Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46799 * 2 1 4 4 C 1.38041 * 126.29557 * 270.20648 * 3 2 1 5 5 C 1.47437 * 126.41280 * 359.96821 * 4 3 2 6 6 O 1.21605 * 119.99994 * 0.32400 * 5 4 3 7 7 N 1.34769 * 119.99862 * 180.31559 * 5 4 3 8 8 C 1.47023 * 125.64998 * 0.03133 * 7 5 4 9 9 C 1.54325 * 107.27197 * 181.01660 * 8 7 5 10 10 C 1.55157 * 102.94186 * 22.19473 * 9 8 7 11 11 O 1.42905 * 111.00316 * 82.57101 * 10 9 8 12 12 C 1.50699 * 111.00318 * 206.38281 * 10 9 8 13 13 H 1.08000 * 119.99641 * 118.09760 * 12 10 9 14 14 C 1.37873 * 120.00215 * 298.08892 * 12 10 9 15 15 N 1.31511 * 120.00025 * 187.05109 * 14 12 10 16 16 Si 1.86800 * 119.99929 * 7.05540 * 14 12 10 17 17 H 1.48503 * 109.47240 * 84.71726 * 16 14 12 18 18 H 1.48502 * 109.47263 * 204.71767 * 16 14 12 19 19 H 1.48504 * 109.46974 * 324.71329 * 16 14 12 20 20 C 1.47432 * 125.64941 * 179.71792 * 7 5 4 21 21 C 1.41287 * 107.17421 * 180.26297 * 4 3 2 22 22 N 1.30455 * 108.01794 * 359.74150 * 21 4 3 23 23 N 1.34258 * 126.29035 * 90.02576 * 3 2 1 24 24 C 1.46508 * 125.75332 * 0.02562 * 23 3 2 25 25 H 1.08997 * 109.46957 * 299.99559 * 1 2 3 26 26 H 1.09003 * 109.47338 * 60.00281 * 1 2 3 27 27 H 1.09005 * 109.46650 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47359 * 240.00178 * 2 1 3 29 29 H 1.08995 * 109.47643 * 119.99821 * 2 1 3 30 30 H 1.09000 * 109.88369 * 300.43879 * 8 7 5 31 31 H 1.08999 * 109.88160 * 61.60256 * 8 7 5 32 32 H 1.09005 * 110.71909 * 140.55736 * 9 8 7 33 33 H 1.08996 * 110.72607 * 263.64902 * 9 8 7 34 34 H 0.96703 * 113.99394 * 180.02562 * 11 10 9 35 35 H 0.97002 * 120.00254 * 180.02562 * 15 14 12 36 36 H 1.09001 * 110.36404 * 274.75273 * 20 7 5 37 37 H 1.09001 * 110.36021 * 37.07388 * 20 7 5 38 38 H 1.07998 * 125.99158 * 179.77210 * 21 4 3 39 39 H 1.08998 * 109.46571 * 269.71985 * 24 23 3 40 40 H 1.08998 * 109.46975 * 29.71187 * 24 23 3 41 41 H 1.08994 * 109.47393 * 149.71909 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3008 2.1927 -1.1126 5 6 2.1506 1.7809 -2.5203 6 8 1.7493 0.6646 -2.7878 7 7 2.4579 2.6419 -3.5106 8 6 2.9517 4.0149 -3.3299 9 6 3.1394 4.6230 -4.7358 10 6 2.2043 3.7542 -5.6179 11 8 0.8537 4.2146 -5.5406 12 6 2.6816 3.7270 -7.0471 13 1 2.9749 2.7917 -7.5007 14 6 2.7437 4.8959 -7.7756 15 7 3.0259 4.8563 -9.0595 16 14 2.4269 6.5357 -6.9390 17 1 3.6817 7.0212 -6.3103 18 1 1.9633 7.5238 -7.9460 19 1 1.3839 6.3658 -5.8956 20 6 2.3607 2.3607 -4.9546 21 6 2.7531 3.4486 -0.6498 22 7 2.7472 3.4241 0.6545 23 7 2.2976 2.1699 1.0822 24 6 2.1481 1.7437 2.4759 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2239 4.5995 -2.7672 31 1 3.9054 3.9994 -2.8024 32 1 2.8236 5.6662 -4.7501 33 1 4.1758 4.5310 -5.0606 34 1 0.2322 3.7019 -6.0754 35 1 3.0700 5.6787 -9.5720 36 1 3.2677 1.8696 -5.3073 37 1 1.4878 1.7419 -5.1625 38 1 3.0511 4.2829 -1.2675 39 1 1.1436 1.9847 2.8237 40 1 2.3085 0.6679 2.5459 41 1 2.8809 2.2614 3.0947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = 8.098687 kcal Electronic energy + Delta-G solvation = -24319.522274 eV Core-core repulsion = 20815.865676 eV Total energy + Delta-G solvation = -3503.656597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54544 -39.27859 -37.30839 -34.83395 -34.09544 -33.06995 -32.42279 -30.43506 -29.30878 -28.60985 -27.09572 -25.22293 -23.89196 -23.09522 -21.36638 -20.60247 -19.69180 -18.71873 -17.47880 -17.02362 -16.13845 -15.79318 -15.32895 -15.10554 -14.77973 -14.54613 -14.38455 -14.17929 -13.53047 -13.35595 -13.26941 -13.04534 -12.87715 -12.81231 -12.43543 -12.37909 -11.99670 -11.79152 -11.37760 -11.27971 -11.26398 -11.06390 -10.76188 -10.55221 -10.33271 -10.02585 -9.50617 -9.41772 -9.03302 -8.76945 -8.64341 -8.52250 -7.96373 -6.23343 -4.34748 1.51705 2.24301 2.24834 3.28137 3.40568 3.50689 3.57056 3.73401 4.32955 4.37083 4.40035 4.74258 4.81309 4.91542 5.04869 5.07938 5.10871 5.15482 5.19724 5.30582 5.44429 5.50623 5.54945 5.56566 5.73489 5.79034 5.93852 6.08356 6.12499 6.13318 6.39179 6.47087 6.59187 6.65168 6.75669 6.81215 7.13667 7.46891 7.51385 8.04636 8.18577 8.65054 8.74486 8.93168 9.40101 10.87178 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.004277 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.294920 B = 6544.485302 C = 7113.942897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C 0.154 3.846 4 C -0.284 4.284 5 C 0.605 3.395 6 O -0.558 6.558 7 N -0.603 5.603 8 C 0.099 3.901 9 C -0.130 4.130 10 C 0.217 3.783 11 O -0.572 6.572 12 C -0.553 4.553 13 H 0.080 0.920 14 C 0.090 3.910 15 N -0.885 5.885 16 Si 0.875 3.125 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.231 1.231 20 C 0.097 3.903 21 C 0.072 3.928 22 N -0.304 5.304 23 N -0.366 5.366 24 C 0.098 3.902 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.367 0.633 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.200 0.800 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -5.502 20.723 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C 0.022 3.978 4 C -0.298 4.298 5 C 0.394 3.606 6 O -0.439 6.439 7 N -0.335 5.335 8 C -0.024 4.024 9 C -0.168 4.168 10 C 0.176 3.824 11 O -0.378 6.378 12 C -0.590 4.590 13 H 0.098 0.902 14 C -0.115 4.115 15 N -0.521 5.521 16 Si 0.702 3.298 17 H -0.208 1.208 18 H -0.227 1.227 19 H -0.155 1.155 20 C -0.025 4.025 21 C -0.115 4.115 22 N -0.123 5.123 23 N -0.146 5.146 24 C -0.044 4.044 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.214 0.786 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.217 0.783 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.529 -4.964 22.123 22.724 hybrid contribution -0.310 0.279 -0.768 0.874 sum -1.839 -4.685 21.354 21.939 Atomic orbital electron populations 1.21631 0.93472 1.02367 1.02268 1.20430 0.97088 0.88421 1.04607 1.21489 0.95309 0.94795 0.86240 1.20039 1.19890 0.96202 0.93683 1.16771 0.77154 0.83691 0.82935 1.90689 1.48773 1.20342 1.84068 1.48255 1.64518 1.13625 1.07064 1.22330 0.97775 0.83088 0.99251 1.23042 1.01390 0.99855 0.92521 1.20112 0.80830 0.87440 0.93979 1.86436 1.19174 1.59942 1.72267 1.21146 1.47140 0.96473 0.94251 0.90241 1.24934 0.92624 0.99624 0.94321 1.69934 1.46772 1.28710 1.06722 0.87077 0.79932 0.82532 0.80226 1.20803 1.22689 1.15461 1.23029 1.01740 1.00027 0.77710 1.24800 0.96871 0.98002 0.91835 1.77186 1.22379 0.99275 1.13502 1.48330 1.50041 1.10048 1.06163 1.21910 1.03642 1.01160 0.77640 0.93380 0.91463 0.91562 0.86982 0.91049 0.91565 0.91859 0.90697 0.89175 0.78607 0.92302 0.90939 0.91166 0.78331 0.90447 0.89326 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.07 -0.73 5.61 -27.88 -0.16 -0.89 16 3 C 0.15 2.07 6.26 -81.60 -0.51 1.56 16 4 C -0.28 -4.52 6.09 -105.06 -0.64 -5.15 16 5 C 0.60 11.20 7.85 -12.52 -0.10 11.10 16 6 O -0.56 -11.33 15.10 5.27 0.08 -11.25 16 7 N -0.60 -11.28 3.32 -171.64 -0.57 -11.85 16 8 C 0.10 1.65 4.98 -3.06 -0.02 1.64 16 9 C -0.13 -2.58 4.62 -24.90 -0.12 -2.69 16 10 C 0.22 4.78 0.71 -89.51 -0.06 4.72 16 11 O -0.57 -12.56 10.84 -35.23 -0.38 -12.94 16 12 C -0.55 -14.45 8.83 -34.44 -0.30 -14.76 16 13 H 0.08 2.26 8.03 -52.49 -0.42 1.84 16 14 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 15 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 16 Si 0.87 20.77 23.98 -169.99 -4.08 16.70 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.23 -5.40 5.43 56.52 0.31 -5.09 16 20 C 0.10 1.98 6.10 -2.41 -0.01 1.97 16 21 C 0.07 1.05 10.45 -16.98 -0.18 0.87 16 22 N -0.30 -4.36 12.50 30.86 0.39 -3.97 16 23 N -0.37 -4.45 3.98 -63.34 -0.25 -4.70 16 24 C 0.10 0.68 11.25 59.85 0.67 1.35 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.11 1.47 6.52 -51.93 -0.34 1.13 16 29 H 0.07 0.56 7.05 -51.93 -0.37 0.19 16 30 H 0.07 1.04 6.83 -51.93 -0.35 0.69 16 31 H 0.06 0.90 7.00 -51.93 -0.36 0.53 16 32 H 0.07 1.51 4.80 -51.93 -0.25 1.26 16 33 H 0.09 1.76 8.04 -51.93 -0.42 1.34 16 34 H 0.37 7.20 9.06 45.56 0.41 7.61 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 37 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 38 H 0.20 2.57 4.47 -52.49 -0.23 2.34 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.41 7.01 -51.93 -0.36 0.05 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -33.14 325.33 -5.17 -38.31 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.87 Total: 8.84 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.15 Total: 1.03 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.34 Total: -45.58 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.30 Total: -24.19 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.08 Total: 16.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.14 -5.17 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.408 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds