Wall clock time and date at job start Tue Mar 31 2020 03:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39875 * 126.03611 * 2 1 4 4 N 1.30842 * 108.19858 * 179.97438 * 3 2 1 5 5 N 1.40079 * 108.20527 * 0.02562 * 4 3 2 6 6 C 1.46505 * 126.03693 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 305.02478 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64803 * 0.02562 * 10 8 7 12 12 C 1.54908 * 104.83544 * 204.09374 * 11 10 8 13 13 C 1.55154 * 101.57909 * 322.99025 * 12 11 10 14 14 O 1.42896 * 110.72322 * 277.13808 * 13 12 11 15 15 C 1.50706 * 110.71987 * 154.04243 * 13 12 11 16 16 H 1.08000 * 119.99699 * 241.45574 * 15 13 12 17 17 C 1.37876 * 119.99871 * 61.45154 * 15 13 12 18 18 N 1.31516 * 119.99984 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99983 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47079 * 59.99972 * 19 17 15 21 21 H 1.48495 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46965 * 300.00330 * 19 17 15 23 23 C 1.47019 * 125.64846 * 179.71752 * 10 8 7 24 24 C 1.34943 * 107.92838 * 0.26273 * 5 4 3 25 25 H 1.09004 * 109.47014 * 89.97422 * 1 2 3 26 26 H 1.08998 * 109.47302 * 209.97768 * 1 2 3 27 27 H 1.09000 * 109.47315 * 329.97670 * 1 2 3 28 28 H 1.07994 * 125.90033 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47068 * 65.02538 * 6 5 4 30 30 H 1.09001 * 109.47372 * 185.02626 * 6 5 4 31 31 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 33 33 H 1.09002 * 110.37084 * 322.93436 * 11 10 8 34 34 H 1.09002 * 110.36380 * 85.14554 * 11 10 8 35 35 H 1.08991 * 111.00200 * 81.06563 * 12 11 10 36 36 H 1.09001 * 111.00401 * 204.92155 * 12 11 10 37 37 H 0.96700 * 114.00296 * 298.54642 * 14 13 12 38 38 H 0.97002 * 119.99924 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.88251 * 298.39485 * 23 10 8 40 40 H 1.09004 * 109.88041 * 59.56299 * 23 10 8 41 41 H 1.08005 * 126.13132 * 179.73653 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0003 6 6 4.7746 -1.5247 0.0003 7 6 5.6717 -1.1494 -1.1809 8 6 6.8963 -2.0276 -1.1806 9 8 7.0374 -2.8712 -0.3207 10 7 7.8347 -1.8758 -2.1360 11 6 7.7908 -0.8945 -3.2353 12 6 8.6877 -1.5001 -4.3437 13 6 9.8183 -2.1544 -3.5065 14 8 10.8074 -1.1870 -3.1490 15 6 10.4438 -3.3006 -4.2589 16 1 10.4005 -4.3005 -3.8531 17 6 11.0713 -3.0726 -5.4652 18 7 11.1244 -1.8549 -5.9590 19 14 11.8460 -4.4934 -6.3982 20 1 10.8037 -5.5008 -6.7207 21 1 12.4524 -3.9878 -7.6559 22 1 12.8984 -5.1212 -5.5593 23 6 9.0749 -2.6571 -2.2508 24 6 2.3032 -1.0941 -0.0063 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9950 2.1578 0.0004 29 1 5.3227 -1.3842 0.9319 30 1 4.4729 -2.5683 -0.0900 31 1 5.1236 -1.2899 -2.1125 32 1 5.9735 -0.1059 -1.0908 33 1 6.7694 -0.7753 -3.5969 34 1 8.1895 0.0643 -2.9040 35 1 8.1447 -2.2491 -4.9198 36 1 9.0845 -0.7208 -4.9944 37 1 11.2519 -0.7809 -3.9057 38 1 11.5662 -1.6944 -6.8076 39 1 9.6925 -2.5043 -1.3658 40 1 8.8375 -3.7152 -2.3616 41 1 1.9724 -2.1222 -0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:17 Heat of formation + Delta-G solvation = -31.832251 kcal Electronic energy + Delta-G solvation = -23158.744930 eV Core-core repulsion = 19653.356797 eV Total energy + Delta-G solvation = -3505.388133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.13397 -41.13290 -39.12223 -36.15340 -35.50556 -34.22453 -32.64349 -31.97008 -31.04270 -30.02887 -27.72913 -26.75643 -25.14047 -23.81363 -21.85070 -21.50288 -21.09339 -20.17802 -19.19677 -18.49667 -17.29967 -17.21726 -16.92691 -16.89589 -16.06110 -15.79605 -15.58173 -15.24768 -14.79720 -14.59406 -14.18809 -13.93290 -13.89479 -13.79223 -13.54529 -13.29001 -13.27603 -13.13923 -13.01663 -12.68209 -12.67574 -12.49668 -12.38309 -12.29802 -12.00987 -11.41675 -11.30861 -11.04807 -10.64527 -10.40414 -10.17278 -9.70113 -9.21365 -8.25944 -6.40493 0.97740 1.41993 1.43858 1.46263 1.49218 1.51257 1.91584 2.04794 2.38722 2.99450 3.41389 3.51534 3.75858 3.85890 3.96164 4.01258 4.10382 4.24921 4.26415 4.38448 4.46944 4.54600 4.56366 4.62446 4.67066 4.76947 4.88089 4.98140 5.05255 5.13084 5.18817 5.30389 5.35695 5.43118 5.50636 5.74438 5.80651 6.05859 6.13332 6.50547 6.63213 6.79192 7.00295 7.29266 7.38304 8.79828 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002843 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.141052 B = 9846.516457 C = 9933.891045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.255 4.255 3 C 0.041 3.959 4 N -0.335 5.335 5 N -0.380 5.380 6 C 0.157 3.843 7 C -0.129 4.129 8 C 0.527 3.473 9 O -0.587 6.587 10 N -0.610 5.610 11 C 0.103 3.897 12 C -0.125 4.125 13 C 0.234 3.766 14 O -0.594 6.594 15 C -0.563 4.563 16 H 0.052 0.948 17 C 0.037 3.963 18 N -0.905 5.905 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.129 3.871 24 C 0.050 3.950 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.203 0.797 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.380 0.620 38 H 0.272 0.728 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.115 4.464 6.034 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.266 4.266 3 C -0.145 4.145 4 N -0.157 5.157 5 N -0.163 5.163 6 C 0.035 3.965 7 C -0.169 4.169 8 C 0.316 3.684 9 O -0.468 6.468 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.164 4.164 13 C 0.194 3.806 14 O -0.403 6.403 15 C -0.601 4.601 16 H 0.070 0.930 17 C -0.164 4.164 18 N -0.544 5.544 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.204 1.204 23 C 0.006 3.994 24 C -0.095 4.095 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.219 0.781 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.867 4.231 6.993 19.648 hybrid contribution 0.417 -0.819 -1.152 1.473 sum -17.450 3.412 5.842 18.715 Atomic orbital electron populations 1.20075 0.87373 1.02988 1.02107 1.20553 0.98505 0.91430 1.16133 1.24316 0.89623 1.01255 0.99265 1.77304 1.22758 0.89849 1.25740 1.48687 1.05986 1.04462 1.57125 1.21348 0.83216 0.93294 0.98635 1.21712 0.93075 1.00707 1.01444 1.20574 0.84111 0.84014 0.79668 1.90666 1.79508 1.38139 1.38521 1.48691 1.20547 1.36802 1.28161 1.22536 1.01466 0.91481 0.86377 1.23082 0.96645 1.00156 0.96527 1.19629 0.85571 0.86810 0.88598 1.86126 1.56397 1.59272 1.38459 1.21681 1.38269 0.94477 1.05707 0.92970 1.25586 0.95171 0.98356 0.97315 1.69743 1.43305 1.20758 1.20582 0.85603 0.78653 0.79539 0.77764 1.19785 1.20298 1.20362 1.21806 0.84474 0.94869 0.98281 1.22958 0.83426 1.01685 1.01481 0.91642 0.91244 0.91090 0.78070 0.89980 0.86325 0.86867 0.87513 0.88421 0.91115 0.92255 0.90210 0.77049 0.91872 0.93719 0.91889 0.78340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.37 71.24 0.74 0.01 16 2 C -0.25 -4.40 6.10 -20.14 -0.12 -4.53 16 3 C 0.04 0.82 11.96 85.24 1.02 1.84 16 4 N -0.34 -8.51 12.42 -57.02 -0.71 -9.22 16 5 N -0.38 -8.61 3.68 -348.05 -1.28 -9.89 16 6 C 0.16 3.56 5.80 86.38 0.50 4.06 16 7 C -0.13 -3.22 4.89 29.85 0.15 -3.07 16 8 C 0.53 18.05 7.85 87.66 0.69 18.74 16 9 O -0.59 -23.58 16.31 -3.05 -0.05 -23.63 16 10 N -0.61 -22.98 3.33 -811.76 -2.70 -25.68 16 11 C 0.10 3.48 6.68 86.85 0.58 4.06 16 12 C -0.13 -5.23 5.47 31.98 0.18 -5.06 16 13 C 0.23 11.21 0.84 -10.34 -0.01 11.21 16 14 O -0.59 -29.84 13.06 -148.98 -1.95 -31.78 16 15 C -0.56 -29.45 8.23 25.60 0.21 -29.24 16 16 H 0.05 2.77 7.58 -2.91 -0.02 2.74 16 17 C 0.04 1.89 5.28 84.65 0.45 2.34 16 18 N -0.91 -45.57 10.67 21.45 0.23 -45.34 16 19 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.13 5.79 6.23 86.74 0.54 6.33 16 24 C 0.05 0.89 11.36 83.54 0.95 1.84 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 30 H 0.12 2.33 8.03 -2.39 -0.02 2.31 16 31 H 0.11 2.47 7.85 -2.39 -0.02 2.45 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.69 16 33 H 0.10 2.60 7.48 -2.39 -0.02 2.58 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 36 H 0.08 3.47 7.53 -2.39 -0.02 3.45 16 37 H 0.38 19.04 7.46 -74.06 -0.55 18.49 16 38 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 39 H 0.04 2.12 8.07 -2.39 -0.02 2.11 16 40 H 0.06 2.91 7.67 -2.39 -0.02 2.89 16 41 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -63.12 344.32 1.92 -61.21 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.48 Total: 32.91 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.86 Total: 8.52 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.46 Total: -90.13 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.00 Total: -55.41 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -63.12 1.92 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.373 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds