Wall clock time and date at job start Tue Mar 31 2020 03:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46661 * 2 1 4 4 C 1.39677 * 126.06707 * 125.28391 * 3 2 1 5 5 C 1.38399 * 105.35812 * 180.08797 * 4 3 2 6 6 C 1.47170 * 126.88250 * 179.91105 * 5 4 3 7 7 O 1.21624 * 119.99687 * 185.67518 * 6 5 4 8 8 N 1.34777 * 119.99978 * 5.40742 * 6 5 4 9 9 C 1.47024 * 125.64530 * 355.21081 * 8 6 5 10 10 C 1.54323 * 107.26517 * 181.02355 * 9 8 6 11 11 C 1.55152 * 102.94402 * 22.19667 * 10 9 8 12 12 O 1.42906 * 111.00631 * 82.56981 * 11 10 9 13 13 C 1.50705 * 111.00550 * 206.38288 * 11 10 9 14 14 H 1.08003 * 120.00075 * 359.97438 * 13 11 10 15 15 C 1.37879 * 120.00138 * 180.02562 * 13 11 10 16 16 N 1.31509 * 119.99987 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99836 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47193 * 89.99997 * 17 15 13 19 19 H 1.48500 * 109.46611 * 209.99659 * 17 15 13 20 20 H 1.48494 * 109.47121 * 329.99623 * 17 15 13 21 21 C 1.47418 * 125.64761 * 174.90821 * 8 6 5 22 22 N 1.36595 * 106.23386 * 359.65806 * 5 4 3 23 23 C 1.46495 * 125.19431 * 180.24721 * 22 5 4 24 24 N 1.28442 * 109.61721 * 0.22203 * 22 5 4 25 25 H 1.08996 * 109.47599 * 299.99987 * 1 2 3 26 26 H 1.08996 * 109.47088 * 60.00164 * 1 2 3 27 27 H 1.09005 * 109.46619 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47599 * 240.00013 * 2 1 3 29 29 H 1.08996 * 109.47088 * 119.99836 * 2 1 3 30 30 H 1.08000 * 127.31853 * 0.02562 * 4 3 2 31 31 H 1.08992 * 109.88606 * 300.44417 * 9 8 6 32 32 H 1.08999 * 109.88358 * 61.45679 * 9 8 6 33 33 H 1.09005 * 110.71768 * 140.56091 * 10 9 8 34 34 H 1.08998 * 110.72341 * 263.83217 * 10 9 8 35 35 H 0.96703 * 113.99824 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00220 * 180.02562 * 16 15 13 37 37 H 1.09005 * 110.36699 * 274.74524 * 21 8 6 38 38 H 1.08997 * 110.36986 * 37.06518 * 21 8 6 39 39 H 1.09003 * 109.47310 * 94.37933 * 23 22 5 40 40 H 1.09000 * 109.47461 * 214.38072 * 23 22 5 41 41 H 1.09004 * 109.47159 * 334.38488 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9212 1.9789 0.9216 5 6 3.0845 3.2942 0.5233 6 6 3.9261 4.3145 1.1687 7 8 3.8984 5.4644 0.7735 8 7 4.7234 3.9758 2.2012 9 6 4.7768 2.6551 2.8451 10 6 5.8089 2.7447 3.9889 11 6 5.8656 4.2661 4.2876 12 8 4.7960 4.6591 5.1500 13 6 7.1988 4.6520 4.8750 14 1 7.9574 3.8997 5.0330 15 6 7.4496 5.9653 5.2117 16 7 6.5257 6.8813 5.0198 17 14 9.1023 6.4437 5.9391 18 1 10.0388 6.8052 4.8448 19 1 8.9263 7.6074 6.8446 20 1 9.6556 5.2989 6.7061 21 6 5.6907 4.8663 2.8679 22 7 2.3125 3.4540 -0.5922 23 6 2.1835 4.6957 -1.3588 24 7 1.7174 2.3494 -0.8667 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3822 1.4884 1.7662 31 1 3.7972 2.3996 3.2489 32 1 5.0871 1.9019 2.1209 33 1 5.4643 2.1926 4.8634 34 1 6.7819 2.3798 3.6599 35 1 4.7903 5.6019 5.3651 36 1 6.7023 7.8053 5.2563 37 1 6.6403 4.8635 2.3327 38 1 5.2930 5.8792 2.9311 39 1 2.8932 4.6873 -2.1862 40 1 1.1696 4.7771 -1.7507 41 1 2.3918 5.5466 -0.7102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602165972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:35 Heat of formation + Delta-G solvation = -4.544633 kcal Electronic energy + Delta-G solvation = -24134.660932 eV Core-core repulsion = 20630.456080 eV Total energy + Delta-G solvation = -3504.204853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42912 -39.27966 -37.23111 -34.86854 -34.34972 -32.20204 -31.85864 -30.94356 -29.97818 -27.85553 -26.88306 -25.37337 -23.65384 -23.31704 -21.58544 -20.63381 -19.64395 -18.51215 -17.29688 -16.77394 -16.23671 -16.12208 -15.32849 -14.92822 -14.75173 -14.43438 -14.22547 -13.99079 -13.78885 -13.22214 -13.12945 -12.88103 -12.82803 -12.41585 -12.23631 -12.00455 -11.62277 -11.51185 -11.49002 -11.31565 -11.08435 -10.83052 -10.66563 -10.53996 -10.39687 -10.23009 -9.62321 -9.43158 -8.95340 -8.77560 -8.73637 -8.45843 -7.88974 -6.34341 -4.44140 1.49521 2.51566 2.64938 3.17134 3.25312 3.27767 3.53940 3.56114 4.21754 4.50298 4.66805 4.90001 4.96059 5.10470 5.20263 5.27524 5.32375 5.37535 5.49654 5.59999 5.60900 5.71106 5.75241 5.81001 5.85551 5.97385 6.03691 6.13686 6.16805 6.43326 6.59949 6.65737 6.75805 6.85310 6.87238 7.16895 7.26900 7.69001 7.92672 8.02525 8.18082 8.52327 8.60052 9.25978 9.40976 10.72899 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.003975 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.628977 B = 7043.142195 C = 7694.540932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.020 3.980 4 C -0.199 4.199 5 C -0.021 4.021 6 C 0.593 3.407 7 O -0.554 6.554 8 N -0.589 5.589 9 C 0.097 3.903 10 C -0.120 4.120 11 C 0.250 3.750 12 O -0.583 6.583 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.094 3.906 22 N -0.262 5.262 23 C 0.083 3.917 24 N -0.282 5.282 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.170 0.830 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.272 0.728 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -9.956 -8.422 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.227 4.227 5 C -0.149 4.149 6 C 0.380 3.620 7 O -0.434 6.434 8 N -0.320 5.320 9 C -0.026 4.026 10 C -0.158 4.158 11 C 0.209 3.791 12 O -0.393 6.393 13 C -0.577 4.577 14 H 0.087 0.913 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.027 4.027 22 N -0.049 5.049 23 C -0.057 4.057 24 N -0.116 5.116 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.187 0.813 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.094 -9.394 -9.735 15.765 hybrid contribution 1.494 0.922 0.969 2.005 sum -6.600 -8.472 -8.766 13.863 Atomic orbital electron populations 1.21708 0.94788 1.01419 1.02432 1.19835 0.96015 0.88564 1.02873 1.21963 1.00447 0.96594 0.94687 1.22689 1.03775 0.92781 1.03495 1.21539 1.02652 0.96682 0.94069 1.16523 0.79401 0.86091 0.80006 1.90721 1.67787 1.19770 1.65139 1.48390 1.38334 1.14558 1.30695 1.22389 1.00353 0.84625 0.95194 1.22681 0.97697 0.99011 0.96380 1.19622 0.86518 0.88104 0.84853 1.86073 1.51874 1.32327 1.69049 1.21504 0.99245 0.94080 1.42842 0.91343 1.25089 0.97638 0.96230 0.94267 1.69560 1.33897 1.02517 1.47438 0.86373 0.83072 0.78238 0.79070 1.20395 1.20963 1.19621 1.23456 0.89389 0.95043 0.94808 1.45487 1.30594 1.09394 1.19387 1.22381 1.03719 0.82511 0.97093 1.73002 1.20080 0.92809 1.25660 0.92694 0.92287 0.92454 0.90703 0.90055 0.81292 0.91398 0.91860 0.90402 0.90275 0.76114 0.91810 0.91720 0.89626 0.90134 0.89306 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.88 37.16 0.37 -1.00 16 2 C -0.03 -0.34 6.51 -27.88 -0.18 -0.53 16 3 C 0.02 0.28 6.49 -82.47 -0.54 -0.26 16 4 C -0.20 -3.00 9.36 -38.99 -0.36 -3.36 16 5 C -0.02 -0.37 6.92 -82.06 -0.57 -0.93 16 6 C 0.59 12.02 7.82 -12.63 -0.10 11.92 16 7 O -0.55 -12.43 14.82 5.26 0.08 -12.36 16 8 N -0.59 -11.96 3.32 -171.75 -0.57 -12.53 16 9 C 0.10 1.65 5.01 -3.06 -0.02 1.64 16 10 C -0.12 -2.26 6.12 -24.90 -0.15 -2.41 16 11 C 0.25 5.85 0.89 -89.51 -0.08 5.77 16 12 O -0.58 -14.63 13.19 -35.23 -0.46 -15.09 16 13 C -0.54 -13.54 8.25 -34.44 -0.28 -13.82 16 14 H 0.07 1.68 7.76 -52.48 -0.41 1.27 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -23.30 10.72 55.43 0.59 -22.70 16 17 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 C 0.09 2.18 5.67 -2.42 -0.01 2.17 16 22 N -0.26 -4.20 3.75 -63.88 -0.24 -4.44 16 23 C 0.08 1.07 11.01 59.84 0.66 1.73 16 24 N -0.28 -4.35 11.87 33.64 0.40 -3.95 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 30 H 0.17 2.22 4.65 -52.49 -0.24 1.97 16 31 H 0.07 1.10 7.00 -51.93 -0.36 0.73 16 32 H 0.06 0.91 6.90 -51.93 -0.36 0.55 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 35 H 0.39 10.09 6.93 45.56 0.32 10.41 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 38 H 0.09 2.24 7.60 -51.93 -0.39 1.85 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.12 1.69 5.97 -51.93 -0.31 1.38 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -29.46 334.05 -6.66 -36.13 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.11 Total: 12.49 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.36 Total: 2.62 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.18 Total: -43.62 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.39 Total: -27.45 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.46 -6.66 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602165972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.584 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds