Wall clock time and date at job start Tue Mar 31 2020 04:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00261 * 2 1 4 4 C 1.52995 * 109.47435 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47237 * 64.99924 * 4 3 2 6 6 C 1.46500 * 119.99811 * 264.52680 * 5 4 3 7 7 C 1.50700 * 109.46891 * 264.90326 * 6 5 4 8 8 H 1.08007 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00131 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99705 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47111 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47007 * 119.99772 * 11 9 7 14 14 H 1.48496 * 109.47062 * 239.99925 * 11 9 7 15 15 C 1.34773 * 120.00141 * 84.52097 * 5 4 3 16 16 O 1.21287 * 119.99712 * 3.73057 * 15 5 4 17 17 C 1.50693 * 120.00176 * 183.72775 * 15 5 4 18 18 H 1.09000 * 109.47092 * 314.00671 * 17 15 5 19 19 C 1.52999 * 109.47256 * 74.00763 * 17 15 5 20 20 C 1.50703 * 109.47339 * 194.01014 * 17 15 5 21 21 C 1.38390 * 119.99778 * 275.02009 * 20 17 15 22 22 N 1.32130 * 119.99224 * 179.72282 * 21 20 17 23 23 C 1.32149 * 120.00212 * 0.51154 * 22 21 20 24 24 C 1.38349 * 120.00152 * 359.48553 * 23 22 21 25 25 N 1.32126 * 120.00011 * 94.99653 * 20 17 15 26 26 H 1.09004 * 109.47084 * 299.99744 * 1 2 3 27 27 H 1.08994 * 109.47098 * 60.00094 * 1 2 3 28 28 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47283 * 59.99495 * 3 2 1 30 30 H 1.09001 * 109.46956 * 300.00307 * 3 2 1 31 31 H 1.09000 * 109.47146 * 304.99687 * 4 3 2 32 32 H 1.08999 * 109.47094 * 184.99471 * 4 3 2 33 33 H 1.08994 * 109.47114 * 24.89799 * 6 5 4 34 34 H 1.08997 * 109.47110 * 144.90168 * 6 5 4 35 35 H 0.97001 * 120.00179 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47460 * 174.98193 * 19 17 15 37 37 H 1.09000 * 109.47063 * 294.98307 * 19 17 15 38 38 H 1.09000 * 109.46967 * 54.98576 * 19 17 15 39 39 H 1.07998 * 120.00300 * 359.97438 * 21 20 17 40 40 H 1.07995 * 120.00046 * 179.76994 * 23 22 21 41 41 H 1.07991 * 119.99690 * 180.27677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2218 -0.8794 -1.3060 7 6 5.6867 -1.1492 -1.0776 8 1 6.3672 -0.3276 -0.9087 9 6 6.1586 -2.4447 -1.0853 10 7 5.3301 -3.4450 -1.2915 11 14 7.9746 -2.7790 -0.8029 12 1 8.6885 -1.4932 -0.5975 13 1 8.1392 -3.6348 0.3995 14 1 8.5398 -3.4748 -1.9869 15 6 4.1570 1.3206 -2.3514 16 8 4.0198 2.5241 -2.2891 17 6 4.5293 0.6715 -3.6595 18 1 5.3268 -0.0524 -3.4918 19 6 3.3070 -0.0417 -4.2410 20 6 5.0031 1.7257 -4.6266 21 6 4.0858 2.4284 -5.3882 22 7 4.5009 3.3565 -6.2321 23 6 5.7926 3.6066 -6.3562 24 6 6.7095 2.9041 -5.5948 25 7 6.2941 1.9794 -4.7470 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1765 0.0901 33 1 3.6360 -1.3772 -0.5334 34 1 3.9305 -1.2602 -2.2849 35 1 5.6620 -4.3564 -1.2973 36 1 3.5511 -0.4351 -5.2278 37 1 3.0184 -0.8622 -3.5840 38 1 2.4806 0.6640 -4.3254 39 1 3.0305 2.2210 -5.2898 40 1 6.1321 4.3626 -7.0487 41 1 7.7647 3.1117 -5.6930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906559140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:39 Heat of formation + Delta-G solvation = -53.616084 kcal Electronic energy + Delta-G solvation = -24315.704298 eV Core-core repulsion = 20809.371547 eV Total energy + Delta-G solvation = -3506.332750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24159 -40.81968 -38.72631 -36.68783 -35.84977 -34.86145 -34.55687 -31.70845 -30.59624 -28.85317 -27.17875 -26.46038 -25.44104 -24.97992 -24.47310 -22.85579 -20.00523 -18.80298 -18.56796 -18.04346 -17.87255 -17.55583 -17.05266 -16.82724 -16.40693 -16.16154 -15.95196 -15.50225 -15.39509 -14.99326 -14.52731 -14.35421 -13.89905 -13.59895 -13.47771 -13.25490 -13.02256 -12.85503 -12.76637 -12.73492 -12.62360 -12.48163 -12.31087 -12.20980 -12.12180 -11.86546 -11.60553 -10.82548 -10.60038 -10.48788 -10.14685 -10.01314 -9.46437 -8.17601 -6.30740 -0.16980 0.17974 1.39257 1.42449 1.52796 1.69088 2.22214 2.43341 2.79805 2.93444 3.06396 3.12377 3.35727 3.57327 3.66563 3.85861 4.09797 4.16099 4.19939 4.22800 4.38553 4.41188 4.46646 4.54859 4.57304 4.60541 4.67899 4.75055 4.86335 4.87481 4.94314 5.00517 5.14650 5.40728 5.44567 5.69096 5.86555 6.11112 6.28804 6.33540 6.56075 6.83782 6.84638 7.25892 7.41432 8.87877 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.006901 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.960428 B = 4056.420335 C = 6044.738909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.058 3.942 4 C 0.114 3.886 5 N -0.586 5.586 6 C 0.253 3.747 7 C -0.547 4.547 8 H 0.045 0.955 9 C 0.026 3.974 10 N -0.915 5.915 11 Si 0.950 3.050 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.529 3.471 16 O -0.594 6.594 17 C -0.058 4.058 18 H 0.103 0.897 19 C -0.135 4.135 20 C 0.096 3.904 21 C 0.061 3.939 22 N -0.454 5.454 23 C 0.047 3.953 24 C 0.048 3.952 25 N -0.470 5.470 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.026 0.974 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.177 0.823 40 H 0.212 0.788 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 9.206 -5.647 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.019 4.019 4 C -0.009 4.009 5 N -0.315 5.315 6 C 0.132 3.868 7 C -0.586 4.586 8 H 0.063 0.937 9 C -0.175 4.175 10 N -0.554 5.554 11 Si 0.776 3.224 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.318 3.682 16 O -0.477 6.477 17 C -0.081 4.081 18 H 0.121 0.879 19 C -0.192 4.192 20 C -0.044 4.044 21 C -0.097 4.097 22 N -0.169 5.169 23 C -0.113 4.113 24 C -0.112 4.112 25 N -0.185 5.185 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.194 0.806 40 H 0.229 0.771 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.145 9.428 -5.582 12.105 hybrid contribution 0.927 -0.370 0.512 1.122 sum -4.218 9.059 -5.070 11.205 Atomic orbital electron populations 1.22886 0.79863 1.03464 1.00655 1.87988 1.21240 1.28074 1.95491 1.22878 0.93215 0.84865 1.00973 1.21518 0.93177 0.99229 0.86945 1.48073 1.63802 1.10359 1.09246 1.19247 0.94683 0.74506 0.98324 1.21722 0.94523 0.92316 1.50007 0.93693 1.25544 1.01492 0.95789 0.94632 1.70007 1.36088 0.99590 1.49700 0.85630 0.80758 0.78000 0.78046 1.20037 1.20172 1.20220 1.20321 0.75868 0.86179 0.85862 1.90569 1.55341 1.15320 1.86482 1.20054 1.01610 0.95808 0.90586 0.87922 1.21845 0.94779 1.00521 1.02098 1.21625 0.90243 0.96645 0.95887 1.23595 1.01882 0.91878 0.92339 1.68501 1.18254 1.13539 1.16606 1.24426 0.88677 0.99406 0.98829 1.24409 1.03831 0.91448 0.91536 1.68210 1.17013 1.15949 1.17374 0.92606 0.93765 0.89069 0.90115 0.93906 0.89929 0.89545 0.95603 0.94072 0.92336 0.89752 0.90988 0.90611 0.80574 0.77129 0.78067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -13.85 10.31 -148.98 -1.54 -15.38 16 3 C 0.06 1.83 6.24 71.98 0.45 2.28 16 4 C 0.11 4.27 5.75 86.38 0.50 4.77 16 5 N -0.59 -25.28 2.43 -826.18 -2.01 -27.29 16 6 C 0.25 12.32 4.70 85.63 0.40 12.72 16 7 C -0.55 -29.35 8.64 25.60 0.22 -29.13 16 8 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.03 1.40 5.46 84.66 0.46 1.86 16 10 N -0.91 -50.83 13.29 21.45 0.28 -50.54 16 11 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 15 C 0.53 22.60 6.81 87.66 0.60 23.19 16 16 O -0.59 -26.92 15.66 -3.05 -0.05 -26.97 16 17 C -0.06 -2.25 2.22 -12.29 -0.03 -2.28 16 18 H 0.10 4.62 6.87 -2.39 -0.02 4.60 16 19 C -0.13 -4.28 8.21 71.98 0.59 -3.69 16 20 C 0.10 3.46 5.13 42.55 0.22 3.68 16 21 C 0.06 1.94 10.21 84.68 0.86 2.81 16 22 N -0.45 -13.13 10.50 -195.22 -2.05 -15.18 16 23 C 0.05 1.08 11.22 84.67 0.95 2.03 16 24 C 0.05 1.25 11.22 84.67 0.95 2.20 16 25 N -0.47 -16.95 10.42 -183.29 -1.91 -18.86 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 3.13 8.03 -2.39 -0.02 3.11 16 32 H 0.09 3.15 7.54 -2.39 -0.02 3.13 16 33 H 0.03 1.37 7.76 -2.39 -0.02 1.35 16 34 H 0.04 2.03 4.55 -2.39 -0.01 2.02 16 35 H 0.27 14.04 8.31 -92.71 -0.77 13.26 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.51 5.82 -2.39 -0.01 2.50 16 38 H 0.08 2.08 6.80 -2.39 -0.02 2.06 16 39 H 0.18 4.90 6.45 -2.91 -0.02 4.88 16 40 H 0.21 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -69.57 345.19 3.22 -66.35 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.03 Total: 20.40 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 7.42 Total: 22.34 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -5.68 Total: -111.87 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.58 Total: -42.35 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.57 3.22 -66.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906559140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.734 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds