Wall clock time and date at job start Tue Mar 31 2020 04:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46753 * 2 1 4 4 C 1.50705 * 109.47185 * 119.99831 * 2 1 3 5 5 H 1.08000 * 119.99493 * 120.00180 * 4 2 1 6 6 C 1.37875 * 119.99897 * 300.00462 * 4 2 1 7 7 N 1.31520 * 119.99370 * 179.97438 * 6 4 2 8 8 Si 1.86790 * 120.00397 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47547 * 89.99997 * 8 6 4 10 10 H 1.48503 * 109.47432 * 210.00193 * 8 6 4 11 11 H 1.48507 * 109.47224 * 329.99957 * 8 6 4 12 12 C 1.50698 * 109.47394 * 240.00164 * 2 1 3 13 13 O 1.21275 * 119.99950 * 274.79189 * 12 2 1 14 14 N 1.34776 * 119.99841 * 94.78836 * 12 2 1 15 15 C 1.47154 * 120.98331 * 354.69336 * 14 12 2 16 16 C 1.53294 * 108.38527 * 230.51505 * 15 14 12 17 17 O 1.42966 * 109.22172 * 307.69785 * 16 15 14 18 18 C 1.42957 * 114.16644 * 62.58539 * 17 16 15 19 19 H 1.09001 * 109.51193 * 57.33977 * 18 17 16 20 20 C 1.50697 * 109.51157 * 177.44102 * 18 17 16 21 21 C 1.35323 * 126.12559 * 205.02038 * 20 18 17 22 22 C 1.39874 * 107.91861 * 179.97438 * 21 20 18 23 23 N 1.30841 * 108.20150 * 0.02562 * 22 21 20 24 24 N 1.34940 * 126.12780 * 24.71404 * 20 18 17 25 25 C 1.46500 * 126.03803 * 0.03285 * 24 20 18 26 26 C 1.47147 * 120.98173 * 174.67502 * 14 12 2 27 27 H 1.08999 * 109.46968 * 305.07051 * 1 2 3 28 28 H 1.08996 * 109.46999 * 65.07613 * 1 2 3 29 29 H 1.09001 * 109.46497 * 185.07427 * 1 2 3 30 30 H 0.97002 * 119.99086 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.68058 * 110.79193 * 15 14 12 32 32 H 1.08998 * 109.68045 * 350.24066 * 15 14 12 33 33 H 1.09002 * 109.50893 * 187.77764 * 16 15 14 34 34 H 1.08997 * 109.51197 * 67.62372 * 16 15 14 35 35 H 1.07994 * 126.03991 * 359.97438 * 21 20 18 36 36 H 1.07996 * 125.89782 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46940 * 89.99972 * 25 24 20 38 38 H 1.09005 * 109.47373 * 209.99642 * 25 24 20 39 39 H 1.08996 * 109.46985 * 330.00226 * 25 24 20 40 40 H 1.09005 * 109.68221 * 9.76274 * 26 14 12 41 41 H 1.09000 * 109.68328 * 249.21060 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 6 2.0324 -0.7104 -1.2304 13 8 2.1519 -1.9172 -1.2276 14 7 2.3489 -0.0044 -2.3340 15 6 2.1040 1.4450 -2.4023 16 6 1.3449 1.7465 -3.6996 17 8 2.0488 1.1689 -4.8018 18 6 2.1498 -0.2561 -4.7497 19 1 1.1513 -0.6902 -4.6971 20 6 2.8516 -0.7565 -5.9858 21 6 2.7270 -1.9891 -6.5303 22 6 3.5438 -2.0431 -7.6645 23 7 4.1378 -0.8848 -7.7959 24 7 3.7125 -0.0538 -6.7514 25 6 4.1315 1.3320 -6.5275 26 6 2.9500 -0.6602 -3.5062 27 1 -0.3633 0.5905 0.8411 28 1 -0.3633 0.4331 -0.9319 29 1 -0.3632 -1.0237 0.0909 30 1 1.9032 -0.5280 4.4375 31 1 3.0546 1.9784 -2.4007 32 1 1.5060 1.7569 -1.5461 33 1 1.2744 2.8254 -3.8377 34 1 0.3436 1.3197 -3.6431 35 1 2.1066 -2.7895 -6.1553 36 1 3.6634 -2.8940 -8.3187 37 1 5.0186 1.3456 -5.8942 38 1 4.3608 1.8014 -7.4842 39 1 3.3268 1.8801 -6.0374 40 1 2.9123 -1.7424 -3.3810 41 1 3.9858 -0.3388 -3.6157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887587085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:22 Heat of formation + Delta-G solvation = -6.636776 kcal Electronic energy + Delta-G solvation = -24319.665482 eV Core-core repulsion = 20815.369907 eV Total energy + Delta-G solvation = -3504.295575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39554 -41.25991 -39.42575 -35.98960 -35.74715 -34.19823 -33.73018 -33.06921 -30.49082 -28.70908 -27.57827 -27.21110 -25.72305 -24.50305 -22.93515 -22.07388 -21.04221 -20.01980 -18.97292 -18.21845 -17.90979 -17.28433 -17.00932 -16.68005 -16.38758 -16.03179 -15.88092 -15.69458 -15.13976 -14.97743 -14.76633 -14.49540 -14.28161 -14.12016 -13.61635 -13.56816 -13.33013 -13.16463 -12.88175 -12.84273 -12.66141 -12.52075 -12.16172 -11.93315 -11.61394 -11.47940 -11.28177 -11.24010 -10.78176 -10.52351 -10.32552 -9.68833 -9.45581 -8.29724 -6.38709 0.74022 1.34431 1.40393 1.52375 1.60027 1.73174 1.78157 1.98109 2.33917 2.38208 3.04355 3.51333 3.56338 3.72712 3.77221 3.92416 4.02414 4.19483 4.30947 4.35601 4.39115 4.46274 4.48190 4.57683 4.61174 4.67899 4.71772 4.74540 4.77801 4.89969 4.91325 5.01866 5.11478 5.39595 5.42721 5.51717 5.70597 5.89820 6.01538 6.15721 6.40712 6.70884 6.71192 7.20374 7.33113 8.88156 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030701 B = 0.003970 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.815020 B = 7051.371922 C = 7504.552535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.002 4.002 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.018 0.982 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.959 3.041 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.219 1.219 12 C 0.533 3.467 13 O -0.583 6.583 14 N -0.621 5.621 15 C 0.060 3.940 16 C 0.052 3.948 17 O -0.376 6.376 18 C 0.162 3.838 19 H 0.094 0.906 20 C 0.083 3.917 21 C -0.274 4.274 22 C 0.045 3.955 23 N -0.328 5.328 24 N -0.362 5.362 25 C 0.089 3.911 26 C 0.095 3.905 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.213 0.787 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 10.665 -21.425 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.560 4.560 5 H 0.036 0.964 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.226 1.226 11 H -0.142 1.142 12 C 0.324 3.676 13 O -0.462 6.462 14 N -0.356 5.356 15 C -0.062 4.062 16 C -0.025 4.025 17 O -0.295 6.295 18 C 0.101 3.899 19 H 0.112 0.888 20 C -0.047 4.047 21 C -0.304 4.304 22 C -0.140 4.140 23 N -0.151 5.151 24 N -0.145 5.145 25 C -0.051 4.051 26 C -0.029 4.029 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.168 0.832 34 H 0.085 0.915 35 H 0.179 0.821 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.900 10.991 -22.074 24.732 hybrid contribution -0.507 -0.920 1.558 1.879 sum -2.407 10.071 -20.516 22.981 Atomic orbital electron populations 1.21989 0.94508 1.01493 1.01597 1.19301 0.95310 0.97583 0.90155 0.90874 1.20958 1.32131 1.12388 0.90533 0.96376 1.26061 0.97286 1.00967 0.94599 1.70083 1.47423 1.42786 0.98835 0.85714 0.78564 0.78862 0.78537 1.18912 1.22603 1.14187 1.21251 0.75083 0.87052 0.84215 1.90563 1.54984 1.17058 1.83575 1.48299 1.63223 1.09988 1.14130 1.22847 1.03072 0.78991 1.01291 1.23294 0.94358 1.01485 0.83315 1.87828 1.77490 1.18009 1.46217 1.20635 0.97972 0.82957 0.88318 0.88844 1.20742 0.95634 0.93646 0.94645 1.21513 1.10097 0.98102 1.00664 1.24321 0.95108 0.96581 0.97948 1.77306 1.24194 1.03725 1.09827 1.48728 1.33480 1.12624 1.19632 1.22376 1.02955 0.76047 1.03707 1.22038 0.96854 0.99592 0.84397 0.92878 0.90031 0.94079 0.92275 0.89249 0.87260 0.83227 0.91481 0.82094 0.77005 0.90811 0.88941 0.86046 0.89997 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.47 71.98 0.61 -4.58 16 2 C 0.00 -0.09 1.43 -12.28 -0.02 -0.10 16 3 H 0.07 2.81 5.33 -2.39 -0.01 2.79 16 4 C -0.52 -30.47 8.90 25.60 0.23 -30.24 16 5 H 0.02 1.25 7.50 -2.91 -0.02 1.23 16 6 C 0.01 0.44 5.45 84.65 0.46 0.90 16 7 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 8 Si 0.96 40.87 24.32 68.60 1.67 42.54 16 9 H -0.26 -10.64 6.91 99.48 0.69 -9.96 16 10 H -0.30 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.22 -7.61 6.53 99.48 0.65 -6.96 16 12 C 0.53 22.77 6.69 87.66 0.59 23.36 16 13 O -0.58 -30.63 15.58 -3.01 -0.05 -30.67 16 14 N -0.62 -19.20 3.02 -817.35 -2.47 -21.67 16 15 C 0.06 1.23 6.31 86.35 0.54 1.77 16 16 C 0.05 0.73 6.98 72.08 0.50 1.23 16 17 O -0.38 -6.74 7.13 -148.98 -1.06 -7.80 16 18 C 0.16 3.57 3.20 29.95 0.10 3.67 16 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.08 1.94 6.05 41.41 0.25 2.20 16 21 C -0.27 -6.14 10.72 21.99 0.24 -5.90 16 22 C 0.04 0.96 12.03 85.24 1.03 1.98 16 23 N -0.33 -8.35 12.58 -57.02 -0.72 -9.07 16 24 N -0.36 -8.52 4.01 -356.03 -1.43 -9.95 16 25 C 0.09 1.50 11.09 127.77 1.42 2.92 16 26 C 0.09 2.68 5.93 86.36 0.51 3.19 16 27 H 0.05 1.95 3.42 -2.39 -0.01 1.94 16 28 H 0.08 2.24 8.05 -2.39 -0.02 2.23 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.11 2.19 5.61 -2.39 -0.01 2.18 16 33 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.12 1.82 5.20 -2.39 -0.01 1.81 16 40 H 0.08 2.73 7.06 -2.38 -0.02 2.71 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -81.38 326.12 3.66 -77.71 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.97 Total: 18.24 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 6.45 Total: 0.39 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -4.31 Total: -100.40 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.11 Total: -38.48 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.67 Total: 42.54 kcal Total: -81.38 3.66 -77.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887587085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.076 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds