Wall clock time and date at job start Tue Mar 31 2020 03:47:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50693 * 109.47501 * 2 1
4 4 N 1.29941 * 125.38217 * 89.98989 * 3 2 1
5 5 C 1.36059 * 108.48078 * 179.97438 * 4 3 2
6 6 C 1.47417 * 126.45186 * 180.02562 * 5 4 3
7 7 O 1.21613 * 120.00564 * 187.09789 * 6 5 4
8 8 N 1.34780 * 119.99769 * 7.09587 * 6 5 4
9 9 C 1.47082 * 120.88196 * 186.16442 * 8 6 5
10 10 C 1.53245 * 108.51848 * 128.83966 * 9 8 6
11 11 N 1.46898 * 109.33632 * 53.83125 * 10 9 8
12 12 C 1.46906 * 110.99301 * 172.74732 * 11 10 9
13 13 C 1.50697 * 109.47486 * 64.98680 * 12 11 10
14 14 H 1.08006 * 119.99737 * 355.02607 * 13 12 11
15 15 C 1.37869 * 120.00266 * 175.02259 * 13 12 11
16 16 N 1.31510 * 120.00178 * 179.97438 * 15 13 12
17 17 Si 1.86800 * 120.00037 * 0.02562 * 15 13 12
18 18 H 1.48505 * 109.47234 * 89.99326 * 17 15 13
19 19 H 1.48498 * 109.47354 * 209.99474 * 17 15 13
20 20 H 1.48497 * 109.47075 * 329.99733 * 17 15 13
21 21 C 1.46899 * 111.27073 * 296.89191 * 11 10 9
22 22 C 1.47080 * 120.87998 * 6.19480 * 8 6 5
23 23 C 1.36098 * 107.10079 * 0.26715 * 5 4 3
24 24 O 1.34058 * 125.37718 * 269.96004 * 3 2 1
25 25 H 1.09003 * 109.47280 * 179.97438 * 1 2 3
26 26 H 1.08995 * 109.47481 * 300.00802 * 1 2 3
27 27 H 1.09005 * 109.46577 * 60.00490 * 1 2 3
28 28 H 1.08995 * 109.47167 * 239.99645 * 2 1 3
29 29 H 1.09005 * 109.46577 * 119.99510 * 2 1 3
30 30 H 1.08996 * 109.62460 * 9.13138 * 9 8 6
31 31 H 1.09000 * 109.63025 * 248.54976 * 9 8 6
32 32 H 1.08994 * 109.49011 * 173.79594 * 10 9 8
33 33 H 1.09007 * 109.49129 * 293.87263 * 10 9 8
34 34 H 1.09006 * 109.46801 * 184.98061 * 12 11 10
35 35 H 1.08994 * 109.47409 * 304.98087 * 12 11 10
36 36 H 0.97006 * 120.00076 * 180.02562 * 16 15 13
37 37 H 1.08996 * 109.48970 * 183.07079 * 21 11 10
38 38 H 1.08998 * 109.49809 * 303.14677 * 21 11 10
39 39 H 1.08998 * 109.63198 * 111.45255 * 22 8 6
40 40 H 1.08996 * 109.62699 * 350.86883 * 22 8 6
41 41 H 1.08000 * 126.51945 * 179.73856 * 23 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 7 2.2831 2.1301 1.0594
5 6 2.7177 3.3572 0.6639
6 6 3.1126 4.4722 1.5438
7 8 3.3611 5.5635 1.0683
8 7 3.1982 4.2819 2.8753
9 6 3.4581 5.4091 3.7838
10 6 2.4018 5.3931 4.8939
11 7 2.3879 4.0706 5.5331
12 6 1.5124 4.0654 6.7127
13 6 0.0868 4.2949 6.2814
14 1 -0.1362 4.5109 5.2470
15 6 -0.9326 4.2292 7.2072
16 7 -2.1766 4.4300 6.8309
17 14 -0.5468 3.8562 8.9965
18 1 -0.3015 5.1267 9.7252
19 1 -1.6959 3.1458 9.6130
20 1 0.6638 2.9997 9.0737
21 6 1.9951 3.0228 4.5813
22 6 3.0347 2.9416 3.4584
23 6 2.7141 3.3635 -0.6971
24 8 2.2919 2.1522 -1.0931
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5139 0.8898
27 1 -0.3633 0.5138 -0.8901
28 1 1.8933 -0.5139 -0.8899
29 1 1.8932 -0.5138 0.8901
30 1 3.3947 6.3466 3.2314
31 1 4.4510 5.3052 4.2215
32 1 2.6432 6.1536 5.6365
33 1 1.4211 5.6006 4.4657
34 1 1.5886 3.1022 7.2174
35 1 1.8177 4.8584 7.3953
36 1 -2.8939 4.3841 7.4824
37 1 1.9415 2.0643 5.0974
38 1 1.0201 3.2632 4.1576
39 1 3.9868 2.6005 3.8649
40 1 2.6914 2.2479 2.6911
41 1 2.9995 4.1856 -1.3368
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602204785.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:58
Heat of formation + Delta-G solvation = 9.099086 kcal
Electronic energy + Delta-G solvation = -24032.713486 eV
Core-core repulsion = 20529.100270 eV
Total energy + Delta-G solvation = -3503.613217 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-43.60606 -39.72047 -37.49593 -35.33907 -34.38890 -34.06559 -32.24570 -30.64653
-29.66318 -28.56049 -25.80225 -24.61402 -24.11202 -22.97224 -21.87991 -21.40983
-20.21296 -18.98340 -17.56016 -16.98467 -16.75637 -16.66251 -15.83397 -14.97648
-14.88626 -14.73676 -14.51023 -14.37795 -14.05800 -13.74015 -13.40106 -13.33159
-12.95916 -12.54799 -12.43549 -12.19305 -12.04072 -11.50249 -11.40203 -11.38804
-11.30543 -11.05621 -10.65232 -10.53734 -10.29099 -10.16718 -9.94760 -9.61837
-9.39547 -9.16397 -8.61086 -8.35846 -7.22906 -6.11468 -4.11812 1.01791
1.87928 2.40056 3.10959 3.26724 3.34140 3.35270 3.37539 3.69651
4.38187 4.55283 4.58616 4.84017 4.86886 4.93523 5.04005 5.21668
5.39092 5.43118 5.46192 5.52395 5.60906 5.66292 5.71187 5.78839
5.88407 5.94596 6.00238 6.11047 6.38555 6.61965 6.67866 6.81680
6.83303 6.98506 7.04948 7.32969 7.52795 7.65519 8.01843 8.05731
8.25903 8.43177 8.90876 9.50886 11.01497
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.016380 B = 0.004535 C = 0.003863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.948755 B = 6172.643014 C = 7246.334727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.028 4.028
3 C 0.199 3.801
4 N -0.451 5.451
5 C -0.059 4.059
6 C 0.597 3.403
7 O -0.550 6.550
8 N -0.584 5.584
9 C 0.116 3.884
10 C 0.048 3.952
11 N -0.536 5.536
12 C 0.153 3.847
13 C -0.551 4.551
14 H 0.073 0.927
15 C 0.072 3.928
16 N -0.899 5.899
17 Si 0.879 3.121
18 H -0.276 1.276
19 H -0.287 1.287
20 H -0.263 1.263
21 C 0.055 3.945
22 C 0.069 3.931
23 C 0.006 3.994
24 O -0.196 6.196
25 H 0.074 0.926
26 H 0.069 0.931
27 H 0.059 0.941
28 H 0.094 0.906
29 H 0.110 0.890
30 H 0.087 0.913
31 H 0.070 0.930
32 H 0.078 0.922
33 H 0.046 0.954
34 H 0.032 0.968
35 H 0.024 0.976
36 H 0.263 0.737
37 H 0.075 0.925
38 H 0.048 0.952
39 H 0.060 0.940
40 H 0.145 0.855
41 H 0.230 0.770
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.813 -8.553 -14.449 19.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.066 4.066
3 C -0.009 4.009
4 N -0.181 5.181
5 C -0.179 4.179
6 C 0.384 3.616
7 O -0.429 6.429
8 N -0.315 5.315
9 C -0.007 4.007
10 C -0.081 4.081
11 N -0.260 5.260
12 C 0.026 3.974
13 C -0.589 4.589
14 H 0.091 0.909
15 C -0.130 4.130
16 N -0.537 5.537
17 Si 0.706 3.294
18 H -0.202 1.202
19 H -0.213 1.213
20 H -0.187 1.187
21 C -0.074 4.074
22 C -0.054 4.054
23 C -0.067 4.067
24 O -0.082 6.082
25 H 0.093 0.907
26 H 0.088 0.912
27 H 0.078 0.922
28 H 0.112 0.888
29 H 0.128 0.872
30 H 0.106 0.894
31 H 0.088 0.912
32 H 0.097 0.903
33 H 0.065 0.935
34 H 0.050 0.950
35 H 0.042 0.958
36 H 0.073 0.927
37 H 0.094 0.906
38 H 0.066 0.934
39 H 0.078 0.922
40 H 0.161 0.839
41 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 10.163 -8.300 -13.846 19.076
hybrid contribution -0.817 0.424 0.258 0.956
sum 9.346 -7.876 -13.588 18.276
Atomic orbital electron populations
1.21814 0.92697 1.03237 1.03415 1.20159 0.97192 0.83795 1.05419
1.26621 0.98741 0.97019 0.78486 1.70435 1.16438 1.02959 1.28264
1.21839 1.08897 0.94131 0.92998 1.16812 0.77564 0.85485 0.81749
1.90781 1.52141 1.24928 1.75042 1.47965 1.68110 1.10611 1.04813
1.21886 0.99199 0.89216 0.90353 1.22271 0.97511 0.92891 0.95424
1.62443 1.52405 1.03131 1.07974 1.20219 0.91061 0.97110 0.89015
1.21684 0.90560 1.49400 0.97293 0.90903 1.24973 0.94862 0.94300
0.98903 1.69935 0.99377 1.49615 1.34789 0.86793 0.78271 0.79052
0.85255 1.20208 1.21321 1.18745 1.22183 0.96560 0.96092 0.92547
1.23132 0.99716 0.83796 0.98730 1.25215 0.99415 0.86536 0.95579
1.84378 1.63599 1.22430 1.37836 0.90706 0.91163 0.92178 0.88782
0.87194 0.89432 0.91151 0.90345 0.93536 0.94984 0.95757 0.92696
0.90633 0.93405 0.92166 0.83853 0.75371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16
2 C -0.03 -0.20 6.56 -27.89 -0.18 -0.38 16
3 C 0.20 2.21 7.56 -13.08 -0.10 2.12 16
4 N -0.45 -6.31 7.76 -7.65 -0.06 -6.37 16
5 C -0.06 -0.88 6.72 -83.02 -0.56 -1.44 16
6 C 0.60 10.40 7.69 -12.52 -0.10 10.31 16
7 O -0.55 -10.48 16.38 5.27 0.09 -10.39 16
8 N -0.58 -10.24 3.01 -173.73 -0.52 -10.76 16
9 C 0.12 1.99 6.58 -3.60 -0.02 1.96 16
10 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16
11 N -0.54 -11.23 4.83 -235.76 -1.14 -12.37 16
12 C 0.15 3.65 4.21 -4.97 -0.02 3.63 16
13 C -0.55 -15.35 8.30 -34.44 -0.29 -15.64 16
14 H 0.07 2.25 6.13 -52.48 -0.32 1.93 16
15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
16 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16
17 Si 0.88 21.30 27.57 -169.99 -4.69 16.61 16
18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
20 H -0.26 -6.10 6.40 56.52 0.36 -5.74 16
21 C 0.06 1.09 5.15 -3.70 -0.02 1.07 16
22 C 0.07 1.15 6.51 -3.60 -0.02 1.13 16
23 C 0.01 0.07 11.95 29.96 0.36 0.43 16
24 O -0.20 -2.15 10.73 6.50 0.07 -2.08 16
25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.09 1.48 7.11 -51.93 -0.37 1.12 16
31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
32 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16
33 H 0.05 1.06 6.92 -51.92 -0.36 0.70 16
34 H 0.03 0.78 6.85 -51.93 -0.36 0.42 16
35 H 0.02 0.58 7.74 -51.93 -0.40 0.18 16
36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
37 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16
38 H 0.05 1.10 6.79 -51.93 -0.35 0.75 16
39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.15 2.28 3.73 -73.88 -0.28 2.01 16
41 H 0.23 1.96 8.06 -52.49 -0.42 1.53 16
LS Contribution 331.47 15.07 5.00 5.00
Total: -1.00 -33.51 331.47 -7.01 -40.52
By element:
Atomic # 1 Polarization: 7.02 SS G_CDS: -5.83 Total: 1.19 kcal
Atomic # 6 Polarization: 6.03 SS G_CDS: -0.70 Total: 5.33 kcal
Atomic # 7 Polarization: -55.22 SS G_CDS: -0.95 Total: -56.16 kcal
Atomic # 8 Polarization: -12.63 SS G_CDS: 0.16 Total: -12.48 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.69 Total: 16.61 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -33.51 -7.01 -40.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602204785.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.620 kcal
(2) G-P(sol) polarization free energy of solvation -33.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds