H 1.08997 * 109.47523 * 62.30686 * 1 2 3 33 33 H 1.09002 * 109.47298 * 175.37733 * 7 5 4 34 34 H 1.08996 * 109.47172 * 295.38172 * 7 5 4 35 35 H 1.09002 * 109.47082 * 55.37690 * 7 5 4 36 36 H 1.09003 * 109.47147 * 307.00916 * 10 8 5 37 37 H 1.08996 * 109.47320 * 67.01020 * 10 8 5 38 38 H 1.08997 * 109.47088 * 187.01340 * 10 8 5 39 39 H 1.08004 * 125.89052 * 359.97438 * 17 16 15 40 40 H 1.08000 * 125.55327 * 179.97438 * 18 17 16 41 41 H 0.96999 * 119.99434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3874 -1.0871 0.7994 6 1 4.0525 -0.2324 0.9220 7 6 3.8602 -2.2594 1.6614 8 6 3.3178 -1.5057 -0.6860 9 1 3.1955 -2.5852 -0.7733 10 6 4.5713 -1.0447 -1.4322 11 6 2.0677 -0.7740 -1.2240 12 1 1.3284 -1.4918 -1.5795 13 6 2.4480 0.1802 -2.3267 14 8 2.8071 1.3101 -2.0561 15 7 2.3964 -0.2150 -3.5947 16 6 2.7381 0.6272 -4.5697 17 6 3.1721 1.9598 -4.4101 18 6 3.4206 2.4733 -5.6368 19 7 3.1615 1.5194 -6.5754 20 6 3.2969 1.6689 -7.9261 21 1 3.7933 2.5408 -8.3259 22 6 2.7955 0.6982 -8.7870 23 7 2.0214 -0.2554 -8.3219 24 14 3.2233 0.7508 -10.6046 25 1 4.1040 1.9160 -10.8723 26 1 3.9278 -0.5002 -10.9837 27 1 1.9776 0.8787 -11.4028 28 7 2.7388 0.3569 -5.9166 29 1 2.4902 -0.4825 -6.3345 30 1 -0.3634 -1.0268 0.0415 31 1 -0.3633 0.5493 0.8686 32 1 -0.3634 0.4776 -0.9099 33 1 4.8511 -2.5745 1.3344 34 1 3.9039 -1.9484 2.7052 35 1 3.1624 -3.0904 1.5589 36 1 4.7188 0.0230 -1.2699 37 1 5.4375 -1.5918 -1.0601 38 1 4.4508 -1.2368 -2.4983 39 1 3.2861 2.4803 -3.4706 40 1 3.7671 3.4760 -5.8394 41 1 1.6720 -0.9325 -8.9223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529522971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:49 Heat of formation + Delta-G solvation = -10.215782 kcal Electronic energy + Delta-G solvation = -24037.892400 eV Core-core repulsion = 20533.441627 eV Total energy + Delta-G solvation = -3504.450772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15426 -41.32591 -39.03415 -35.97379 -34.71843 -34.27135 -33.57581 -32.08460 -31.36445 -30.23739 -28.31147 -26.83279 -24.60349 -23.44572 -22.44045 -22.16023 -21.63420 -21.08383 -19.36865 -17.78927 -17.12925 -16.93544 -16.84480 -16.57120 -16.32528 -16.02311 -15.73342 -15.35073 -14.99241 -14.58369 -14.24096 -14.18387 -13.81856 -13.74976 -13.60523 -13.29456 -13.20370 -13.12577 -13.00073 -12.81889 -12.62960 -12.44258 -12.10321 -11.94270 -11.94042 -11.50101 -11.36261 -11.02519 -10.71731 -10.41087 -10.13509 -9.50265 -9.09310 -8.72720 -6.44737 0.48237 1.01656 1.40904 1.43824 1.57490 1.76982 2.09101 2.67578 2.81697 3.07582 3.27272 3.61621 3.69392 3.85044 3.91306 4.26068 4.28264 4.31300 4.39029 4.41191 4.54403 4.55170 4.67656 4.75247 4.76275 4.89077 4.93528 4.99166 5.04472 5.06659 5.08870 5.15748 5.22065 5.29622 5.33408 5.43471 5.52868 5.67000 5.92452 6.28212 6.57853 6.65521 7.16325 7.30877 8.05018 8.25748 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.003496 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.342020 B = 8006.738768 C = 8134.405777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.061 0.939 4 O -0.378 6.378 5 C 0.073 3.927 6 H 0.060 0.940 7 C -0.136 4.136 8 C -0.096 4.096 9 H 0.099 0.901 10 C -0.137 4.137 11 C -0.111 4.111 12 H 0.091 0.909 13 C 0.492 3.508 14 O -0.635 6.635 15 N -0.729 5.729 16 C 0.380 3.620 17 C -0.354 4.354 18 C 0.063 3.937 19 N -0.150 5.150 20 C -0.347 4.347 21 H 0.172 0.828 22 C -0.002 4.002 23 N -0.883 5.883 24 Si 1.034 2.966 25 H -0.239 1.239 26 H -0.273 1.273 27 H -0.272 1.272 28 N -0.447 5.447 29 H 0.447 0.553 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.160 0.840 40 H 0.220 0.780 41 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -1.574 4.217 5.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.026 3.974 3 H 0.079 0.921 4 O -0.298 6.298 5 C 0.015 3.985 6 H 0.078 0.922 7 C -0.193 4.193 8 C -0.115 4.115 9 H 0.118 0.882 10 C -0.195 4.195 11 C -0.133 4.133 12 H 0.109 0.891 13 C 0.278 3.722 14 O -0.522 6.522 15 N -0.497 5.497 16 C 0.139 3.861 17 C -0.387 4.387 18 C -0.090 4.090 19 N 0.085 4.915 20 C -0.474 4.474 21 H 0.189 0.811 22 C -0.209 4.209 23 N -0.516 5.516 24 Si 0.853 3.147 25 H -0.161 1.161 26 H -0.198 1.198 27 H -0.197 1.197 28 N -0.176 5.176 29 H 0.303 0.697 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.177 0.823 40 H 0.236 0.764 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.749 -2.166 3.942 5.271 hybrid contribution -0.058 0.192 -0.994 1.014 sum 2.690 -1.974 2.948 4.453 Atomic orbital electron populations 1.21729 0.91857 1.03325 1.02441 1.22834 0.96095 0.95104 0.83398 0.92138 1.89031 1.27902 1.74642 1.38256 1.23179 0.84067 0.98086 0.93160 0.92234 1.21787 1.02070 0.95941 0.99518 1.22409 0.93555 1.00725 0.94835 0.88246 1.21766 0.97404 1.00613 0.99687 1.22331 0.99341 0.97464 0.94115 0.89061 1.20486 0.77817 0.86226 0.87715 1.90439 1.51324 1.23621 1.86828 1.68639 1.44865 1.36501 0.99694 1.19406 0.91388 0.91714 0.83572 1.21938 1.21379 0.96594 0.98813 1.23025 1.03791 0.95067 0.87086 1.43099 1.42724 1.00491 1.05181 1.21232 1.39036 1.11691 0.75439 0.81144 1.26929 0.92213 0.93797 1.07959 1.69331 1.27092 1.14502 1.40687 0.84237 0.78855 0.79948 0.71669 1.16112 1.19806 1.19701 1.45514 1.61476 1.08203 1.02449 0.69722 0.90856 0.90630 0.92153 0.89436 0.91157 0.91390 0.94234 0.90118 0.94072 0.82254 0.76365 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.52 71.98 0.69 -3.50 16 2 C 0.08 3.04 3.42 31.10 0.11 3.14 16 3 H 0.06 2.50 6.88 -2.39 -0.02 2.49 16 4 O -0.38 -12.71 11.04 -148.98 -1.64 -14.36 16 5 C 0.07 2.16 3.48 31.10 0.11 2.27 16 6 H 0.06 1.87 7.80 -2.39 -0.02 1.85 16 7 C -0.14 -2.92 9.52 71.98 0.69 -2.23 16 8 C -0.10 -3.18 3.26 -9.77 -0.03 -3.21 16 9 H 0.10 2.91 7.87 -2.39 -0.02 2.89 16 10 C -0.14 -4.84 7.99 71.98 0.58 -4.26 16 11 C -0.11 -4.33 3.12 -10.52 -0.03 -4.36 16 12 H 0.09 3.51 7.88 -2.38 -0.02 3.49 16 13 C 0.49 23.44 4.72 87.94 0.41 23.86 16 14 O -0.63 -32.72 11.90 -4.04 -0.05 -32.76 16 15 N -0.73 -37.04 10.09 -309.74 -3.12 -40.17 16 16 C 0.38 19.35 8.07 133.81 1.08 20.43 16 17 C -0.35 -16.78 9.52 22.28 0.21 -16.57 16 18 C 0.06 2.57 11.36 83.32 0.95 3.51 16 19 N -0.15 -6.69 3.69 -190.90 -0.70 -7.39 16 20 C -0.35 -14.18 10.17 84.16 0.86 -13.32 16 21 H 0.17 5.77 7.85 -2.91 -0.02 5.75 16 22 C 0.00 -0.09 5.46 84.97 0.46 0.37 16 23 N -0.88 -39.39 10.90 21.69 0.24 -39.15 16 24 Si 1.03 30.48 29.57 68.60 2.03 32.51 16 25 H -0.24 -6.26 7.11 99.48 0.71 -5.55 16 26 H -0.27 -8.19 7.11 99.48 0.71 -7.48 16 27 H -0.27 -8.09 7.11 99.48 0.71 -7.38 16 28 N -0.45 -21.88 6.64 -54.71 -0.36 -22.25 16 29 H 0.45 22.28 6.63 -213.29 -1.41 20.86 16 30 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.57 7.04 -2.39 -0.02 1.55 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.67 7.15 -2.39 -0.02 1.66 16 39 H 0.16 7.93 5.78 -2.91 -0.02 7.91 16 40 H 0.22 6.45 8.06 -2.91 -0.02 6.42 16 41 H 0.30 12.30 8.31 -92.71 -0.77 11.53 16 Total: -1.00 -61.11 332.99 2.08 -59.03 By element: Atomic # 1 Polarization: 58.79 SS G_CDS: -0.37 Total: 58.42 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.07 Total: 6.12 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.95 Total: -108.96 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.69 Total: -47.12 kcal Atomic # 14 Polarization: 30.48 SS G_CDS: 2.03 Total: 32.51 kcal Total: -61.11 2.08 -59.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529522971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.817 kcal (2) G-P(sol) polarization free energy of solvation -61.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds