Wall clock time and date at job start Tue Mar 31 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39875 * 126.03611 * 2 1 4 4 N 1.30842 * 108.19858 * 179.97438 * 3 2 1 5 5 N 1.40079 * 108.20527 * 0.02562 * 4 3 2 6 6 C 1.46505 * 126.03693 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 305.02478 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64803 * 0.02562 * 10 8 7 12 12 C 1.54908 * 104.83544 * 204.09374 * 11 10 8 13 13 C 1.55154 * 101.57909 * 322.99025 * 12 11 10 14 14 O 1.42896 * 110.72322 * 277.13808 * 13 12 11 15 15 C 1.50706 * 110.71987 * 154.04243 * 13 12 11 16 16 H 1.08000 * 119.99699 * 241.45574 * 15 13 12 17 17 C 1.37876 * 119.99871 * 61.45154 * 15 13 12 18 18 N 1.31516 * 119.99984 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99983 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47079 * 59.99972 * 19 17 15 21 21 H 1.48495 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46965 * 300.00330 * 19 17 15 23 23 C 1.47019 * 125.64846 * 179.71752 * 10 8 7 24 24 C 1.34943 * 107.92838 * 0.26273 * 5 4 3 25 25 H 1.09004 * 109.47014 * 89.97422 * 1 2 3 26 26 H 1.08998 * 109.47302 * 209.97768 * 1 2 3 27 27 H 1.09000 * 109.47315 * 329.97670 * 1 2 3 28 28 H 1.07994 * 125.90033 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47068 * 65.02538 * 6 5 4 30 30 H 1.09001 * 109.47372 * 185.02626 * 6 5 4 31 31 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 33 33 H 1.09002 * 110.37084 * 322.93436 * 11 10 8 34 34 H 1.09002 * 110.36380 * 85.14554 * 11 10 8 35 35 H 1.08991 * 111.00200 * 81.06563 * 12 11 10 36 36 H 1.09001 * 111.00401 * 204.92155 * 12 11 10 37 37 H 0.96700 * 114.00296 * 298.54642 * 14 13 12 38 38 H 0.97002 * 119.99924 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.88251 * 298.39485 * 23 10 8 40 40 H 1.09004 * 109.88041 * 59.56299 * 23 10 8 41 41 H 1.08005 * 126.13132 * 179.73653 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0003 6 6 4.7746 -1.5247 0.0003 7 6 5.6717 -1.1494 -1.1809 8 6 6.8963 -2.0276 -1.1806 9 8 7.0374 -2.8712 -0.3207 10 7 7.8347 -1.8758 -2.1360 11 6 7.7908 -0.8945 -3.2353 12 6 8.6877 -1.5001 -4.3437 13 6 9.8183 -2.1544 -3.5065 14 8 10.8074 -1.1870 -3.1490 15 6 10.4438 -3.3006 -4.2589 16 1 10.4005 -4.3005 -3.8531 17 6 11.0713 -3.0726 -5.4652 18 7 11.1244 -1.8549 -5.9590 19 14 11.8460 -4.4934 -6.3982 20 1 10.8037 -5.5008 -6.7207 21 1 12.4524 -3.9878 -7.6559 22 1 12.8984 -5.1212 -5.5593 23 6 9.0749 -2.6571 -2.2508 24 6 2.3032 -1.0941 -0.0063 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9950 2.1578 0.0004 29 1 5.3227 -1.3842 0.9319 30 1 4.4729 -2.5683 -0.0900 31 1 5.1236 -1.2899 -2.1125 32 1 5.9735 -0.1059 -1.0908 33 1 6.7694 -0.7753 -3.5969 34 1 8.1895 0.0643 -2.9040 35 1 8.1447 -2.2491 -4.9198 36 1 9.0845 -0.7208 -4.9944 37 1 11.2519 -0.7809 -3.9057 38 1 11.5662 -1.6944 -6.8076 39 1 9.6925 -2.5043 -1.3658 40 1 8.8375 -3.7152 -2.3616 41 1 1.9724 -2.1222 -0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:18 Heat of formation + Delta-G solvation = -12.299125 kcal Electronic energy + Delta-G solvation = -23157.897910 eV Core-core repulsion = 19653.356797 eV Total energy + Delta-G solvation = -3504.541113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32421 -39.62842 -37.46326 -34.55903 -34.38923 -32.26399 -31.88868 -30.76393 -29.59920 -28.39309 -26.68620 -25.31495 -23.97359 -22.31786 -20.88593 -20.38456 -19.72929 -18.75824 -17.49450 -17.13771 -16.14608 -15.92966 -15.55907 -15.00054 -14.69128 -14.43954 -14.29427 -14.13041 -13.53859 -13.37639 -13.13923 -13.01881 -12.87392 -12.33601 -12.13977 -12.09240 -12.01643 -11.66835 -11.43785 -11.40176 -11.36401 -10.92062 -10.69129 -10.61713 -10.54839 -10.16936 -9.65599 -9.52907 -9.38924 -8.71690 -8.45270 -8.28631 -8.12095 -6.33194 -4.41019 1.77715 2.35027 2.66521 2.90266 3.18896 3.23907 3.26853 3.45298 4.22951 4.37638 4.64629 4.72710 4.84064 4.91417 4.96516 5.10436 5.21893 5.30387 5.47376 5.51358 5.52931 5.65615 5.72027 5.73676 5.85310 5.86710 5.95899 5.98911 6.14618 6.38564 6.54549 6.60478 6.83073 6.88466 6.89493 7.23247 7.29211 7.59701 7.68353 7.96355 7.98895 8.45557 8.61362 9.25212 9.34380 10.74366 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002843 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.141052 B = 9846.516457 C = 9933.891045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.045 3.955 4 N -0.293 5.293 5 N -0.369 5.369 6 C 0.151 3.849 7 C -0.147 4.147 8 C 0.527 3.473 9 O -0.559 6.559 10 N -0.604 5.604 11 C 0.093 3.907 12 C -0.135 4.135 13 C 0.247 3.753 14 O -0.585 6.585 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.122 3.878 24 C 0.055 3.945 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.180 0.820 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.382 0.618 38 H 0.269 0.731 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.989 4.204 6.425 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.261 4.261 3 C -0.141 4.141 4 N -0.114 5.114 5 N -0.151 5.151 6 C 0.030 3.970 7 C -0.187 4.187 8 C 0.314 3.686 9 O -0.439 6.439 10 N -0.336 5.336 11 C -0.029 4.029 12 C -0.173 4.173 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.001 3.999 24 C -0.091 4.091 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.197 0.803 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.233 0.767 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.712 3.951 7.381 17.803 hybrid contribution -0.218 -0.749 -1.315 1.529 sum -15.930 3.202 6.066 17.344 Atomic orbital electron populations 1.20023 0.89440 1.01955 1.01416 1.20140 0.97060 0.91928 1.16951 1.23794 0.90012 0.99754 1.00522 1.77353 1.21230 0.89003 1.23801 1.48716 1.05529 1.04736 1.56076 1.21465 0.83116 0.92504 0.99917 1.21821 0.95021 1.01992 0.99891 1.19845 0.83663 0.84197 0.80891 1.90680 1.78860 1.36765 1.37610 1.48636 1.21168 1.36719 1.27112 1.22560 1.00081 0.92191 0.88110 1.23307 0.97087 1.00826 0.96109 1.19475 0.85082 0.87152 0.87609 1.86139 1.55841 1.59065 1.38399 1.21456 1.36915 0.94242 1.04781 0.91807 1.24986 0.94955 0.96249 0.96820 1.69683 1.43478 1.19874 1.20470 0.86459 0.79610 0.81989 0.78837 1.20071 1.21085 1.19963 1.22099 0.83242 0.94926 0.99679 1.22380 0.84203 1.00121 1.02400 0.92255 0.92308 0.92015 0.80269 0.88742 0.87720 0.88644 0.87677 0.92135 0.91704 0.91412 0.89230 0.76733 0.92111 0.91949 0.90881 0.81088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.37 36.00 0.37 -0.11 16 2 C -0.25 -2.46 6.10 -105.05 -0.64 -3.10 16 3 C 0.05 0.49 11.96 -17.36 -0.21 0.29 16 4 N -0.29 -3.92 12.42 30.63 0.38 -3.54 16 5 N -0.37 -4.50 3.68 -61.36 -0.23 -4.72 16 6 C 0.15 1.83 5.80 -4.04 -0.02 1.81 16 7 C -0.15 -1.97 4.89 -27.89 -0.14 -2.11 16 8 C 0.53 9.27 7.85 -10.99 -0.09 9.19 16 9 O -0.56 -11.29 16.31 5.55 0.09 -11.20 16 10 N -0.60 -11.58 3.33 -170.51 -0.57 -12.15 16 11 C 0.09 1.65 6.68 -2.53 -0.02 1.63 16 12 C -0.13 -2.83 5.47 -24.58 -0.13 -2.97 16 13 C 0.25 5.84 0.84 -89.93 -0.08 5.76 16 14 O -0.59 -14.47 13.06 -35.23 -0.46 -14.93 16 15 C -0.54 -13.78 8.23 -34.44 -0.28 -14.06 16 16 H 0.06 1.65 7.58 -52.49 -0.40 1.25 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -22.61 10.67 55.43 0.59 -22.02 16 19 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.12 2.70 6.23 -3.06 -0.02 2.68 16 24 C 0.06 0.56 11.36 -17.23 -0.20 0.37 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.09 1.21 8.10 -51.93 -0.42 0.78 16 30 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 32 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 36 H 0.09 1.96 7.53 -51.93 -0.39 1.57 16 37 H 0.38 9.42 7.46 45.56 0.34 9.76 16 38 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 39 H 0.06 1.43 8.07 -51.93 -0.42 1.02 16 40 H 0.07 1.64 7.67 -51.93 -0.40 1.24 16 41 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -29.35 344.32 -6.98 -36.33 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.41 Total: 10.96 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.54 Total: 1.12 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.18 Total: -42.43 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.37 Total: -26.13 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.35 -6.98 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.027 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds