Wall clock time and date at job start Tue Mar 31 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30015 * 127.33370 * 2 1 4 4 O 1.20666 * 112.29823 * 180.29834 * 3 2 1 5 5 C 1.33490 * 113.15380 * 359.68552 * 4 3 2 6 6 C 1.50705 * 126.82557 * 179.97438 * 5 4 3 7 7 C 1.37355 * 106.34699 * 0.02562 * 5 4 3 8 8 C 1.47398 * 128.56778 * 180.02562 * 7 5 4 9 9 O 1.21610 * 120.00362 * 89.72229 * 8 7 5 10 10 N 1.34784 * 119.99800 * 269.99573 * 8 7 5 11 11 C 1.47077 * 120.87916 * 359.44817 * 10 8 7 12 12 C 1.53696 * 108.27870 * 128.75550 * 11 10 8 13 13 N 1.46894 * 109.25562 * 54.07933 * 12 11 10 14 14 C 1.46897 * 110.99886 * 172.61063 * 13 12 11 15 15 C 1.50700 * 109.47081 * 294.29965 * 14 13 12 16 16 H 1.07996 * 120.00029 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99869 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00153 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47145 * 90.00033 * 19 17 15 21 21 H 1.48495 * 109.47222 * 210.00094 * 19 17 15 22 22 H 1.48505 * 109.47058 * 330.00054 * 19 17 15 23 23 C 1.46895 * 111.27156 * 296.75832 * 13 12 11 24 24 C 1.47073 * 120.88187 * 179.72454 * 10 8 7 25 25 H 1.08998 * 109.47329 * 270.19740 * 1 2 3 26 26 H 1.09002 * 109.47139 * 30.19667 * 1 2 3 27 27 H 1.08997 * 109.47469 * 150.19695 * 1 2 3 28 28 H 1.08994 * 109.47004 * 270.02668 * 6 5 4 29 29 H 1.08998 * 109.46960 * 30.03180 * 6 5 4 30 30 H 1.09001 * 109.46995 * 150.02963 * 6 5 4 31 31 H 1.09001 * 109.62626 * 248.52123 * 11 10 8 32 32 H 1.09002 * 109.63024 * 9.10100 * 11 10 8 33 33 H 1.09004 * 109.64591 * 294.07460 * 12 11 10 34 34 H 1.08999 * 109.42309 * 173.94927 * 12 11 10 35 35 H 1.09001 * 109.47294 * 54.30347 * 14 13 12 36 36 H 1.09007 * 109.47413 * 174.30384 * 14 13 12 37 37 H 0.96994 * 119.99947 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.49422 * 303.14841 * 23 13 12 39 39 H 1.08994 * 109.49877 * 183.06564 * 23 13 12 40 40 H 1.09002 * 109.63262 * 350.89577 * 24 10 8 41 41 H 1.09006 * 109.63146 * 111.47720 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0058 5 6 3.6493 -0.6008 -0.0040 6 6 4.9711 -1.3246 -0.0104 7 6 2.3991 -1.1696 0.0036 8 6 2.0400 -2.5992 0.0089 9 8 1.9020 -3.1876 1.0642 10 7 1.8700 -3.2556 -1.1560 11 6 2.0262 -2.5617 -2.4433 12 6 2.9911 -3.3785 -3.3173 13 7 2.5054 -4.7615 -3.4128 14 6 3.2993 -5.5328 -4.3786 15 6 3.0877 -4.9744 -5.7623 16 1 2.4298 -4.1308 -5.9094 17 6 3.7351 -5.5400 -6.8404 18 7 4.5368 -6.5670 -6.6612 19 14 3.4735 -4.8474 -8.5554 20 1 4.4816 -3.7900 -8.8213 21 1 3.6208 -5.9346 -9.5561 22 1 2.1100 -4.2670 -8.6521 23 6 2.4967 -5.4153 -2.0974 24 6 1.5175 -4.6834 -1.1734 25 1 -0.3634 0.0035 1.0276 26 1 -0.3633 0.8882 -0.5169 27 1 -0.3634 -0.8917 -0.5107 28 1 5.2838 -1.5010 -1.0395 29 1 5.7202 -0.7177 0.4981 30 1 4.8653 -2.2789 0.5058 31 1 1.0575 -2.4833 -2.9368 32 1 2.4362 -1.5658 -2.2751 33 1 3.9852 -3.3721 -2.8703 34 1 3.0372 -2.9396 -4.3140 35 1 4.3553 -5.4654 -4.1171 36 1 2.9853 -6.5764 -4.3561 37 1 4.9925 -6.9647 -7.4195 38 1 3.4977 -5.3806 -1.6672 39 1 2.1843 -6.4535 -2.2092 40 1 1.5911 -5.0911 -0.1651 41 1 0.5008 -4.8051 -1.5472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:49 Heat of formation + Delta-G solvation = 12.608809 kcal Electronic energy + Delta-G solvation = -24141.299783 eV Core-core repulsion = 20637.838760 eV Total energy + Delta-G solvation = -3503.461024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.95738 -41.22039 -39.00481 -36.06395 -35.62014 -34.68338 -34.30437 -32.19884 -30.18200 -29.76361 -28.99935 -27.40913 -25.49451 -24.68010 -23.64549 -22.19553 -21.29725 -20.11396 -19.02377 -18.64591 -18.46832 -17.68623 -17.01701 -16.67466 -16.34094 -16.00408 -15.52386 -15.36592 -15.22048 -14.90568 -14.45523 -14.39177 -14.17079 -14.04574 -13.97387 -13.60054 -13.55713 -13.43023 -13.06446 -12.76693 -12.61387 -12.43886 -12.34832 -12.18736 -12.12708 -11.78580 -11.37189 -11.26898 -10.94450 -10.60338 -10.41572 -9.89556 -9.05765 -8.18830 -6.28533 0.22844 0.80990 1.19196 1.44205 1.45520 1.56425 1.65482 2.05130 2.42060 2.99582 3.13496 3.18966 3.22867 3.46397 3.85723 3.90963 4.00104 4.17314 4.21356 4.23500 4.40471 4.43041 4.51241 4.53469 4.56185 4.60058 4.70567 4.73954 4.83273 4.92226 4.97527 5.02246 5.06898 5.18857 5.23157 5.36478 5.65460 6.03842 6.14256 6.30320 6.56893 6.87247 6.87508 7.13635 7.41549 8.92287 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004031 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.808845 B = 6944.458828 C = 7368.949242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.374 5.374 4 O 0.092 5.908 5 C 0.032 3.968 6 C -0.082 4.082 7 C -0.273 4.273 8 C 0.607 3.393 9 O -0.566 6.566 10 N -0.594 5.594 11 C 0.126 3.874 12 C 0.054 3.946 13 N -0.539 5.539 14 C 0.209 3.791 15 C -0.520 4.520 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.263 1.263 23 C 0.043 3.957 24 C 0.126 3.874 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.085 0.915 35 H -0.037 1.037 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.021 0.979 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 12.064 12.227 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.083 5.083 4 O 0.033 5.967 5 C -0.031 4.031 6 C -0.138 4.138 7 C -0.280 4.280 8 C 0.394 3.606 9 O -0.446 6.446 10 N -0.325 5.325 11 C 0.003 3.997 12 C -0.075 4.075 13 N -0.264 5.264 14 C 0.083 3.917 15 C -0.559 4.559 16 H 0.086 0.914 17 C -0.194 4.194 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.086 4.086 24 C 0.004 3.996 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.040 0.960 34 H 0.103 0.897 35 H -0.020 1.020 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.611 12.950 12.511 18.587 hybrid contribution 0.983 -1.035 -0.706 1.592 sum -3.628 11.914 11.805 17.160 Atomic orbital electron populations 1.20351 0.83409 1.05060 1.04690 1.25159 0.99721 0.85896 0.99925 1.73600 0.89461 1.23779 1.21421 1.84516 1.21320 1.22759 1.68097 1.25078 0.98029 0.83406 0.96629 1.20657 0.88251 0.99135 1.05805 1.21796 0.93970 0.94679 1.17546 1.17009 0.76062 0.84390 0.83100 1.90777 1.53083 1.68943 1.31779 1.48201 1.67309 1.11145 1.05858 1.21980 1.00822 0.95084 0.81778 1.22397 0.95142 0.89762 1.00233 1.61988 1.54803 1.02434 1.07131 1.19370 0.89016 0.92699 0.90643 1.21448 1.26505 1.15847 0.92067 0.91409 1.25863 0.94802 0.95238 1.03511 1.70079 1.30659 1.24312 1.32493 0.85430 0.78967 0.77869 0.78655 1.19881 1.21216 1.18745 1.22448 0.97593 0.99059 0.89480 1.21763 0.98976 0.78553 1.00276 0.88783 0.88396 0.89467 0.87484 0.86409 0.89413 0.89368 0.88938 0.95955 0.89691 1.01955 0.97521 0.92766 0.96105 0.89633 0.88592 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.49 71.24 0.75 -0.59 16 2 C 0.06 1.30 7.59 45.16 0.34 1.64 16 3 N -0.37 -9.33 12.01 -44.77 -0.54 -9.87 16 4 O 0.09 2.14 11.06 77.00 0.85 2.99 16 5 C 0.03 0.70 7.44 25.48 0.19 0.89 16 6 C -0.08 -1.28 10.33 71.24 0.74 -0.54 16 7 C -0.27 -6.86 4.26 -18.75 -0.08 -6.94 16 8 C 0.61 17.35 7.49 86.65 0.65 18.00 16 9 O -0.57 -19.54 16.56 -4.06 -0.07 -19.61 16 10 N -0.59 -16.24 3.00 -820.94 -2.47 -18.71 16 11 C 0.13 3.31 6.53 86.50 0.57 3.87 16 12 C 0.05 1.81 5.47 86.54 0.47 2.28 16 13 N -0.54 -21.12 4.62 -898.89 -4.15 -25.28 16 14 C 0.21 10.44 4.72 85.56 0.40 10.84 16 15 C -0.52 -27.62 8.41 25.60 0.22 -27.40 16 16 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 19 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 23 C 0.04 1.43 5.62 86.38 0.49 1.91 16 24 C 0.13 3.50 6.60 86.35 0.57 4.07 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.16 6.32 -2.39 -0.02 2.15 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 3.10 6.67 -2.39 -0.02 3.09 16 35 H -0.04 -2.04 8.12 -2.39 -0.02 -2.06 16 36 H 0.01 0.36 7.97 -2.38 -0.02 0.35 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 40 H 0.10 2.61 7.06 -2.39 -0.02 2.59 16 41 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -66.78 342.77 2.73 -64.05 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.47 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.76 Total: 8.72 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -6.87 Total: -107.91 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.78 Total: -16.62 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -66.78 2.73 -64.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.655 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds