Wall clock time and date at job start Tue Mar 31 2020 03:47:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50693 * 109.47501 * 2 1
4 4 N 1.29941 * 125.38217 * 89.98989 * 3 2 1
5 5 C 1.36059 * 108.48078 * 179.97438 * 4 3 2
6 6 C 1.47417 * 126.45186 * 180.02562 * 5 4 3
7 7 O 1.21613 * 120.00564 * 187.09789 * 6 5 4
8 8 N 1.34780 * 119.99769 * 7.09587 * 6 5 4
9 9 C 1.47082 * 120.88196 * 186.16442 * 8 6 5
10 10 C 1.53245 * 108.51848 * 128.83966 * 9 8 6
11 11 N 1.46898 * 109.33632 * 53.83125 * 10 9 8
12 12 C 1.46906 * 110.99301 * 172.74732 * 11 10 9
13 13 C 1.50697 * 109.47486 * 64.98680 * 12 11 10
14 14 H 1.08006 * 119.99737 * 355.02607 * 13 12 11
15 15 C 1.37869 * 120.00266 * 175.02259 * 13 12 11
16 16 N 1.31510 * 120.00178 * 179.97438 * 15 13 12
17 17 Si 1.86800 * 120.00037 * 0.02562 * 15 13 12
18 18 H 1.48505 * 109.47234 * 89.99326 * 17 15 13
19 19 H 1.48498 * 109.47354 * 209.99474 * 17 15 13
20 20 H 1.48497 * 109.47075 * 329.99733 * 17 15 13
21 21 C 1.46899 * 111.27073 * 296.89191 * 11 10 9
22 22 C 1.47080 * 120.87998 * 6.19480 * 8 6 5
23 23 C 1.36098 * 107.10079 * 0.26715 * 5 4 3
24 24 O 1.34058 * 125.37718 * 269.96004 * 3 2 1
25 25 H 1.09003 * 109.47280 * 179.97438 * 1 2 3
26 26 H 1.08995 * 109.47481 * 300.00802 * 1 2 3
27 27 H 1.09005 * 109.46577 * 60.00490 * 1 2 3
28 28 H 1.08995 * 109.47167 * 239.99645 * 2 1 3
29 29 H 1.09005 * 109.46577 * 119.99510 * 2 1 3
30 30 H 1.08996 * 109.62460 * 9.13138 * 9 8 6
31 31 H 1.09000 * 109.63025 * 248.54976 * 9 8 6
32 32 H 1.08994 * 109.49011 * 173.79594 * 10 9 8
33 33 H 1.09007 * 109.49129 * 293.87263 * 10 9 8
34 34 H 1.09006 * 109.46801 * 184.98061 * 12 11 10
35 35 H 1.08994 * 109.47409 * 304.98087 * 12 11 10
36 36 H 0.97006 * 120.00076 * 180.02562 * 16 15 13
37 37 H 1.08996 * 109.48970 * 183.07079 * 21 11 10
38 38 H 1.08998 * 109.49809 * 303.14677 * 21 11 10
39 39 H 1.08998 * 109.63198 * 111.45255 * 22 8 6
40 40 H 1.08996 * 109.62699 * 350.86883 * 22 8 6
41 41 H 1.08000 * 126.51945 * 179.73856 * 23 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 7 2.2831 2.1301 1.0594
5 6 2.7177 3.3572 0.6639
6 6 3.1126 4.4722 1.5438
7 8 3.3611 5.5635 1.0683
8 7 3.1982 4.2819 2.8753
9 6 3.4581 5.4091 3.7838
10 6 2.4018 5.3931 4.8939
11 7 2.3879 4.0706 5.5331
12 6 1.5124 4.0654 6.7127
13 6 0.0868 4.2949 6.2814
14 1 -0.1362 4.5109 5.2470
15 6 -0.9326 4.2292 7.2072
16 7 -2.1766 4.4300 6.8309
17 14 -0.5468 3.8562 8.9965
18 1 -0.3015 5.1267 9.7252
19 1 -1.6959 3.1458 9.6130
20 1 0.6638 2.9997 9.0737
21 6 1.9951 3.0228 4.5813
22 6 3.0347 2.9416 3.4584
23 6 2.7141 3.3635 -0.6971
24 8 2.2919 2.1522 -1.0931
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5139 0.8898
27 1 -0.3633 0.5138 -0.8901
28 1 1.8933 -0.5139 -0.8899
29 1 1.8932 -0.5138 0.8901
30 1 3.3947 6.3466 3.2314
31 1 4.4510 5.3052 4.2215
32 1 2.6432 6.1536 5.6365
33 1 1.4211 5.6006 4.4657
34 1 1.5886 3.1022 7.2174
35 1 1.8177 4.8584 7.3953
36 1 -2.8939 4.3841 7.4824
37 1 1.9415 2.0643 5.0974
38 1 1.0201 3.2632 4.1576
39 1 3.9868 2.6005 3.8649
40 1 2.6914 2.2479 2.6911
41 1 2.9995 4.1856 -1.3368
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602204785.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:57
Heat of formation + Delta-G solvation = -16.839666 kcal
Electronic energy + Delta-G solvation = -24033.838275 eV
Core-core repulsion = 20529.100270 eV
Total energy + Delta-G solvation = -3504.738005 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-44.55323 -41.12161 -39.08134 -36.43425 -35.82784 -34.89177 -34.31384 -32.13324
-30.74289 -30.25259 -27.49622 -25.54286 -25.33656 -24.41254 -23.52939 -22.49046
-21.58948 -20.38432 -19.09065 -18.55684 -17.88659 -17.81784 -17.12156 -16.54819
-16.30505 -16.05675 -15.84748 -15.71469 -15.47337 -14.99694 -14.79798 -14.48528
-14.46657 -14.05318 -13.80466 -13.57176 -13.11375 -13.10062 -12.66539 -12.64347
-12.41736 -12.37183 -12.22361 -12.08126 -12.03386 -11.75985 -11.69405 -11.55044
-10.83958 -10.71186 -10.16810 -9.77277 -9.06517 -8.33234 -6.39798 0.02002
0.86214 1.36290 1.37560 1.49696 1.52642 1.85777 2.11134 2.33043
2.74963 3.01554 3.25212 3.45212 3.74049 3.99186 4.09108 4.20799
4.25228 4.30565 4.33455 4.35096 4.45151 4.52958 4.55447 4.64288
4.78029 4.84326 4.97482 4.98420 5.02065 5.04058 5.05520 5.15317
5.27182 5.34696 5.46131 5.62324 5.99662 6.20555 6.29722 6.31710
6.46440 6.66349 6.92520 7.27288 8.83531
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.016380 B = 0.004535 C = 0.003863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.948755 B = 6172.643014 C = 7246.334727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.026 4.026
3 C 0.209 3.791
4 N -0.482 5.482
5 C -0.100 4.100
6 C 0.593 3.407
7 O -0.573 6.573
8 N -0.595 5.595
9 C 0.124 3.876
10 C 0.053 3.947
11 N -0.526 5.526
12 C 0.159 3.841
13 C -0.551 4.551
14 H 0.023 0.977
15 C 0.010 3.990
16 N -0.950 5.950
17 Si 0.955 3.045
18 H -0.267 1.267
19 H -0.285 1.285
20 H -0.240 1.240
21 C 0.061 3.939
22 C 0.080 3.920
23 C 0.033 3.967
24 O -0.189 6.189
25 H 0.098 0.902
26 H 0.039 0.961
27 H 0.058 0.942
28 H 0.128 0.872
29 H 0.120 0.880
30 H 0.087 0.913
31 H 0.095 0.905
32 H 0.090 0.910
33 H 0.003 0.997
34 H 0.040 0.960
35 H 0.033 0.967
36 H 0.266 0.734
37 H 0.083 0.917
38 H 0.003 0.997
39 H 0.079 0.921
40 H 0.156 0.844
41 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.774 -10.271 -14.493 21.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.064 4.064
3 C 0.000 4.000
4 N -0.212 5.212
5 C -0.218 4.218
6 C 0.382 3.618
7 O -0.454 6.454
8 N -0.325 5.325
9 C 0.001 3.999
10 C -0.077 4.077
11 N -0.249 5.249
12 C 0.031 3.969
13 C -0.590 4.590
14 H 0.042 0.958
15 C -0.188 4.188
16 N -0.590 5.590
17 Si 0.778 3.222
18 H -0.192 1.192
19 H -0.210 1.210
20 H -0.163 1.163
21 C -0.068 4.068
22 C -0.042 4.042
23 C -0.041 4.041
24 O -0.075 6.075
25 H 0.117 0.883
26 H 0.059 0.941
27 H 0.077 0.923
28 H 0.146 0.854
29 H 0.139 0.861
30 H 0.106 0.894
31 H 0.113 0.887
32 H 0.108 0.892
33 H 0.021 0.979
34 H 0.058 0.942
35 H 0.052 0.948
36 H 0.075 0.925
37 H 0.101 0.899
38 H 0.021 0.979
39 H 0.097 0.903
40 H 0.173 0.827
41 H 0.274 0.726
Dipole moment (debyes) X Y Z Total
from point charges 12.149 -10.026 -13.899 21.007
hybrid contribution -1.506 0.951 0.110 1.785
sum 10.643 -9.075 -13.789 19.641
Atomic orbital electron populations
1.21804 0.92967 1.04340 1.01868 1.20455 0.96719 0.81636 1.07593
1.27391 0.96956 0.97839 0.77770 1.70232 1.17990 1.03167 1.29824
1.21641 1.12002 0.94296 0.93898 1.17162 0.76805 0.85980 0.81843
1.90748 1.53269 1.26009 1.75423 1.48084 1.68380 1.10798 1.05227
1.21802 0.99096 0.89510 0.89455 1.22268 0.96322 0.92641 0.96431
1.62499 1.50806 1.03886 1.07689 1.20122 0.88868 0.97526 0.90356
1.21861 0.93126 1.48825 0.95161 0.95832 1.25987 0.94371 0.94025
1.04441 1.70101 1.00780 1.51373 1.36775 0.85601 0.78855 0.79493
0.78295 1.19199 1.21041 1.16340 1.22169 0.95568 0.95872 0.93227
1.23110 0.99354 0.83930 0.97816 1.25723 0.96628 0.86996 0.94745
1.84432 1.63311 1.22141 1.37627 0.88304 0.94147 0.92252 0.85429
0.86147 0.89425 0.88719 0.89197 0.97901 0.94236 0.94845 0.92504
0.89899 0.97862 0.90301 0.82746 0.72556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16
2 C -0.03 -0.31 6.56 29.85 0.20 -0.12 16
3 C 0.21 4.31 7.56 88.39 0.67 4.98 16
4 N -0.48 -13.26 7.76 -293.03 -2.27 -15.54 16
5 C -0.10 -2.94 6.72 40.41 0.27 -2.67 16
6 C 0.59 20.82 7.69 86.66 0.67 21.48 16
7 O -0.57 -21.98 16.38 -4.07 -0.07 -22.05 16
8 N -0.59 -20.92 3.01 -821.80 -2.47 -23.39 16
9 C 0.12 4.22 6.58 86.35 0.57 4.79 16
10 C 0.05 2.13 5.24 86.39 0.45 2.58 16
11 N -0.53 -22.06 4.83 -899.81 -4.35 -26.41 16
12 C 0.16 7.54 4.21 85.56 0.36 7.90 16
13 C -0.55 -31.84 8.30 25.60 0.21 -31.63 16
14 H 0.02 1.56 6.13 -2.91 -0.02 1.54 16
15 C 0.01 0.56 5.47 84.65 0.46 1.02 16
16 N -0.95 -60.06 13.96 21.44 0.30 -59.76 16
17 Si 0.95 43.69 27.57 68.60 1.89 45.58 16
18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16
19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
20 H -0.24 -10.05 6.40 99.48 0.64 -9.41 16
21 C 0.06 2.45 5.15 86.38 0.45 2.90 16
22 C 0.08 2.65 6.51 86.35 0.56 3.21 16
23 C 0.03 0.72 11.95 67.32 0.80 1.53 16
24 O -0.19 -3.74 10.73 0.33 0.00 -3.74 16
25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16
27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
28 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.12 1.22 8.14 -2.38 -0.02 1.21 16
30 H 0.09 3.00 7.11 -2.39 -0.02 2.98 16
31 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16
32 H 0.09 3.37 8.05 -2.39 -0.02 3.36 16
33 H 0.00 0.13 6.92 -2.38 -0.02 0.11 16
34 H 0.04 1.84 6.85 -2.38 -0.02 1.82 16
35 H 0.03 1.54 7.74 -2.39 -0.02 1.52 16
36 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16
37 H 0.08 3.17 8.11 -2.39 -0.02 3.15 16
38 H 0.00 0.15 6.79 -2.39 -0.02 0.13 16
39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
40 H 0.16 4.91 3.73 -45.73 -0.17 4.73 16
41 H 0.26 3.81 8.06 -2.91 -0.02 3.79 16
Total: -1.00 -76.05 331.47 0.23 -75.83
By element:
Atomic # 1 Polarization: 13.98 SS G_CDS: 0.81 Total: 14.79 kcal
Atomic # 6 Polarization: 8.30 SS G_CDS: 6.38 Total: 14.68 kcal
Atomic # 7 Polarization: -116.30 SS G_CDS: -8.79 Total: -125.10 kcal
Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.79 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 1.89 Total: 45.58 kcal
Total: -76.05 0.23 -75.83 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602204785.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.985 kcal
(2) G-P(sol) polarization free energy of solvation -76.051 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.065 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds