Wall clock time and date at job start Tue Mar 31 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.79893 * 2 1 4 4 C 1.35452 * 103.98139 * 180.16374 * 3 2 1 5 5 C 1.50706 * 126.77494 * 179.90981 * 4 3 2 6 6 C 1.50702 * 109.46792 * 89.71468 * 5 4 3 7 7 O 1.21278 * 120.00423 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.47081 * 120.88114 * 0.02562 * 8 6 5 10 10 C 1.53235 * 108.52054 * 231.16282 * 9 8 6 11 11 N 1.46906 * 109.34079 * 306.16959 * 10 9 8 12 12 C 1.46898 * 110.99801 * 187.25100 * 11 10 9 13 13 C 1.50700 * 109.46835 * 170.00134 * 12 11 10 14 14 H 1.08001 * 120.00412 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00313 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99363 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47041 * 60.00288 * 17 15 13 19 19 H 1.48505 * 109.46914 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47211 * 300.00067 * 17 15 13 21 21 C 1.46896 * 111.26658 * 63.10656 * 11 10 9 22 22 C 1.47082 * 120.88386 * 179.97438 * 8 6 5 23 23 O 1.34045 * 106.44824 * 359.65280 * 4 3 2 24 24 N 1.20926 * 111.56321 * 0.23591 * 23 4 3 25 25 H 1.09000 * 109.47399 * 270.25095 * 1 2 3 26 26 H 1.08998 * 109.47144 * 30.25405 * 1 2 3 27 27 H 1.09002 * 109.46901 * 150.25270 * 1 2 3 28 28 H 1.07995 * 128.00878 * 0.07754 * 3 2 1 29 29 H 1.09000 * 109.46807 * 329.71574 * 5 4 3 30 30 H 1.09000 * 109.46946 * 209.71320 * 5 4 3 31 31 H 1.09002 * 109.63012 * 111.45725 * 9 8 6 32 32 H 1.09000 * 109.63054 * 350.86988 * 9 8 6 33 33 H 1.08997 * 109.49554 * 186.21402 * 10 9 8 34 34 H 1.08997 * 109.49382 * 66.13002 * 10 9 8 35 35 H 1.08993 * 109.47768 * 290.00114 * 12 11 10 36 36 H 1.09004 * 109.47075 * 50.00431 * 12 11 10 37 37 H 0.97003 * 119.99498 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.49756 * 56.85119 * 21 11 10 39 39 H 1.08998 * 109.49494 * 176.90931 * 21 11 10 40 40 H 1.09001 * 109.62379 * 9.12792 * 22 8 6 41 41 H 1.08998 * 109.62760 * 248.54863 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0038 5 6 4.9022 1.3696 -0.0073 6 6 5.3359 1.6296 1.4123 7 8 4.6563 1.2348 2.3360 8 7 6.4785 2.3017 1.6555 9 6 7.3165 2.7906 0.5501 10 6 8.7568 2.3250 0.7884 11 7 9.1887 2.7452 2.1282 12 6 10.6173 2.4699 2.3313 13 6 11.0796 3.1288 3.6053 14 1 10.3821 3.6958 4.2040 15 6 12.3934 3.0088 4.0061 16 7 13.2431 2.3197 3.2763 17 14 12.9666 3.8262 5.5850 18 1 12.1912 3.2873 6.7311 19 1 14.4108 3.5478 5.7904 20 1 12.7534 5.2927 5.4889 21 6 8.3762 2.1093 3.1738 22 6 6.9200 2.5667 3.0332 23 8 3.4538 -0.7253 0.0021 24 7 2.2868 -1.0423 0.0041 25 1 -0.3634 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 2.0709 2.1743 0.0012 29 1 4.7648 2.3190 -0.5249 30 1 5.6658 0.7839 -0.5191 31 1 7.2842 3.8798 0.5200 32 1 6.9518 2.3844 -0.3934 33 1 9.4116 2.7698 0.0391 34 1 8.8047 1.2385 0.7150 35 1 10.7735 1.3935 2.4015 36 1 11.1867 2.8656 1.4902 37 1 14.1675 2.2356 3.5581 38 1 8.4292 1.0258 3.0671 39 1 8.7551 2.3972 4.1544 40 1 6.2929 2.0124 3.7316 41 1 6.8494 3.6343 3.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:43 Heat of formation + Delta-G solvation = 11.535321 kcal Electronic energy + Delta-G solvation = -23216.577841 eV Core-core repulsion = 19713.070267 eV Total energy + Delta-G solvation = -3503.507573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -45.88974 -41.23283 -39.01381 -36.00083 -35.73225 -34.59633 -34.28528 -32.19637 -30.40984 -29.57425 -29.10037 -27.11516 -24.67491 -24.07716 -23.89138 -22.40345 -21.10296 -19.90084 -18.83812 -18.51213 -18.20130 -17.98386 -16.91766 -16.67157 -16.56371 -15.96666 -15.67898 -15.36052 -15.30814 -14.80268 -14.65285 -14.26116 -14.18188 -14.02364 -13.91211 -13.58778 -13.33750 -13.11733 -13.03147 -12.76483 -12.54947 -12.33311 -12.29057 -12.17419 -12.02211 -11.71663 -11.35184 -11.06303 -10.94046 -10.60936 -10.33207 -9.78301 -9.04459 -8.20566 -6.30222 0.43086 1.26564 1.42633 1.44811 1.52295 1.52741 1.88854 2.23987 2.40715 3.11989 3.24927 3.31115 3.39702 3.50157 3.99717 4.04701 4.07395 4.14349 4.27246 4.30647 4.35001 4.47630 4.51409 4.60616 4.64337 4.68697 4.77213 4.87875 4.91318 4.94892 4.95916 5.06800 5.18319 5.25895 5.26880 5.44642 5.64167 6.04159 6.20572 6.40343 6.61070 6.85342 7.05738 7.28568 7.39549 8.90164 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.043391 B = 0.002736 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.134126 B =10230.689548 C =10425.485072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.220 4.220 4 C -0.017 4.017 5 C -0.054 4.054 6 C 0.515 3.485 7 O -0.586 6.586 8 N -0.607 5.607 9 C 0.117 3.883 10 C 0.031 3.969 11 N -0.539 5.539 12 C 0.209 3.791 13 C -0.524 4.524 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.056 3.944 22 C 0.127 3.873 23 O 0.075 5.925 24 N -0.403 5.403 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.200 0.800 29 H 0.175 0.825 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.020 0.980 35 H -0.043 1.043 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.007 0.993 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 2.094 -11.160 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C -0.241 4.241 4 C -0.080 4.080 5 C -0.094 4.094 6 C 0.304 3.696 7 O -0.467 6.467 8 N -0.339 5.339 9 C -0.005 4.005 10 C -0.098 4.098 11 N -0.263 5.263 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.073 4.073 22 C 0.004 3.996 23 O 0.013 5.987 24 N -0.112 5.112 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.217 0.783 29 H 0.192 0.808 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.038 0.962 35 H -0.026 1.026 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.724 1.020 -10.659 24.220 hybrid contribution 1.170 -0.197 1.042 1.579 sum -20.554 0.824 -9.618 22.708 Atomic orbital electron populations 1.20323 0.83633 1.05065 1.04159 1.24283 1.00698 0.88754 1.01437 1.22783 0.90462 1.02185 1.08658 1.24144 0.98577 0.83314 1.02004 1.20376 0.91782 1.03120 0.94091 1.20889 0.80169 0.76704 0.91859 1.90722 1.55098 1.52985 1.47858 1.48272 1.22395 1.55073 1.08190 1.22169 0.87464 1.01310 0.89533 1.22617 0.97655 0.97715 0.91837 1.62017 1.04192 1.58074 1.02058 1.19362 0.83745 0.92261 0.96380 1.21449 0.95039 1.32099 1.07663 0.91701 1.25890 0.96923 0.96031 1.00783 1.70071 1.04723 1.42288 1.40356 0.85473 0.76920 0.79237 0.79222 1.19536 1.21093 1.19051 1.22261 0.93084 0.94795 0.97148 1.21602 0.92874 1.01691 0.83398 1.84752 1.21791 1.23985 1.68220 1.73821 0.89751 1.25761 1.21868 0.89666 0.87338 0.90455 0.78324 0.80803 0.83834 0.88649 0.84970 0.88985 0.96173 1.02560 0.96906 0.92726 0.97461 0.90551 0.90061 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.47 71.24 0.75 -0.23 16 2 C 0.01 0.14 7.33 43.58 0.32 0.46 16 3 C -0.22 -4.06 11.06 22.40 0.25 -3.81 16 4 C -0.02 -0.34 5.98 25.04 0.15 -0.19 16 5 C -0.05 -0.76 4.63 29.10 0.13 -0.63 16 6 C 0.51 12.55 7.70 87.66 0.68 13.22 16 7 O -0.59 -20.05 15.49 -3.02 -0.05 -20.10 16 8 N -0.61 -14.85 3.01 -817.85 -2.46 -17.31 16 9 C 0.12 2.20 6.50 86.35 0.56 2.76 16 10 C 0.03 0.89 5.62 86.38 0.49 1.38 16 11 N -0.54 -21.29 4.62 -899.75 -4.16 -25.45 16 12 C 0.21 10.63 4.72 85.56 0.40 11.03 16 13 C -0.52 -28.73 8.41 25.60 0.22 -28.52 16 14 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 17 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 C 0.06 2.12 5.46 86.40 0.47 2.59 16 22 C 0.13 3.83 6.60 86.36 0.57 4.40 16 23 O 0.08 2.05 11.20 71.58 0.80 2.85 16 24 N -0.40 -11.22 12.07 -49.56 -0.60 -11.82 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.17 0.85 8.00 -2.39 -0.02 0.83 16 30 H 0.14 1.40 7.66 -2.39 -0.02 1.38 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.13 1.19 6.02 -2.39 -0.01 1.17 16 33 H 0.09 2.53 7.99 -2.39 -0.02 2.51 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 35 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 36 H 0.01 0.69 7.97 -2.39 -0.02 0.68 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 3.16 6.67 -2.39 -0.02 3.14 16 40 H 0.08 2.58 7.06 -2.39 -0.02 2.56 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -77.27 340.45 2.32 -74.95 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.03 Total: 3.34 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.44 Total: 3.03 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -6.93 Total: -109.55 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.75 Total: -17.25 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -77.27 2.32 -74.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -77.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds