Wall clock time and date at job start Tue Mar 31 2020 04:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00261 * 2 1 4 4 C 1.52995 * 109.47435 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47237 * 64.99924 * 4 3 2 6 6 C 1.46500 * 119.99811 * 264.52680 * 5 4 3 7 7 C 1.50700 * 109.46891 * 264.90326 * 6 5 4 8 8 H 1.08007 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00131 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99705 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47111 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47007 * 119.99772 * 11 9 7 14 14 H 1.48496 * 109.47062 * 239.99925 * 11 9 7 15 15 C 1.34773 * 120.00141 * 84.52097 * 5 4 3 16 16 O 1.21287 * 119.99712 * 3.73057 * 15 5 4 17 17 C 1.50693 * 120.00176 * 183.72775 * 15 5 4 18 18 H 1.09000 * 109.47092 * 314.00671 * 17 15 5 19 19 C 1.52999 * 109.47256 * 74.00763 * 17 15 5 20 20 C 1.50703 * 109.47339 * 194.01014 * 17 15 5 21 21 C 1.38390 * 119.99778 * 275.02009 * 20 17 15 22 22 N 1.32130 * 119.99224 * 179.72282 * 21 20 17 23 23 C 1.32149 * 120.00212 * 0.51154 * 22 21 20 24 24 C 1.38349 * 120.00152 * 359.48553 * 23 22 21 25 25 N 1.32126 * 120.00011 * 94.99653 * 20 17 15 26 26 H 1.09004 * 109.47084 * 299.99744 * 1 2 3 27 27 H 1.08994 * 109.47098 * 60.00094 * 1 2 3 28 28 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47283 * 59.99495 * 3 2 1 30 30 H 1.09001 * 109.46956 * 300.00307 * 3 2 1 31 31 H 1.09000 * 109.47146 * 304.99687 * 4 3 2 32 32 H 1.08999 * 109.47094 * 184.99471 * 4 3 2 33 33 H 1.08994 * 109.47114 * 24.89799 * 6 5 4 34 34 H 1.08997 * 109.47110 * 144.90168 * 6 5 4 35 35 H 0.97001 * 120.00179 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47460 * 174.98193 * 19 17 15 37 37 H 1.09000 * 109.47063 * 294.98307 * 19 17 15 38 38 H 1.09000 * 109.46967 * 54.98576 * 19 17 15 39 39 H 1.07998 * 120.00300 * 359.97438 * 21 20 17 40 40 H 1.07995 * 120.00046 * 179.76994 * 23 22 21 41 41 H 1.07991 * 119.99690 * 180.27677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2218 -0.8794 -1.3060 7 6 5.6867 -1.1492 -1.0776 8 1 6.3672 -0.3276 -0.9087 9 6 6.1586 -2.4447 -1.0853 10 7 5.3301 -3.4450 -1.2915 11 14 7.9746 -2.7790 -0.8029 12 1 8.6885 -1.4932 -0.5975 13 1 8.1392 -3.6348 0.3995 14 1 8.5398 -3.4748 -1.9869 15 6 4.1570 1.3206 -2.3514 16 8 4.0198 2.5241 -2.2891 17 6 4.5293 0.6715 -3.6595 18 1 5.3268 -0.0524 -3.4918 19 6 3.3070 -0.0417 -4.2410 20 6 5.0031 1.7257 -4.6266 21 6 4.0858 2.4284 -5.3882 22 7 4.5009 3.3565 -6.2321 23 6 5.7926 3.6066 -6.3562 24 6 6.7095 2.9041 -5.5948 25 7 6.2941 1.9794 -4.7470 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1765 0.0901 33 1 3.6360 -1.3772 -0.5334 34 1 3.9305 -1.2602 -2.2849 35 1 5.6620 -4.3564 -1.2973 36 1 3.5511 -0.4351 -5.2278 37 1 3.0184 -0.8622 -3.5840 38 1 2.4806 0.6640 -4.3254 39 1 3.0305 2.2210 -5.2898 40 1 6.1321 4.3626 -7.0487 41 1 7.7647 3.1117 -5.6930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906559140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:39 Heat of formation + Delta-G solvation = -31.604243 kcal Electronic energy + Delta-G solvation = -24314.749792 eV Core-core repulsion = 20809.371547 eV Total energy + Delta-G solvation = -3505.378245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99988 -39.26735 -37.45178 -34.96841 -34.53352 -33.60465 -32.59308 -30.36897 -29.24101 -27.03287 -26.01501 -25.15186 -24.24163 -23.41781 -22.80561 -21.48179 -18.43688 -17.42432 -16.88176 -16.76393 -16.37148 -16.07763 -15.67980 -15.54278 -14.91891 -14.63095 -14.52287 -14.13113 -14.05010 -13.69200 -13.04266 -12.82933 -12.31490 -12.16268 -12.03665 -11.72069 -11.63198 -11.50762 -11.38381 -11.17569 -11.04177 -10.98156 -10.91027 -10.78620 -10.47952 -10.08972 -9.66057 -9.43463 -9.22526 -8.86026 -8.82035 -8.49060 -7.72326 -6.13406 -4.19916 0.98718 1.37055 3.25828 3.30354 3.34696 3.41116 3.70129 4.02847 4.11929 4.27159 4.39939 4.46560 4.72481 4.93128 5.18008 5.23909 5.34756 5.37088 5.38353 5.47141 5.57482 5.60462 5.62401 5.66524 5.70332 5.80987 5.83867 5.99688 6.11665 6.32388 6.36798 6.46657 6.56183 6.84175 7.33087 7.44355 7.49224 7.58011 7.83071 8.01516 8.12160 8.32060 8.81799 8.98195 9.47428 10.93098 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.006901 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.960428 B = 4056.420335 C = 6044.738909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.233 3.767 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.532 3.468 16 O -0.577 6.577 17 C -0.063 4.063 18 H 0.135 0.865 19 C -0.144 4.144 20 C 0.122 3.878 21 C 0.067 3.933 22 N -0.441 5.441 23 C 0.031 3.969 24 C 0.050 3.950 25 N -0.430 5.430 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 8.005 -4.672 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.311 5.311 6 C 0.113 3.887 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.319 3.681 16 O -0.459 6.459 17 C -0.086 4.086 18 H 0.153 0.847 19 C -0.201 4.201 20 C -0.019 4.019 21 C -0.094 4.094 22 N -0.156 5.156 23 C -0.128 4.128 24 C -0.110 4.110 25 N -0.145 5.145 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.261 8.238 -4.628 10.815 hybrid contribution 0.929 -0.093 0.247 0.966 sum -4.331 8.145 -4.381 10.212 Atomic orbital electron populations 1.22682 0.82119 1.02391 0.99219 1.88037 1.18683 1.27506 1.95221 1.23020 0.95256 0.84867 0.99850 1.21342 0.90990 0.99634 0.88192 1.48084 1.63641 1.11278 1.08116 1.19664 0.96464 0.73120 0.99402 1.21588 0.93498 0.92586 1.50078 0.92114 1.24903 0.97940 0.95952 0.94826 1.69934 1.34560 0.99241 1.49033 0.86507 0.85114 0.78429 0.77868 1.19628 1.20933 1.20847 1.19967 0.76437 0.86364 0.85307 1.90601 1.54433 1.14750 1.86134 1.20173 1.01565 0.95974 0.90853 0.84684 1.21901 0.95391 1.00974 1.01867 1.21780 0.89599 0.95655 0.94839 1.23499 1.01595 0.91842 0.92423 1.68410 1.16881 1.13665 1.16626 1.23650 0.89763 0.99838 0.99536 1.23726 1.01741 0.92754 0.92736 1.68285 1.16606 1.14053 1.15521 0.94727 0.94613 0.89846 0.93218 0.93291 0.89294 0.89718 0.93448 0.93845 0.92653 0.91578 0.89309 0.92501 0.81712 0.81806 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.41 10.31 -35.23 -0.36 -6.78 16 3 C 0.05 0.76 6.24 37.16 0.23 1.00 16 4 C 0.12 2.24 5.75 -4.04 -0.02 2.22 16 5 N -0.58 -12.18 2.43 -175.07 -0.43 -12.61 16 6 C 0.23 5.46 4.70 -5.19 -0.02 5.44 16 7 C -0.54 -14.03 8.64 -34.44 -0.30 -14.33 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 11 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.53 11.09 6.81 -10.99 -0.07 11.02 16 16 O -0.58 -12.95 15.66 5.55 0.09 -12.86 16 17 C -0.06 -1.20 2.22 -92.93 -0.21 -1.41 16 18 H 0.14 2.89 6.87 -51.93 -0.36 2.53 16 19 C -0.14 -2.26 8.21 37.16 0.31 -1.95 16 20 C 0.12 2.21 5.13 -82.41 -0.42 1.79 16 21 C 0.07 1.08 10.21 -17.37 -0.18 0.91 16 22 N -0.44 -6.86 10.50 -13.06 -0.14 -7.00 16 23 C 0.03 0.41 11.22 -17.37 -0.20 0.22 16 24 C 0.05 0.71 11.22 -17.37 -0.20 0.52 16 25 N -0.43 -7.84 10.42 -9.29 -0.10 -7.93 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.63 8.03 -51.93 -0.42 1.22 16 32 H 0.08 1.52 7.54 -51.93 -0.39 1.13 16 33 H 0.05 1.20 7.76 -51.93 -0.40 0.80 16 34 H 0.04 1.03 4.55 -51.93 -0.24 0.79 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.50 5.82 -51.93 -0.30 1.20 16 38 H 0.06 0.79 6.80 -51.93 -0.35 0.44 16 39 H 0.17 2.37 6.45 -52.49 -0.34 2.03 16 40 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -31.81 345.19 -5.81 -37.62 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.73 Total: 3.57 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.06 Total: 8.62 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.08 Total: -51.18 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.28 Total: -19.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.81 -5.81 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906559140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.015 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds