Wall clock time and date at job start Tue Mar 31 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46799 * 2 1 4 4 C 1.38041 * 126.29557 * 270.20648 * 3 2 1 5 5 C 1.47437 * 126.41280 * 359.96821 * 4 3 2 6 6 O 1.21605 * 119.99994 * 0.32400 * 5 4 3 7 7 N 1.34769 * 119.99862 * 180.31559 * 5 4 3 8 8 C 1.47023 * 125.64998 * 0.03133 * 7 5 4 9 9 C 1.54325 * 107.27197 * 181.01660 * 8 7 5 10 10 C 1.55157 * 102.94186 * 22.19473 * 9 8 7 11 11 O 1.42905 * 111.00316 * 82.57101 * 10 9 8 12 12 C 1.50699 * 111.00318 * 206.38281 * 10 9 8 13 13 H 1.08000 * 119.99641 * 118.09760 * 12 10 9 14 14 C 1.37873 * 120.00215 * 298.08892 * 12 10 9 15 15 N 1.31511 * 120.00025 * 187.05109 * 14 12 10 16 16 Si 1.86800 * 119.99929 * 7.05540 * 14 12 10 17 17 H 1.48503 * 109.47240 * 84.71726 * 16 14 12 18 18 H 1.48502 * 109.47263 * 204.71767 * 16 14 12 19 19 H 1.48504 * 109.46974 * 324.71329 * 16 14 12 20 20 C 1.47432 * 125.64941 * 179.71792 * 7 5 4 21 21 C 1.41287 * 107.17421 * 180.26297 * 4 3 2 22 22 N 1.30455 * 108.01794 * 359.74150 * 21 4 3 23 23 N 1.34258 * 126.29035 * 90.02576 * 3 2 1 24 24 C 1.46508 * 125.75332 * 0.02562 * 23 3 2 25 25 H 1.08997 * 109.46957 * 299.99559 * 1 2 3 26 26 H 1.09003 * 109.47338 * 60.00281 * 1 2 3 27 27 H 1.09005 * 109.46650 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47359 * 240.00178 * 2 1 3 29 29 H 1.08995 * 109.47643 * 119.99821 * 2 1 3 30 30 H 1.09000 * 109.88369 * 300.43879 * 8 7 5 31 31 H 1.08999 * 109.88160 * 61.60256 * 8 7 5 32 32 H 1.09005 * 110.71909 * 140.55736 * 9 8 7 33 33 H 1.08996 * 110.72607 * 263.64902 * 9 8 7 34 34 H 0.96703 * 113.99394 * 180.02562 * 11 10 9 35 35 H 0.97002 * 120.00254 * 180.02562 * 15 14 12 36 36 H 1.09001 * 110.36404 * 274.75273 * 20 7 5 37 37 H 1.09001 * 110.36021 * 37.07388 * 20 7 5 38 38 H 1.07998 * 125.99158 * 179.77210 * 21 4 3 39 39 H 1.08998 * 109.46571 * 269.71985 * 24 23 3 40 40 H 1.08998 * 109.46975 * 29.71187 * 24 23 3 41 41 H 1.08994 * 109.47393 * 149.71909 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3008 2.1927 -1.1126 5 6 2.1506 1.7809 -2.5203 6 8 1.7493 0.6646 -2.7878 7 7 2.4579 2.6419 -3.5106 8 6 2.9517 4.0149 -3.3299 9 6 3.1394 4.6230 -4.7358 10 6 2.2043 3.7542 -5.6179 11 8 0.8537 4.2146 -5.5406 12 6 2.6816 3.7270 -7.0471 13 1 2.9749 2.7917 -7.5007 14 6 2.7437 4.8959 -7.7756 15 7 3.0259 4.8563 -9.0595 16 14 2.4269 6.5357 -6.9390 17 1 3.6817 7.0212 -6.3103 18 1 1.9633 7.5238 -7.9460 19 1 1.3839 6.3658 -5.8956 20 6 2.3607 2.3607 -4.9546 21 6 2.7531 3.4486 -0.6498 22 7 2.7472 3.4241 0.6545 23 7 2.2976 2.1699 1.0822 24 6 2.1481 1.7437 2.4759 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2239 4.5995 -2.7672 31 1 3.9054 3.9994 -2.8024 32 1 2.8236 5.6662 -4.7501 33 1 4.1758 4.5310 -5.0606 34 1 0.2322 3.7019 -6.0754 35 1 3.0700 5.6787 -9.5720 36 1 3.2677 1.8696 -5.3073 37 1 1.4878 1.7419 -5.1625 38 1 3.0511 4.2829 -1.2675 39 1 1.1436 1.9847 2.8237 40 1 2.3085 0.6679 2.5459 41 1 2.8809 2.2614 3.0947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:10 Heat of formation + Delta-G solvation = -17.827285 kcal Electronic energy + Delta-G solvation = -24320.646508 eV Core-core repulsion = 20815.865676 eV Total energy + Delta-G solvation = -3504.780832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58775 -40.75762 -38.87449 -36.28544 -35.19080 -34.48920 -33.95480 -32.01439 -30.47162 -30.01379 -28.22134 -26.78338 -25.02116 -24.37722 -22.58524 -21.89705 -21.27176 -19.94435 -19.27486 -18.30314 -17.18829 -17.09323 -16.89499 -16.46770 -16.33539 -16.13934 -15.41705 -15.19125 -14.95281 -14.85159 -14.68118 -14.29968 -14.14836 -13.81669 -13.64453 -13.49132 -13.26390 -13.03676 -12.93821 -12.83226 -12.57263 -12.36329 -12.16384 -12.11435 -11.78229 -11.69350 -10.99980 -10.84357 -10.74052 -10.43467 -10.35941 -9.79550 -9.40801 -8.35261 -6.50180 0.46664 1.10967 1.39523 1.40327 1.48184 1.67756 2.10447 2.40924 2.41969 3.00429 3.41042 3.47398 3.55152 3.80022 3.90357 3.95026 4.13764 4.18522 4.22111 4.29016 4.39630 4.43981 4.46172 4.53168 4.65042 4.66485 4.72750 4.80932 4.96210 4.97486 5.08896 5.18344 5.21202 5.30301 5.37591 5.45479 5.54825 5.88318 6.08120 6.48363 6.60775 6.64236 7.13410 7.23806 7.30805 8.78974 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.004277 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.294920 B = 6544.485302 C = 7113.942897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C 0.162 3.838 4 C -0.318 4.318 5 C 0.601 3.399 6 O -0.586 6.586 7 N -0.608 5.608 8 C 0.104 3.896 9 C -0.132 4.132 10 C 0.216 3.784 11 O -0.574 6.574 12 C -0.552 4.552 13 H 0.040 0.960 14 C 0.040 3.960 15 N -0.934 5.934 16 Si 0.936 3.064 17 H -0.262 1.262 18 H -0.309 1.309 19 H -0.221 1.221 20 C 0.105 3.895 21 C 0.070 3.930 22 N -0.319 5.319 23 N -0.357 5.357 24 C 0.083 3.917 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.375 0.625 35 H 0.269 0.731 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.212 0.788 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -4.971 24.641 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C 0.027 3.973 4 C -0.332 4.332 5 C 0.393 3.607 6 O -0.469 6.469 7 N -0.339 5.339 8 C -0.018 4.018 9 C -0.170 4.170 10 C 0.175 3.825 11 O -0.381 6.381 12 C -0.590 4.590 13 H 0.058 0.942 14 C -0.160 4.160 15 N -0.573 5.573 16 Si 0.762 3.238 17 H -0.188 1.188 18 H -0.237 1.237 19 H -0.144 1.144 20 C -0.018 4.018 21 C -0.116 4.116 22 N -0.138 5.138 23 N -0.136 5.136 24 C -0.056 4.056 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.228 0.772 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.718 -4.429 26.097 26.525 hybrid contribution -0.281 -0.041 -1.938 1.958 sum -1.999 -4.470 24.159 24.650 Atomic orbital electron populations 1.21593 0.92861 1.03350 1.01427 1.20495 0.97465 0.87086 1.05325 1.21803 0.93896 0.95516 0.86087 1.19947 1.22887 0.97770 0.92639 1.17199 0.76355 0.83199 0.83926 1.90666 1.50032 1.21503 1.84662 1.48262 1.65034 1.14603 1.06031 1.22422 0.99854 0.81850 0.97655 1.23007 1.00560 0.99643 0.93784 1.19991 0.81109 0.89238 0.92143 1.86394 1.19055 1.60263 1.72387 1.21354 1.46292 0.94862 0.96488 0.94160 1.25727 0.92467 1.03224 0.94612 1.70064 1.49081 1.29657 1.08468 0.86120 0.80725 0.77881 0.79116 1.18769 1.23677 1.14389 1.22710 1.00769 0.98916 0.79415 1.24930 0.96704 0.97838 0.92123 1.77139 1.22840 1.00602 1.13249 1.48718 1.48252 1.09015 1.07606 1.22419 1.05138 1.03120 0.74924 0.91491 0.94913 0.89738 0.89488 0.87056 0.89924 0.88725 0.90394 0.89213 0.77712 0.92253 0.92016 0.92249 0.77214 0.88678 0.86493 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.06 -1.27 5.61 29.85 0.17 -1.10 16 3 C 0.16 3.97 6.26 42.14 0.26 4.23 16 4 C -0.32 -9.64 6.09 -20.15 -0.12 -9.77 16 5 C 0.60 22.08 7.85 86.67 0.68 22.76 16 6 O -0.59 -24.18 15.10 -4.05 -0.06 -24.24 16 7 N -0.61 -22.37 3.32 -815.20 -2.71 -25.08 16 8 C 0.10 3.26 4.98 86.73 0.43 3.70 16 9 C -0.13 -5.01 4.62 31.78 0.15 -4.86 16 10 C 0.22 9.51 0.71 -10.07 -0.01 9.51 16 11 O -0.57 -24.75 10.84 -148.98 -1.62 -26.36 16 12 C -0.55 -29.71 8.83 25.60 0.23 -29.48 16 13 H 0.04 2.42 8.03 -2.91 -0.02 2.40 16 14 C 0.04 2.24 5.47 84.65 0.46 2.70 16 15 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 16 Si 0.94 42.68 23.98 68.60 1.65 44.32 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.22 -9.65 5.43 99.48 0.54 -9.11 16 20 C 0.10 4.38 6.10 86.93 0.53 4.91 16 21 C 0.07 1.90 10.45 85.65 0.89 2.79 16 22 N -0.32 -8.24 12.50 -56.27 -0.70 -8.94 16 23 N -0.36 -7.49 3.98 -354.30 -1.41 -8.90 16 24 C 0.08 0.79 11.25 127.77 1.44 2.23 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.09 2.21 6.52 -2.39 -0.02 2.19 16 29 H 0.11 1.26 7.05 -2.39 -0.02 1.24 16 30 H 0.08 2.35 6.83 -2.39 -0.02 2.34 16 31 H 0.09 2.40 7.00 -2.39 -0.02 2.38 16 32 H 0.08 2.92 4.80 -2.38 -0.01 2.90 16 33 H 0.09 3.38 8.04 -2.39 -0.02 3.36 16 34 H 0.37 14.71 9.06 -74.06 -0.67 14.03 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.06 2.67 8.04 -2.39 -0.02 2.65 16 37 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 38 H 0.21 4.84 4.47 -2.91 -0.01 4.82 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.12 0.48 7.01 -2.39 -0.02 0.46 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -73.85 325.33 1.50 -72.35 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.23 Total: 26.83 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.82 Total: 5.87 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.52 Total: -98.78 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -1.68 Total: -50.60 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.65 Total: 44.32 kcal Total: -73.85 1.50 -72.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.527 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds