Wall clock time and date at job start Tue Mar 31 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.79893 * 2 1 4 4 C 1.35452 * 103.98139 * 180.16374 * 3 2 1 5 5 C 1.50706 * 126.77494 * 179.90981 * 4 3 2 6 6 C 1.50702 * 109.46792 * 89.71468 * 5 4 3 7 7 O 1.21278 * 120.00423 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.47081 * 120.88114 * 0.02562 * 8 6 5 10 10 C 1.53235 * 108.52054 * 231.16282 * 9 8 6 11 11 N 1.46906 * 109.34079 * 306.16959 * 10 9 8 12 12 C 1.46898 * 110.99801 * 187.25100 * 11 10 9 13 13 C 1.50700 * 109.46835 * 170.00134 * 12 11 10 14 14 H 1.08001 * 120.00412 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00313 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99363 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47041 * 60.00288 * 17 15 13 19 19 H 1.48505 * 109.46914 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47211 * 300.00067 * 17 15 13 21 21 C 1.46896 * 111.26658 * 63.10656 * 11 10 9 22 22 C 1.47082 * 120.88386 * 179.97438 * 8 6 5 23 23 O 1.34045 * 106.44824 * 359.65280 * 4 3 2 24 24 N 1.20926 * 111.56321 * 0.23591 * 23 4 3 25 25 H 1.09000 * 109.47399 * 270.25095 * 1 2 3 26 26 H 1.08998 * 109.47144 * 30.25405 * 1 2 3 27 27 H 1.09002 * 109.46901 * 150.25270 * 1 2 3 28 28 H 1.07995 * 128.00878 * 0.07754 * 3 2 1 29 29 H 1.09000 * 109.46807 * 329.71574 * 5 4 3 30 30 H 1.09000 * 109.46946 * 209.71320 * 5 4 3 31 31 H 1.09002 * 109.63012 * 111.45725 * 9 8 6 32 32 H 1.09000 * 109.63054 * 350.86988 * 9 8 6 33 33 H 1.08997 * 109.49554 * 186.21402 * 10 9 8 34 34 H 1.08997 * 109.49382 * 66.13002 * 10 9 8 35 35 H 1.08993 * 109.47768 * 290.00114 * 12 11 10 36 36 H 1.09004 * 109.47075 * 50.00431 * 12 11 10 37 37 H 0.97003 * 119.99498 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.49756 * 56.85119 * 21 11 10 39 39 H 1.08998 * 109.49494 * 176.90931 * 21 11 10 40 40 H 1.09001 * 109.62379 * 9.12792 * 22 8 6 41 41 H 1.08998 * 109.62760 * 248.54863 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0038 5 6 4.9022 1.3696 -0.0073 6 6 5.3359 1.6296 1.4123 7 8 4.6563 1.2348 2.3360 8 7 6.4785 2.3017 1.6555 9 6 7.3165 2.7906 0.5501 10 6 8.7568 2.3250 0.7884 11 7 9.1887 2.7452 2.1282 12 6 10.6173 2.4699 2.3313 13 6 11.0796 3.1288 3.6053 14 1 10.3821 3.6958 4.2040 15 6 12.3934 3.0088 4.0061 16 7 13.2431 2.3197 3.2763 17 14 12.9666 3.8262 5.5850 18 1 12.1912 3.2873 6.7311 19 1 14.4108 3.5478 5.7904 20 1 12.7534 5.2927 5.4889 21 6 8.3762 2.1093 3.1738 22 6 6.9200 2.5667 3.0332 23 8 3.4538 -0.7253 0.0021 24 7 2.2868 -1.0423 0.0041 25 1 -0.3634 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 2.0709 2.1743 0.0012 29 1 4.7648 2.3190 -0.5249 30 1 5.6658 0.7839 -0.5191 31 1 7.2842 3.8798 0.5200 32 1 6.9518 2.3844 -0.3934 33 1 9.4116 2.7698 0.0391 34 1 8.8047 1.2385 0.7150 35 1 10.7735 1.3935 2.4015 36 1 11.1867 2.8656 1.4902 37 1 14.1675 2.2356 3.5581 38 1 8.4292 1.0258 3.0671 39 1 8.7551 2.3972 4.1544 40 1 6.2929 2.0124 3.7316 41 1 6.8494 3.6343 3.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:46 Heat of formation + Delta-G solvation = 35.046964 kcal Electronic energy + Delta-G solvation = -23215.558300 eV Core-core repulsion = 19713.070267 eV Total energy + Delta-G solvation = -3502.488032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.03013 -40.10768 -37.65258 -34.93778 -34.52465 -33.64808 -32.43786 -30.98214 -29.12524 -28.88220 -27.78268 -25.50531 -23.44730 -23.15924 -22.25433 -21.11644 -20.09953 -18.80986 -17.88558 -17.35875 -16.94205 -16.41415 -15.83058 -15.56403 -14.88630 -14.67765 -14.49710 -14.17154 -13.76207 -13.71241 -13.60773 -13.45813 -13.24857 -13.17259 -12.63637 -12.43342 -12.21398 -12.00375 -11.32651 -11.27384 -11.20961 -10.89252 -10.81181 -10.66423 -10.58624 -10.14950 -10.03455 -9.91274 -9.45751 -9.31713 -8.59851 -8.48367 -7.39858 -6.09307 -4.11398 1.28454 2.06909 2.52602 2.77868 3.14456 3.30009 3.34455 3.36929 4.02481 4.15462 4.35921 4.38523 4.68540 4.77640 4.79490 4.96956 5.09829 5.17122 5.20940 5.24366 5.29307 5.30858 5.41337 5.52351 5.55976 5.59462 5.73320 5.87541 5.92818 5.93478 6.12761 6.31750 6.47173 6.64068 7.16297 7.22627 7.39776 7.69979 7.95498 8.06449 8.09617 8.13419 8.42740 8.95389 9.53335 11.01439 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.043391 B = 0.002736 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.134126 B =10230.689548 C =10425.485072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.220 4.220 4 C -0.004 4.004 5 C -0.063 4.063 6 C 0.515 3.485 7 O -0.539 6.539 8 N -0.605 5.605 9 C 0.109 3.891 10 C 0.038 3.962 11 N -0.536 5.536 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.051 3.949 22 C 0.116 3.884 23 O 0.104 5.896 24 N -0.365 5.365 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.170 0.830 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.028 0.972 35 H -0.008 1.008 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.025 0.975 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.631 0.173 -10.041 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.145 4.145 3 C -0.242 4.242 4 C -0.068 4.068 5 C -0.103 4.103 6 C 0.302 3.698 7 O -0.416 6.416 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.092 4.092 11 N -0.261 5.261 12 C 0.070 3.930 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.079 4.079 22 C -0.006 4.006 23 O 0.037 5.963 24 N -0.070 5.070 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.188 0.812 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.077 -0.917 -9.509 22.234 hybrid contribution 0.699 0.426 0.720 1.090 sum -19.378 -0.490 -8.789 21.284 Atomic orbital electron populations 1.20150 0.85996 1.03596 1.03414 1.23556 0.99002 0.88853 1.03062 1.22323 0.91030 1.01070 1.09753 1.23606 0.97090 0.83917 1.02168 1.20190 0.92283 1.00867 0.97007 1.20159 0.81034 0.78210 0.90411 1.90734 1.53684 1.51348 1.45867 1.48204 1.21929 1.55010 1.08670 1.21998 0.90819 1.00195 0.88378 1.22405 0.94467 0.97953 0.94327 1.62099 1.06794 1.57731 0.99484 1.19720 0.80585 0.94915 0.97825 1.21093 0.94755 1.32296 1.06849 0.91848 1.24992 0.96700 0.95451 0.97399 1.69943 1.04400 1.40859 1.38485 0.86546 0.77495 0.79934 0.83356 1.20232 1.21352 1.20117 1.22357 0.91141 0.95986 0.98369 1.21900 0.95624 1.01450 0.81658 1.84808 1.21629 1.22528 1.67288 1.73824 0.89259 1.24143 1.19749 0.90179 0.90059 0.90644 0.81245 0.85462 0.86243 0.90196 0.90105 0.89852 0.95343 0.99066 0.94996 0.92783 0.95640 0.88391 0.89354 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.47 36.01 0.38 -0.18 16 2 C 0.01 0.16 7.33 -82.10 -0.60 -0.44 16 3 C -0.22 -2.32 11.06 -39.38 -0.44 -2.76 16 4 C 0.00 -0.04 5.98 -35.30 -0.21 -0.25 16 5 C -0.06 -0.57 4.63 -29.03 -0.13 -0.70 16 6 C 0.52 6.92 7.70 -10.99 -0.08 6.84 16 7 O -0.54 -9.45 15.49 5.56 0.09 -9.37 16 8 N -0.60 -8.15 3.01 -172.43 -0.52 -8.67 16 9 C 0.11 1.24 6.50 -3.60 -0.02 1.21 16 10 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 11 N -0.54 -10.55 4.62 -235.74 -1.09 -11.64 16 12 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 13 C -0.51 -13.74 8.41 -34.44 -0.29 -14.02 16 14 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.05 0.93 5.46 -3.68 -0.02 0.91 16 22 C 0.12 1.78 6.60 -3.58 -0.02 1.76 16 23 O 0.10 1.44 11.20 17.16 0.19 1.63 16 24 N -0.37 -5.12 12.07 33.42 0.40 -4.71 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 0.72 8.00 -51.93 -0.42 0.30 16 30 H 0.12 0.86 7.66 -51.93 -0.40 0.46 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.61 6.02 -51.93 -0.31 0.29 16 33 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 36 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 40 H 0.09 1.40 7.06 -51.93 -0.37 1.03 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -33.51 340.45 -7.65 -41.16 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.98 Total: -3.47 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.59 Total: -0.88 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.47 Total: -50.26 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.28 Total: -7.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.51 -7.65 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.205 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds