Wall clock time and date at job start Tue Mar 31 2020 03:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42899 * 112.94200 * 348.07337 * 3 2 1 5 5 C 1.53938 * 113.83828 * 119.75763 * 3 2 1 6 6 N 1.47581 * 86.11654 * 90.74906 * 5 3 2 7 7 C 1.34781 * 134.49452 * 204.63614 * 6 5 3 8 8 O 1.21583 * 120.00215 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99706 * 0.02562 * 7 6 5 10 10 C 1.46495 * 119.99510 * 179.97438 * 9 7 6 11 11 C 1.53035 * 109.46247 * 275.06663 * 10 9 7 12 12 C 1.53192 * 109.31730 * 178.61800 * 11 10 9 13 13 N 1.46921 * 108.77445 * 54.63262 * 12 11 10 14 14 C 1.36939 * 120.63041 * 126.37228 * 13 12 11 15 15 H 1.08002 * 120.00176 * 331.86404 * 14 13 12 16 16 C 1.38815 * 120.00169 * 151.85875 * 14 13 12 17 17 N 1.31613 * 120.00043 * 343.07083 * 16 14 13 18 18 Si 1.86801 * 120.00077 * 163.06771 * 16 14 13 19 19 H 1.48493 * 109.47254 * 90.00116 * 18 16 14 20 20 H 1.48497 * 109.47171 * 210.00583 * 18 16 14 21 21 H 1.48502 * 109.46917 * 330.00029 * 18 16 14 22 22 C 1.46929 * 118.74331 * 306.39603 * 13 12 11 23 23 C 1.53044 * 109.45919 * 155.00171 * 10 9 7 24 24 C 1.47581 * 91.01320 * 24.63977 * 6 5 3 25 25 H 4.45195 * 5.14161 * 180.02562 * 4 1 2 26 26 H 0.96696 * 114.00383 * 48.41278 * 4 3 2 27 27 H 1.09004 * 113.77121 * 205.04995 * 5 3 2 28 28 H 1.08999 * 113.77621 * 336.45107 * 5 3 2 29 29 H 0.96997 * 120.00114 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.46483 * 35.03015 * 10 9 7 31 31 H 1.09003 * 109.49852 * 298.56848 * 11 10 9 32 32 H 1.09002 * 109.50123 * 58.66317 * 11 10 9 33 33 H 1.09004 * 109.58472 * 294.84894 * 12 11 10 34 34 H 1.09000 * 109.70858 * 174.49257 * 12 11 10 35 35 H 0.97004 * 120.00494 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.58304 * 293.81980 * 22 13 12 37 37 H 1.08996 * 109.70613 * 173.46454 * 22 13 12 38 38 H 1.09000 * 109.49477 * 301.33291 * 23 10 9 39 39 H 1.08993 * 109.49754 * 61.43219 * 23 10 9 40 40 H 1.08995 * 113.76691 * 221.05677 * 24 6 5 41 41 H 1.09000 * 113.86921 * 89.67423 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2036 -1.2866 0.2720 5 6 3.2679 0.6998 -1.2224 6 7 3.2445 1.9287 -0.4055 7 6 3.2159 3.2473 -0.6834 8 8 3.2021 4.0591 0.2216 9 7 3.2026 3.6658 -1.9645 10 6 3.1709 5.0989 -2.2664 11 6 1.7228 5.5933 -2.2419 12 6 1.6964 7.0988 -2.5240 13 7 2.4004 7.3555 -3.7878 14 6 1.7933 8.0580 -4.7943 15 1 0.7178 8.0421 -4.8914 16 6 2.5602 8.7907 -5.6898 17 7 3.8080 9.0897 -5.3967 18 14 1.8213 9.3523 -7.3110 19 1 1.1986 10.6887 -7.1346 20 1 2.8894 9.4356 -8.3393 21 1 0.7886 8.3787 -7.7479 22 6 3.7679 6.8438 -3.9514 23 6 3.7709 5.3411 -3.6533 24 6 3.2652 1.1339 0.8379 25 1 -1.0498 -0.0004 -0.0001 26 1 2.8173 -2.0014 -0.2524 27 1 4.2722 0.3518 -1.4638 28 1 2.6091 0.7365 -2.0900 29 1 3.2140 3.0181 -2.6864 30 1 3.7519 5.6404 -1.5199 31 1 1.1468 5.0701 -3.0052 32 1 1.2886 5.3992 -1.2611 33 1 2.1945 7.6311 -1.7136 34 1 0.6642 7.4396 -2.6049 35 1 4.3441 9.6013 -6.0226 36 1 4.4349 7.3553 -3.2574 37 1 4.1042 7.0141 -4.9741 38 1 4.7947 4.9677 -3.6770 39 1 3.1757 4.8203 -4.4033 40 1 2.6043 1.5172 1.6152 41 1 4.2680 0.9127 1.2032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892880211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:35 Heat of formation + Delta-G solvation = 20.240943 kcal Electronic energy + Delta-G solvation = -23487.337744 eV Core-core repulsion = 19984.207674 eV Total energy + Delta-G solvation = -3503.130069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81225 -40.22240 -38.81345 -36.49338 -35.99112 -33.98987 -33.64372 -31.90048 -31.35587 -29.43959 -27.48113 -26.73623 -24.34348 -23.88650 -23.24635 -21.30703 -20.90484 -19.86868 -19.18570 -18.56909 -17.79053 -17.42019 -16.83100 -16.63778 -16.13320 -15.66118 -15.52904 -15.36599 -14.94910 -14.82092 -14.67439 -14.30524 -14.10789 -14.00071 -13.54758 -13.21853 -13.01641 -12.70527 -12.61778 -12.52664 -12.25981 -12.02907 -11.96664 -11.88770 -11.69482 -11.58701 -11.43154 -11.27240 -10.92979 -10.56318 -10.25088 -9.66787 -8.71600 -7.88021 -5.33916 1.24032 1.49001 1.49863 1.57907 1.60174 1.67845 2.05420 2.52219 2.78852 2.92767 3.16867 3.28481 3.49680 3.64785 3.85909 4.02910 4.13543 4.26100 4.31911 4.40114 4.43957 4.48820 4.59116 4.62377 4.63506 4.78972 4.84345 5.00752 5.02673 5.04306 5.13586 5.27156 5.45113 5.54537 5.64062 5.69649 6.09251 6.38598 6.50055 6.65847 6.92536 7.14005 7.49311 7.83046 8.36598 9.19331 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.003085 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.759966 B = 9074.527422 C = 9225.508356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.247 4.247 3 C 0.222 3.778 4 O -0.536 6.536 5 C 0.092 3.908 6 N -0.665 5.665 7 C 0.729 3.271 8 O -0.634 6.634 9 N -0.721 5.721 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.146 3.854 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.068 0.932 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.180 3.820 23 C -0.126 4.126 24 C 0.139 3.861 25 H 0.250 0.750 26 H 0.405 0.595 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.407 0.593 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.006 0.994 34 H 0.058 0.942 35 H 0.251 0.749 36 H -0.006 1.006 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 -24.370 6.837 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.248 4.248 3 C 0.179 3.821 4 O -0.344 6.344 5 C -0.030 4.030 6 N -0.406 5.406 7 C 0.432 3.568 8 O -0.515 6.515 9 N -0.375 5.375 10 C 0.076 3.924 11 C -0.163 4.163 12 C 0.019 3.981 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.193 1.193 22 C 0.053 3.947 23 C -0.166 4.166 24 C 0.017 3.983 25 H 0.266 0.734 26 H 0.257 0.743 27 H 0.142 0.858 28 H 0.117 0.883 29 H 0.243 0.757 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.012 0.988 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.395 -23.152 7.760 24.535 hybrid contribution -0.607 0.346 -1.260 1.440 sum -3.002 -22.806 6.501 23.903 Atomic orbital electron populations 1.25867 0.96792 0.96059 0.97173 1.22979 0.94381 1.03967 1.03425 1.18979 0.82632 0.84567 0.95912 1.86576 1.63660 1.16110 1.68090 1.24133 1.03274 0.79883 0.95755 1.48597 1.78147 1.02263 1.11580 1.15441 0.77270 0.80657 0.83472 1.90899 1.60530 1.53287 1.46833 1.45072 1.78883 1.08228 1.05342 1.20548 0.96185 0.79012 0.96699 1.22181 0.96552 0.97129 1.00461 1.20950 0.96263 0.93431 0.87422 1.44352 1.13926 1.62333 1.12640 1.19519 0.91982 1.22370 1.05693 0.91471 1.25834 0.97157 0.98011 1.03458 1.70184 1.09789 1.41863 1.36281 0.85244 0.77403 0.78066 0.79499 1.21391 1.21698 1.19305 1.20558 0.85034 0.89176 0.99888 1.22256 1.00797 0.98725 0.94814 1.23179 1.02353 0.84530 0.88287 0.73421 0.74306 0.85803 0.88322 0.75676 0.92645 0.91538 0.92670 0.97558 0.92309 0.93969 0.98751 0.91637 0.90449 0.91022 0.90439 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 19.25 74.32 1.43 -0.55 16 2 C -0.25 -4.07 12.58 31.13 0.39 -3.67 16 3 C 0.22 3.24 1.88 -11.94 -0.02 3.22 16 4 O -0.54 -5.96 13.49 -148.98 -2.01 -7.97 16 5 C 0.09 1.24 7.82 86.48 0.68 1.91 16 6 N -0.66 -15.34 3.51 -858.79 -3.02 -18.36 16 7 C 0.73 23.29 8.72 179.05 1.56 24.85 16 8 O -0.63 -26.54 16.73 -3.98 -0.07 -26.61 16 9 N -0.72 -20.78 5.08 -457.69 -2.33 -23.10 16 10 C 0.18 6.46 2.41 45.02 0.11 6.57 16 11 C -0.12 -4.60 5.65 30.67 0.17 -4.43 16 12 C 0.15 6.49 6.52 86.36 0.56 7.05 16 13 N -0.61 -31.18 2.99 -699.10 -2.09 -33.27 16 14 C -0.27 -14.67 9.58 84.03 0.81 -13.87 16 15 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 16 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 17 N -0.94 -55.25 11.19 21.65 0.24 -55.01 16 18 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.18 8.67 5.30 86.36 0.46 9.13 16 23 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 24 C 0.14 2.73 8.22 86.48 0.71 3.44 16 25 H 0.25 1.67 7.80 -4.43 -0.03 1.63 16 26 H 0.40 1.18 9.02 -74.06 -0.67 0.51 16 27 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.41 9.01 8.21 -92.71 -0.76 8.25 16 30 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 37 H 0.07 3.50 6.06 -2.39 -0.01 3.49 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.78 346.42 -0.18 -75.95 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.38 Total: 14.97 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.44 Total: 26.94 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -7.19 Total: -129.74 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.08 Total: -34.57 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -75.78 -0.18 -75.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892880211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.193 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds