Wall clock time and date at job start Tue Mar 31 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47201 * 270.00070 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00290 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00177 * 3 2 1 7 7 C 1.38809 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99864 * 170.66428 * 7 2 1 9 9 N 1.36933 * 120.00046 * 350.65917 * 7 2 1 10 10 C 1.48147 * 127.83856 * 164.90230 * 9 7 2 11 11 C 1.54391 * 104.61782 * 140.41481 * 10 9 7 12 12 H 1.09004 * 118.18069 * 244.20260 * 11 10 9 13 13 C 1.54144 * 104.96490 * 23.82922 * 11 10 9 14 14 H 1.09002 * 121.79335 * 222.19592 * 13 11 10 15 15 C 1.51693 * 127.61646 * 345.17695 * 9 7 2 16 16 C 1.53001 * 118.12069 * 87.19277 * 11 10 9 17 17 H 1.09000 * 117.44524 * 16.06167 * 16 11 10 18 18 N 1.46502 * 117.44107 * 160.81058 * 16 11 10 19 19 C 1.34778 * 119.99888 * 224.00095 * 18 16 11 20 20 O 1.21280 * 120.00064 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.99894 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47057 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.42978 * 56.08867 * 22 21 19 24 24 C 1.54621 * 110.48689 * 178.77285 * 22 21 19 25 25 C 1.54477 * 101.76687 * 143.47829 * 24 22 21 26 26 N 1.46758 * 105.47465 * 334.58551 * 25 24 22 27 27 C 1.34420 * 111.30144 * 17.01153 * 26 25 24 28 28 O 1.21281 * 124.94772 * 179.55723 * 27 26 25 29 29 H 0.97001 * 120.00126 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.40641 * 21.63118 * 10 9 7 31 31 H 1.08999 * 110.40870 * 259.20265 * 10 9 7 32 32 H 1.09004 * 111.96026 * 100.89773 * 15 9 7 33 33 H 1.09004 * 110.49147 * 337.33405 * 15 9 7 34 34 H 0.96998 * 120.00131 * 43.99652 * 18 16 11 35 35 H 1.08994 * 109.47387 * 299.99670 * 21 19 18 36 36 H 1.09006 * 109.47172 * 59.99759 * 21 19 18 37 37 H 1.09007 * 110.97081 * 261.59730 * 24 22 21 38 38 H 1.09005 * 110.97293 * 25.35728 * 24 22 21 39 39 H 1.08999 * 110.24735 * 215.58046 * 25 24 22 40 40 H 1.09005 * 110.31908 * 93.62007 * 25 24 22 41 41 H 0.97004 * 124.35231 * 197.03841 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0796 -1.2082 -0.1523 9 7 1.3392 -2.3802 0.1914 10 6 1.8228 -3.7552 -0.0738 11 6 1.2862 -4.5917 1.1077 12 1 2.0079 -5.0449 1.7873 13 6 0.0628 -3.8099 1.6257 14 1 -0.1270 -3.6807 2.6912 15 6 -0.0706 -2.5674 0.7191 16 6 -0.1172 -5.1896 0.9892 17 1 -0.5638 -5.2302 -0.0042 18 7 -0.4532 -6.3045 1.8783 19 6 -1.1051 -7.3800 1.3936 20 8 -1.4138 -7.4247 0.2216 21 6 -1.4502 -8.5271 2.3079 22 6 -2.1824 -9.6102 1.5132 23 1 -1.5808 -9.9302 0.6625 24 6 -2.5211 -10.8135 2.4233 25 6 -3.9002 -11.2439 1.8764 26 7 -4.4741 -10.0377 1.2684 27 6 -3.5308 -9.1057 1.0483 28 8 -3.7312 -8.0187 0.5490 29 1 -0.4850 0.8400 0.0004 30 1 2.9124 -3.7780 -0.0917 31 1 1.4186 -4.1251 -1.0161 32 1 -0.7842 -2.7568 -0.0829 33 1 -0.3771 -1.7007 1.3048 34 1 -0.2066 -6.2687 2.8157 35 1 -0.5357 -8.9422 2.7312 36 1 -2.0933 -8.1698 3.1123 37 1 -1.7879 -11.6113 2.3041 38 1 -2.5939 -10.5054 3.4664 39 1 -4.5355 -11.5953 2.6894 40 1 -3.7826 -12.0253 1.1256 41 1 -5.4135 -9.9270 1.0534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960257168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:41 Heat of formation + Delta-G solvation = -5.836273 kcal Electronic energy + Delta-G solvation = -23169.377895 eV Core-core repulsion = 19665.117032 eV Total energy + Delta-G solvation = -3504.260862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.75836 -39.36662 -37.99443 -36.43011 -34.23014 -33.20677 -32.45315 -30.20319 -29.13949 -27.06092 -26.32584 -25.24363 -22.24679 -21.94013 -20.55602 -20.31102 -19.56821 -19.11290 -17.52153 -17.06036 -16.80140 -16.58866 -16.08611 -15.23108 -14.73053 -14.61906 -14.11283 -13.84048 -13.56925 -13.54717 -13.13343 -12.97911 -12.71478 -12.66124 -12.19156 -12.09616 -11.82456 -11.37702 -11.35107 -11.31534 -10.93739 -10.78194 -10.34922 -10.13627 -10.06834 -9.82008 -9.62598 -9.47749 -9.29111 -9.09840 -8.67876 -8.18409 -6.81097 -5.72913 -3.05818 2.58480 2.86678 3.15142 3.25131 3.42578 3.47398 3.49554 4.05506 4.09953 4.34338 4.42425 4.52671 4.63945 4.85290 4.96292 5.09196 5.12917 5.25130 5.28684 5.36281 5.43090 5.44230 5.49209 5.64152 5.72465 5.88767 5.97221 6.25217 6.37857 6.61031 6.64264 6.76471 6.84795 6.94751 6.97977 7.39265 7.58478 7.74097 7.76678 8.21230 8.22140 8.51899 9.12386 9.79073 10.56714 11.42136 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.045090 B = 0.002731 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.834729 B =10252.017613 C =10565.343758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.158 3.842 11 C -0.184 4.184 12 H 0.101 0.899 13 C -0.179 4.179 14 H 0.100 0.900 15 C 0.185 3.815 16 C 0.100 3.900 17 H 0.130 0.870 18 N -0.703 5.703 19 C 0.508 3.492 20 O -0.510 6.510 21 C -0.123 4.123 22 C -0.109 4.109 23 H 0.116 0.884 24 C -0.131 4.131 25 C 0.103 3.897 26 N -0.743 5.743 27 C 0.515 3.485 28 O -0.493 6.493 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -25.367 9.813 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.032 3.968 11 C -0.206 4.206 12 H 0.119 0.881 13 C -0.200 4.200 14 H 0.118 0.882 15 C 0.061 3.939 16 C -0.006 4.006 17 H 0.148 0.852 18 N -0.353 5.353 19 C 0.294 3.706 20 O -0.384 6.384 21 C -0.164 4.164 22 C -0.131 4.131 23 H 0.134 0.866 24 C -0.169 4.169 25 C -0.022 4.022 26 N -0.402 5.402 27 C 0.300 3.700 28 O -0.364 6.364 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.229 0.771 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.692 -24.532 8.661 26.631 hybrid contribution 0.144 0.779 0.588 0.986 sum -5.548 -23.753 9.249 26.087 Atomic orbital electron populations 1.69895 1.05027 1.25320 1.56042 1.24874 0.95629 0.97881 1.02111 0.86128 0.78657 0.83396 0.77610 1.21521 1.21619 1.20664 1.19000 0.90773 0.82481 1.42946 0.90590 1.46038 1.12446 0.99731 1.74135 1.21057 0.96971 0.85889 0.92920 1.24353 0.90565 1.02606 1.03039 0.88066 1.24539 1.02456 0.92707 1.00333 0.88199 1.21668 0.86359 0.92288 0.93611 1.21815 0.98016 0.85016 0.95739 0.85192 1.45340 1.59172 1.18362 1.12377 1.20361 0.77795 0.83298 0.89177 1.90768 1.50794 1.79644 1.17175 1.21528 1.02109 0.94224 0.98530 1.21720 0.95892 0.95413 1.00051 0.86594 1.22715 0.96602 0.97745 0.99810 1.21994 0.94842 0.87675 0.97698 1.46260 1.11042 1.17297 1.65566 1.20739 0.87034 0.84185 0.78083 1.90878 1.83430 1.20738 1.41383 0.93604 0.93104 0.95670 0.94994 0.89109 0.77127 0.87968 0.88817 0.88947 0.89697 0.90426 0.91211 0.75367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 10.84 55.49 0.60 -26.99 16 2 C -0.01 -0.23 5.41 -17.43 -0.09 -0.33 16 3 Si 0.91 22.40 29.56 -169.99 -5.03 17.37 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.40 10.36 -15.06 -0.16 -6.56 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 N -0.60 -15.92 3.45 -165.82 -0.57 -16.50 16 10 C 0.16 3.50 7.05 -2.41 -0.02 3.49 16 11 C -0.18 -3.44 7.05 -89.29 -0.63 -4.07 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.56 6.96 -89.29 -0.62 -4.18 16 14 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 15 C 0.19 4.66 5.91 -0.37 0.00 4.65 16 16 C 0.10 1.82 5.97 -67.93 -0.41 1.41 16 17 H 0.13 2.75 7.40 -51.93 -0.38 2.37 16 18 N -0.70 -9.99 5.56 -53.80 -0.30 -10.29 16 19 C 0.51 7.44 7.27 -10.99 -0.08 7.36 16 20 O -0.51 -9.92 13.26 -17.47 -0.23 -10.15 16 21 C -0.12 -1.10 5.12 -27.88 -0.14 -1.25 16 22 C -0.11 -0.97 2.57 -90.63 -0.23 -1.20 16 23 H 0.12 1.11 8.02 -51.93 -0.42 0.70 16 24 C -0.13 -0.56 6.70 -25.10 -0.17 -0.73 16 25 C 0.10 0.46 7.78 -3.13 -0.02 0.43 16 26 N -0.74 -6.11 6.24 -59.20 -0.37 -6.48 16 27 C 0.52 6.43 7.70 -10.86 -0.08 6.34 16 28 O -0.49 -9.05 15.18 -17.47 -0.27 -9.31 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 2.50 6.58 -51.93 -0.34 2.16 16 34 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 38 H 0.08 0.28 7.91 -51.93 -0.41 -0.13 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.41 2.91 8.96 -40.82 -0.37 2.54 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -37.82 336.58 -9.80 -47.62 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.05 Total: 4.27 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.66 Total: 5.38 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.64 Total: -60.25 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.50 Total: -19.47 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.82 -9.80 -47.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960257168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.782 kcal (2) G-P(sol) polarization free energy of solvation -37.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds