Wall clock time and date at job start Tue Mar 31 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39834 * 126.45737 * 2 1 4 4 C 1.35456 * 107.86217 * 179.97438 * 3 2 1 5 5 N 1.35532 * 108.87336 * 359.97438 * 4 3 2 6 6 H 0.96996 * 125.68190 * 180.02562 * 5 4 3 7 7 C 1.37658 * 108.64302 * 359.75411 * 5 4 3 8 8 C 1.46674 * 126.23045 * 180.26716 * 7 5 4 9 9 O 1.21697 * 119.99671 * 180.14890 * 8 7 5 10 10 N 1.34771 * 120.00331 * 0.15249 * 8 7 5 11 11 C 1.46502 * 119.99985 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46926 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.63734 * 56.69327 * 12 11 10 14 14 C 1.54322 * 110.72606 * 293.54500 * 12 11 10 15 15 N 1.47019 * 107.27509 * 219.44375 * 14 12 11 16 16 C 1.36935 * 125.64889 * 178.90262 * 15 14 12 17 17 H 1.07998 * 120.00209 * 341.52079 * 16 15 14 18 18 C 1.38813 * 119.99889 * 161.51402 * 16 15 14 19 19 N 1.31618 * 119.99845 * 157.61929 * 18 16 15 20 20 Si 1.86798 * 119.99971 * 337.62479 * 18 16 15 21 21 H 1.48502 * 109.47532 * 84.53562 * 20 18 16 22 22 H 1.48503 * 109.46945 * 204.53422 * 20 18 16 23 23 H 1.48496 * 109.47291 * 324.53136 * 20 18 16 24 24 C 1.47429 * 108.69995 * 358.94197 * 15 14 12 25 25 C 1.54903 * 104.83223 * 24.12792 * 24 15 14 26 26 H 1.09004 * 111.00260 * 204.91448 * 25 24 15 27 27 O 1.42904 * 111.00588 * 81.06738 * 25 24 15 28 28 H 1.09007 * 109.46432 * 90.02771 * 1 2 3 29 29 H 1.09003 * 109.47075 * 330.03347 * 1 2 3 30 30 H 1.08994 * 109.47520 * 210.02577 * 1 2 3 31 31 H 1.07994 * 126.06767 * 359.97438 * 3 2 1 32 32 H 1.07997 * 125.56381 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00397 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.47480 * 299.99811 * 11 10 8 35 35 H 1.09000 * 109.47186 * 60.00029 * 11 10 8 36 36 H 1.09001 * 109.87731 * 338.86440 * 14 12 11 37 37 H 1.08998 * 109.88019 * 100.02332 * 14 12 11 38 38 H 0.97004 * 119.99833 * 180.02562 * 19 18 16 39 39 H 1.09004 * 110.36393 * 142.96620 * 24 15 14 40 40 H 1.09000 * 110.36276 * 265.17654 * 24 15 14 41 41 H 0.96696 * 113.99805 * 67.79918 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 0.0006 5 7 3.6284 -0.6626 0.0015 6 1 4.4190 -1.2245 0.0024 7 6 2.3262 -1.1089 0.0071 8 6 1.8898 -2.5092 0.0154 9 8 0.7026 -2.7765 0.0171 10 7 2.8036 -3.4998 0.0213 11 6 2.3676 -4.8985 0.0301 12 6 3.5931 -5.8146 0.0347 13 1 4.2368 -5.5908 0.8854 14 6 4.3747 -5.6878 -1.2899 15 7 4.8266 -7.0368 -1.6609 16 6 5.5376 -7.3589 -2.7860 17 1 5.5595 -6.6784 -3.6243 18 6 6.2304 -8.5602 -2.8489 19 7 6.5361 -9.0831 -4.0174 20 14 6.7287 -9.4345 -1.2752 21 1 5.5970 -10.2652 -0.7907 22 1 7.9022 -10.3044 -1.5425 23 1 7.0830 -8.4293 -0.2412 24 6 4.3866 -7.9852 -0.6215 25 6 3.1638 -7.3055 0.0435 26 1 3.0230 -7.6656 1.0627 27 8 1.9818 -7.5029 -0.7350 28 1 -0.3632 -0.0005 -1.0278 29 1 -0.3633 0.8903 0.5133 30 1 -0.3634 -0.8897 0.5142 31 1 2.0137 2.1548 -0.0004 32 1 4.4973 1.3251 0.0003 33 1 3.7499 -3.2869 0.0196 34 1 1.7693 -5.0870 0.9215 35 1 1.7687 -5.0980 -0.8584 36 1 3.7239 -5.2879 -2.0674 37 1 5.2354 -5.0336 -1.1512 38 1 7.0199 -9.9227 -4.0614 39 1 4.0947 -8.9337 -1.0726 40 1 5.1799 -8.1418 0.1094 41 1 1.6752 -8.4197 -0.7590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958025504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:57 Heat of formation + Delta-G solvation = -12.579466 kcal Electronic energy + Delta-G solvation = -23540.671019 eV Core-core repulsion = 20036.117750 eV Total energy + Delta-G solvation = -3504.553269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.47063 -39.37710 -38.42021 -35.17892 -34.80220 -32.73664 -32.22345 -30.73072 -29.58747 -28.16356 -27.07172 -25.78072 -23.60549 -22.10804 -21.17427 -20.69269 -19.96864 -19.14509 -18.67475 -17.57582 -16.55905 -15.91523 -15.68866 -15.48577 -15.36905 -14.58019 -14.34071 -13.96648 -13.84822 -13.77510 -13.38513 -13.13394 -12.96313 -12.73833 -12.67003 -12.36866 -12.22920 -11.93932 -11.69544 -11.41398 -11.15195 -10.90078 -10.70536 -10.47250 -10.28030 -9.91935 -9.58454 -9.45836 -9.09620 -8.94826 -8.73122 -8.28843 -7.10587 -6.00301 -3.30481 1.36136 2.57572 2.92185 3.13417 3.24700 3.35214 3.38951 3.41769 4.37770 4.46983 4.71606 4.80315 4.82863 5.00808 5.01950 5.07435 5.09449 5.17926 5.38437 5.53461 5.62073 5.65890 5.75101 5.77518 5.81217 6.01020 6.07425 6.09225 6.23362 6.34547 6.37260 6.38593 6.52369 6.58139 6.68031 6.80481 7.18338 7.47880 7.62028 7.96229 8.17453 8.25522 8.76824 9.62162 10.10041 11.15937 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.003524 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.874197 B = 7944.488275 C = 8533.801909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.076 4.076 3 C -0.214 4.214 4 C 0.024 3.976 5 N -0.541 5.541 6 H 0.417 0.583 7 C -0.058 4.058 8 C 0.587 3.413 9 O -0.528 6.528 10 N -0.729 5.729 11 C 0.142 3.858 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.241 4.241 17 H 0.092 0.908 18 C 0.021 3.979 19 N -0.907 5.907 20 Si 0.884 3.116 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.278 1.278 24 C 0.082 3.918 25 C 0.100 3.900 26 H 0.064 0.936 27 O -0.550 6.550 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.393 0.607 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 15.752 12.219 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.238 4.238 4 C -0.112 4.112 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.171 4.171 8 C 0.374 3.626 9 O -0.404 6.404 10 N -0.380 5.380 11 C 0.019 3.981 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.328 5.328 16 C -0.368 4.368 17 H 0.109 0.891 18 C -0.178 4.178 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.204 1.204 24 C -0.044 4.044 25 C 0.039 3.961 26 H 0.081 0.919 27 O -0.355 6.355 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.188 0.812 33 H 0.226 0.774 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.174 15.888 11.933 21.126 hybrid contribution 1.576 -1.331 0.887 2.245 sum -5.598 14.557 12.820 20.189 Atomic orbital electron populations 1.20347 0.89345 1.02782 1.02267 1.19959 0.95906 0.90782 1.01842 1.20796 0.91857 0.98762 1.12421 1.22001 0.99562 0.82978 1.06624 1.41984 1.07254 1.07335 1.57089 0.74580 1.20303 0.83715 0.93677 1.19363 1.17027 0.85922 0.82949 0.76664 1.90812 1.15969 1.83264 1.50406 1.45974 1.09200 1.07016 1.75802 1.21218 0.96041 0.77549 1.03322 1.22559 0.96402 0.93900 1.00008 0.89269 1.21374 0.95347 0.88705 0.92690 1.44596 1.63643 1.00929 1.23598 1.18636 1.23075 1.04701 0.90375 0.89090 1.24996 0.99304 0.97068 0.96387 1.69850 1.42871 1.19364 1.22975 0.86966 0.77796 0.79027 0.84770 1.21377 1.22940 1.20393 1.22672 0.94022 0.95321 0.92337 1.22815 0.85759 0.94530 0.92990 0.91860 1.86465 1.42683 1.32458 1.73934 0.91522 0.92153 0.90111 0.84048 0.81238 0.77390 0.91444 0.89672 0.94310 0.95521 0.92665 0.91795 0.95069 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.84 36.01 0.35 -0.67 16 2 C -0.08 -0.92 6.21 -104.16 -0.65 -1.57 16 3 C -0.21 -2.07 10.76 -39.98 -0.43 -2.50 16 4 C 0.02 0.20 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.84 5.99 -9.39 -0.06 -4.90 16 6 H 0.42 2.65 8.19 -40.82 -0.33 2.31 16 7 C -0.06 -0.72 7.06 -81.98 -0.58 -1.29 16 8 C 0.59 8.42 7.79 -12.86 -0.10 8.32 16 9 O -0.53 -9.21 14.79 5.19 0.08 -9.14 16 10 N -0.73 -9.22 5.40 -61.62 -0.33 -9.56 16 11 C 0.14 2.04 4.59 -4.04 -0.02 2.02 16 12 C -0.11 -1.64 2.95 -88.79 -0.26 -1.90 16 13 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.14 2.74 6.52 -3.07 -0.02 2.72 16 15 N -0.60 -14.21 3.21 -170.08 -0.55 -14.76 16 16 C -0.24 -6.79 10.57 -15.06 -0.16 -6.94 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 19 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 20 Si 0.88 22.01 24.27 -169.99 -4.13 17.88 16 21 H -0.29 -6.79 6.49 56.52 0.37 -6.43 16 22 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 23 H -0.28 -6.75 6.66 56.52 0.38 -6.38 16 24 C 0.08 1.69 4.43 -2.53 -0.01 1.68 16 25 C 0.10 1.59 4.17 -24.59 -0.10 1.49 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 O -0.55 -8.88 12.22 -35.23 -0.43 -9.31 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.05 6.47 -51.93 -0.34 0.72 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.39 4.00 7.46 -40.82 -0.30 3.70 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.46 7.44 -51.93 -0.39 1.07 16 36 H 0.04 0.79 7.76 -51.93 -0.40 0.38 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.41 6.64 -51.93 -0.34 1.07 16 40 H 0.03 0.66 5.57 -51.93 -0.29 0.37 16 41 H 0.38 4.65 9.12 45.56 0.42 5.06 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -35.63 332.27 -6.88 -42.51 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.98 Total: 7.42 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.27 Total: 1.86 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.16 Total: -56.24 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.35 Total: -18.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.63 -6.88 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958025504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.929 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds