Wall clock time and date at job start Tue Mar 31 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42899 * 112.94200 * 348.07337 * 3 2 1 5 5 C 1.53938 * 113.83828 * 119.75763 * 3 2 1 6 6 N 1.47581 * 86.11654 * 90.74906 * 5 3 2 7 7 C 1.34781 * 134.49452 * 204.63614 * 6 5 3 8 8 O 1.21583 * 120.00215 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99706 * 0.02562 * 7 6 5 10 10 C 1.46495 * 119.99510 * 179.97438 * 9 7 6 11 11 C 1.53035 * 109.46247 * 275.06663 * 10 9 7 12 12 C 1.53192 * 109.31730 * 178.61800 * 11 10 9 13 13 N 1.46921 * 108.77445 * 54.63262 * 12 11 10 14 14 C 1.36939 * 120.63041 * 126.37228 * 13 12 11 15 15 H 1.08002 * 120.00176 * 331.86404 * 14 13 12 16 16 C 1.38815 * 120.00169 * 151.85875 * 14 13 12 17 17 N 1.31613 * 120.00043 * 343.07083 * 16 14 13 18 18 Si 1.86801 * 120.00077 * 163.06771 * 16 14 13 19 19 H 1.48493 * 109.47254 * 90.00116 * 18 16 14 20 20 H 1.48497 * 109.47171 * 210.00583 * 18 16 14 21 21 H 1.48502 * 109.46917 * 330.00029 * 18 16 14 22 22 C 1.46929 * 118.74331 * 306.39603 * 13 12 11 23 23 C 1.53044 * 109.45919 * 155.00171 * 10 9 7 24 24 C 1.47581 * 91.01320 * 24.63977 * 6 5 3 25 25 H 4.45195 * 5.14161 * 180.02562 * 4 1 2 26 26 H 0.96696 * 114.00383 * 48.41278 * 4 3 2 27 27 H 1.09004 * 113.77121 * 205.04995 * 5 3 2 28 28 H 1.08999 * 113.77621 * 336.45107 * 5 3 2 29 29 H 0.96997 * 120.00114 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.46483 * 35.03015 * 10 9 7 31 31 H 1.09003 * 109.49852 * 298.56848 * 11 10 9 32 32 H 1.09002 * 109.50123 * 58.66317 * 11 10 9 33 33 H 1.09004 * 109.58472 * 294.84894 * 12 11 10 34 34 H 1.09000 * 109.70858 * 174.49257 * 12 11 10 35 35 H 0.97004 * 120.00494 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.58304 * 293.81980 * 22 13 12 37 37 H 1.08996 * 109.70613 * 173.46454 * 22 13 12 38 38 H 1.09000 * 109.49477 * 301.33291 * 23 10 9 39 39 H 1.08993 * 109.49754 * 61.43219 * 23 10 9 40 40 H 1.08995 * 113.76691 * 221.05677 * 24 6 5 41 41 H 1.09000 * 113.86921 * 89.67423 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2036 -1.2866 0.2720 5 6 3.2679 0.6998 -1.2224 6 7 3.2445 1.9287 -0.4055 7 6 3.2159 3.2473 -0.6834 8 8 3.2021 4.0591 0.2216 9 7 3.2026 3.6658 -1.9645 10 6 3.1709 5.0989 -2.2664 11 6 1.7228 5.5933 -2.2419 12 6 1.6964 7.0988 -2.5240 13 7 2.4004 7.3555 -3.7878 14 6 1.7933 8.0580 -4.7943 15 1 0.7178 8.0421 -4.8914 16 6 2.5602 8.7907 -5.6898 17 7 3.8080 9.0897 -5.3967 18 14 1.8213 9.3523 -7.3110 19 1 1.1986 10.6887 -7.1346 20 1 2.8894 9.4356 -8.3393 21 1 0.7886 8.3787 -7.7479 22 6 3.7679 6.8438 -3.9514 23 6 3.7709 5.3411 -3.6533 24 6 3.2652 1.1339 0.8379 25 1 -1.0498 -0.0004 -0.0001 26 1 2.8173 -2.0014 -0.2524 27 1 4.2722 0.3518 -1.4638 28 1 2.6091 0.7365 -2.0900 29 1 3.2140 3.0181 -2.6864 30 1 3.7519 5.6404 -1.5199 31 1 1.1468 5.0701 -3.0052 32 1 1.2886 5.3992 -1.2611 33 1 2.1945 7.6311 -1.7136 34 1 0.6642 7.4396 -2.6049 35 1 4.3441 9.6013 -6.0226 36 1 4.4349 7.3553 -3.2574 37 1 4.1042 7.0141 -4.9741 38 1 4.7947 4.9677 -3.6770 39 1 3.1757 4.8203 -4.4033 40 1 2.6043 1.5172 1.6152 41 1 4.2680 0.9127 1.2032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892880211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:38 Heat of formation + Delta-G solvation = 46.216043 kcal Electronic energy + Delta-G solvation = -23486.211379 eV Core-core repulsion = 19984.207674 eV Total energy + Delta-G solvation = -3502.003705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87588 -39.01550 -37.25700 -35.74843 -34.35074 -33.07886 -32.11425 -30.24479 -29.65317 -28.29180 -26.70882 -24.91378 -23.27147 -22.21591 -21.71573 -20.10438 -19.47810 -19.00385 -18.05440 -17.01767 -16.74615 -16.31125 -15.70354 -15.10543 -14.71819 -14.64781 -14.03946 -13.84369 -13.63772 -13.50934 -13.38379 -13.00125 -12.87636 -12.52135 -12.31833 -11.99678 -11.44521 -11.33964 -11.11385 -11.05137 -10.85319 -10.70348 -10.49939 -10.37259 -10.26171 -10.03748 -9.99959 -9.74614 -9.53659 -9.01321 -8.58077 -8.42758 -6.67404 -5.79088 -3.21058 2.12197 2.22598 2.45550 3.25892 3.37340 3.44314 3.46538 3.50397 3.77327 3.92190 4.14728 4.49908 4.80017 4.96954 5.05905 5.19841 5.27024 5.34860 5.36789 5.47609 5.52728 5.59689 5.64108 5.90959 6.09654 6.30029 6.36573 6.52722 6.59753 6.61904 6.81800 6.95053 6.98927 7.00944 7.10045 7.19498 7.32845 7.62583 7.79669 8.06790 8.45169 8.71063 9.21319 9.84649 10.41976 11.29924 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.003085 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.759966 B = 9074.527422 C = 9225.508356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.212 4.212 3 C 0.206 3.794 4 O -0.534 6.534 5 C 0.087 3.913 6 N -0.663 5.663 7 C 0.733 3.267 8 O -0.583 6.583 9 N -0.734 5.734 10 C 0.168 3.832 11 C -0.139 4.139 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.175 3.825 23 C -0.146 4.146 24 C 0.152 3.848 25 H 0.224 0.776 26 H 0.386 0.614 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.390 0.610 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.254 0.746 36 H 0.021 0.979 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -21.759 7.746 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.213 4.213 3 C 0.164 3.836 4 O -0.339 6.339 5 C -0.037 4.037 6 N -0.406 5.406 7 C 0.436 3.564 8 O -0.460 6.460 9 N -0.387 5.387 10 C 0.065 3.935 11 C -0.180 4.180 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.186 4.186 24 C 0.028 3.972 25 H 0.240 0.760 26 H 0.235 0.765 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.223 0.777 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.518 -20.433 8.679 22.252 hybrid contribution -0.847 -0.401 -1.646 1.894 sum -2.365 -20.834 7.033 22.116 Atomic orbital electron populations 1.25080 0.95886 0.97196 0.98477 1.22580 0.93638 1.02834 1.02211 1.19376 0.82980 0.84342 0.96893 1.86614 1.63593 1.16195 1.67497 1.23852 1.01609 0.82549 0.95687 1.48620 1.79721 1.02734 1.09482 1.15330 0.77447 0.79623 0.84003 1.90936 1.58327 1.51277 1.45470 1.45499 1.78969 1.09316 1.04893 1.20957 0.97320 0.77386 0.97842 1.22397 0.95768 0.99517 1.00301 1.20875 0.96697 0.91319 0.89021 1.44095 1.13439 1.62098 1.11941 1.19180 0.91613 1.22340 1.05043 0.91690 1.25052 0.96702 0.97588 1.00332 1.70023 1.08478 1.40918 1.35334 0.86305 0.78158 0.78599 0.83759 1.21389 1.21569 1.20524 1.20735 0.86135 0.86055 1.02215 1.22548 0.99022 1.02572 0.94423 1.22951 1.01521 0.83937 0.88754 0.75951 0.76482 0.88120 0.89719 0.77695 0.89990 0.92494 0.92727 0.96123 0.92575 0.93603 0.96050 0.89013 0.92742 0.92254 0.89098 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 19.25 29.55 0.57 -0.65 16 2 C -0.21 -1.97 12.58 -37.12 -0.47 -2.44 16 3 C 0.21 1.75 1.88 -92.49 -0.17 1.58 16 4 O -0.53 -3.71 13.49 -35.23 -0.48 -4.19 16 5 C 0.09 0.72 7.82 -2.98 -0.02 0.70 16 6 N -0.66 -8.20 3.51 -184.20 -0.65 -8.85 16 7 C 0.73 12.05 8.72 -86.91 -0.76 11.30 16 8 O -0.58 -12.06 16.73 5.29 0.09 -11.97 16 9 N -0.73 -11.21 5.08 -58.64 -0.30 -11.51 16 10 C 0.17 3.07 2.41 -67.89 -0.16 2.91 16 11 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 12 C 0.15 3.26 6.52 -3.71 -0.02 3.23 16 13 N -0.59 -15.00 2.99 -172.32 -0.52 -15.51 16 14 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 15 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 17 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 18 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.18 4.15 5.30 -3.71 -0.02 4.13 16 23 C -0.15 -2.72 5.55 -26.61 -0.15 -2.86 16 24 C 0.15 1.58 8.22 -2.98 -0.02 1.56 16 25 H 0.22 1.07 7.80 -54.10 -0.42 0.65 16 26 H 0.39 1.16 9.02 45.56 0.41 1.57 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.39 4.91 8.21 -40.82 -0.34 4.57 16 30 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -34.39 346.42 -7.89 -42.28 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.24 Total: 4.01 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.61 Total: 9.52 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.84 Total: -61.39 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.39 Total: -16.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.39 -7.89 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892880211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.491 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds