Wall clock time and date at job start Tue Mar 31 2020 03:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.52996 * 109.46850 * 119.99870 * 2 1 3 5 5 N 1.46496 * 109.47161 * 65.00596 * 4 2 1 6 6 C 1.46500 * 119.99901 * 269.99184 * 5 4 2 7 7 C 1.50690 * 109.47594 * 270.00409 * 6 5 4 8 8 H 1.07999 * 120.00126 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00333 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99410 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00113 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46777 * 90.00333 * 11 9 7 13 13 H 1.48496 * 109.47133 * 209.99755 * 11 9 7 14 14 H 1.48493 * 109.47423 * 330.00256 * 11 9 7 15 15 C 1.34778 * 120.00416 * 89.99641 * 5 4 2 16 16 O 1.21283 * 120.00173 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99740 * 359.97438 * 15 5 4 18 18 N 1.46496 * 109.46849 * 179.97438 * 17 15 5 19 19 C 1.35870 * 119.93335 * 90.00217 * 18 17 15 20 20 C 1.36022 * 119.18850 * 179.97438 * 19 18 17 21 21 C 1.39805 * 119.08594 * 0.02562 * 20 19 18 22 22 N 1.31764 * 119.82935 * 359.97438 * 21 20 19 23 23 C 1.33522 * 120.81236 * 0.02562 * 22 21 20 24 24 O 1.21951 * 119.51853 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47391 * 60.00446 * 1 2 3 26 26 H 1.09008 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47909 * 299.99795 * 1 2 3 28 28 H 1.08999 * 109.47022 * 240.00380 * 2 1 3 29 29 H 1.08999 * 109.47273 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47014 * 300.00227 * 3 2 1 31 31 H 1.09003 * 109.47150 * 59.99884 * 3 2 1 32 32 H 1.08996 * 109.47777 * 304.99706 * 4 2 1 33 33 H 1.09006 * 109.46808 * 185.00416 * 4 2 1 34 34 H 1.09002 * 109.46866 * 30.00598 * 6 5 4 35 35 H 1.09006 * 109.46908 * 149.99830 * 6 5 4 36 36 H 0.97008 * 119.99575 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47221 * 60.00230 * 17 15 5 38 38 H 1.08990 * 109.47277 * 300.00270 * 17 15 5 39 39 H 1.07999 * 120.40632 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.45695 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.09130 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1905 6 6 0.3746 -2.5660 1.7613 7 6 0.5716 -2.9408 3.2075 8 1 1.5508 -2.8645 3.6565 9 6 -0.4983 -3.3813 3.9575 10 7 -1.6906 -3.4747 3.4104 11 14 -0.2539 -3.8466 5.7499 12 1 -0.4657 -2.6510 6.6050 13 1 -1.2289 -4.9021 6.1247 14 1 1.1271 -4.3564 5.9452 15 6 2.4715 -3.0330 0.6115 16 8 2.1509 -4.2017 0.5634 17 6 3.7858 -2.5873 0.0240 18 7 4.4858 -3.7441 -0.5401 19 6 4.2831 -4.0926 -1.8376 20 6 4.9412 -5.1691 -2.3458 21 6 5.8086 -5.8883 -1.5183 22 7 5.9773 -5.5171 -0.2653 23 6 5.3285 -4.4596 0.2280 24 8 5.5018 -4.1372 1.3913 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2952 34 1 -0.3484 -1.7532 1.6918 35 1 0.0043 -3.4298 1.2091 36 1 -2.4433 -3.7849 3.9380 37 1 4.3990 -2.1374 0.8048 38 1 3.6027 -1.8544 -0.7616 39 1 3.6083 -3.5216 -2.4580 40 1 4.7951 -5.4646 -3.3743 41 1 6.3398 -6.7454 -1.9051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701262442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:18 Heat of formation + Delta-G solvation = -20.251629 kcal Electronic energy + Delta-G solvation = -24250.390833 eV Core-core repulsion = 20745.504874 eV Total energy + Delta-G solvation = -3504.885959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70513 -39.26978 -36.95791 -36.60806 -35.36392 -33.64773 -32.40633 -31.15730 -29.24306 -27.30688 -26.93182 -25.57881 -24.81816 -23.57965 -22.48753 -20.39797 -18.94497 -18.32994 -17.58515 -16.98966 -16.71770 -16.53732 -15.51020 -15.32358 -14.80652 -14.69417 -14.59446 -14.10630 -13.86505 -13.73511 -13.21048 -12.92813 -12.54932 -12.41521 -12.19256 -12.06065 -11.90314 -11.68292 -11.44675 -11.24429 -11.06622 -10.95693 -10.79653 -10.75631 -10.59598 -10.35416 -10.15626 -9.63492 -9.56569 -9.22328 -8.44359 -8.41559 -7.79073 -6.06719 -4.10602 0.61330 1.70141 2.36265 3.10889 3.31222 3.38161 3.45837 3.66343 3.95891 4.26477 4.30531 4.45251 4.59321 4.73065 4.81166 4.94794 5.03633 5.08198 5.20187 5.26173 5.29252 5.41017 5.57562 5.68253 5.71381 5.76185 6.00323 6.03248 6.06668 6.17129 6.18429 6.40384 6.42489 6.58059 6.95291 7.32661 7.43581 7.84683 7.89844 8.19405 8.21121 8.25148 8.76497 8.96017 9.54670 11.01323 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.005657 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.344452 B = 4947.998783 C = 6414.875989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.109 3.891 5 N -0.586 5.586 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.495 3.505 16 O -0.529 6.529 17 C 0.068 3.932 18 N -0.494 5.494 19 C 0.199 3.801 20 C -0.303 4.303 21 C 0.245 3.755 22 N -0.548 5.548 23 C 0.631 3.369 24 O -0.525 6.525 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 6.776 -16.358 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.016 4.016 5 N -0.317 5.317 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.279 3.721 16 O -0.405 6.405 17 C -0.058 4.058 18 N -0.207 5.207 19 C 0.060 3.940 20 C -0.329 4.329 21 C 0.062 3.938 22 N -0.279 5.279 23 C 0.333 3.667 24 O -0.399 6.399 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.188 0.812 40 H 0.174 0.826 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.166 6.098 -14.654 18.849 hybrid contribution -0.629 0.167 0.395 0.762 sum 9.537 6.265 -14.259 18.263 Atomic orbital electron populations 1.21937 0.94356 1.03165 1.01212 1.21590 0.97389 0.95937 0.98343 1.21792 1.00581 0.95829 1.02042 1.21663 0.99124 0.82197 0.98570 1.48184 1.21675 1.06223 1.55642 1.19456 0.78111 0.96452 0.93407 1.21451 0.95215 1.44578 0.95426 0.92416 1.24902 0.95003 0.95238 0.98791 1.69924 0.99820 1.47065 1.36647 0.86511 0.78264 0.78250 0.84590 1.20557 1.21049 1.19770 1.20207 0.85078 0.86725 0.80123 1.90730 1.74401 1.17069 1.58344 1.22085 0.94766 0.87109 1.01863 1.46133 1.36748 1.27151 1.10645 1.22571 0.92830 0.94279 0.84367 1.21528 1.07032 1.00474 1.03860 1.23640 0.87837 0.94128 0.88174 1.69930 1.27133 1.15687 1.15185 1.18171 0.79331 0.82204 0.86965 1.91015 1.65778 1.68529 1.14538 0.93490 0.91242 0.92313 0.91864 0.92846 0.92688 0.92281 0.89303 0.91663 0.93800 0.94080 0.92726 0.85504 0.86593 0.81236 0.82559 0.81109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.18 37.16 0.30 -1.73 16 2 C -0.11 -1.33 3.12 -90.62 -0.28 -1.62 16 3 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 4 C 0.11 1.62 4.70 -4.05 -0.02 1.61 16 5 N -0.59 -11.77 2.28 -175.06 -0.40 -12.17 16 6 C 0.24 6.17 4.23 -5.20 -0.02 6.15 16 7 C -0.53 -15.15 9.39 -34.44 -0.32 -15.48 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 11 Si 0.90 22.57 29.54 -169.99 -5.02 17.55 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.49 10.02 7.74 -10.98 -0.09 9.93 16 16 O -0.53 -13.37 16.01 5.56 0.09 -13.29 16 17 C 0.07 0.99 4.39 -5.19 -0.02 0.97 16 18 N -0.49 -7.47 2.08 -123.03 -0.26 -7.73 16 19 C 0.20 2.06 10.41 -16.56 -0.17 1.88 16 20 C -0.30 -2.61 10.07 -39.79 -0.40 -3.01 16 21 C 0.25 2.64 11.30 -17.00 -0.19 2.45 16 22 N -0.55 -9.22 10.48 -16.60 -0.17 -9.40 16 23 C 0.63 12.14 8.34 -88.18 -0.74 11.40 16 24 O -0.52 -12.41 16.74 4.96 0.08 -12.33 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.15 5.89 -51.92 -0.31 0.84 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.04 1.09 5.98 -51.93 -0.31 0.78 16 35 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 1.89 6.65 -51.93 -0.35 1.54 16 38 H 0.12 1.09 7.15 -51.93 -0.37 0.72 16 39 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -40.05 344.17 -7.24 -47.29 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.78 Total: -2.60 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -1.71 Total: 13.29 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.09 Total: -55.11 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.17 Total: -25.61 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -40.05 -7.24 -47.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701262442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.043 kcal (2) G-P(sol) polarization free energy of solvation -40.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds