Wall clock time and date at job start Tue Mar 31 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47201 * 270.00070 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00290 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00177 * 3 2 1 7 7 C 1.38809 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99864 * 170.66428 * 7 2 1 9 9 N 1.36933 * 120.00046 * 350.65917 * 7 2 1 10 10 C 1.48147 * 127.83856 * 164.90230 * 9 7 2 11 11 C 1.54391 * 104.61782 * 140.41481 * 10 9 7 12 12 H 1.09004 * 118.18069 * 244.20260 * 11 10 9 13 13 C 1.54144 * 104.96490 * 23.82922 * 11 10 9 14 14 H 1.09002 * 121.79335 * 222.19592 * 13 11 10 15 15 C 1.51693 * 127.61646 * 345.17695 * 9 7 2 16 16 C 1.53001 * 118.12069 * 87.19277 * 11 10 9 17 17 H 1.09000 * 117.44524 * 16.06167 * 16 11 10 18 18 N 1.46502 * 117.44107 * 160.81058 * 16 11 10 19 19 C 1.34778 * 119.99888 * 224.00095 * 18 16 11 20 20 O 1.21280 * 120.00064 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.99894 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47057 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.42978 * 56.08867 * 22 21 19 24 24 C 1.54621 * 110.48689 * 178.77285 * 22 21 19 25 25 C 1.54477 * 101.76687 * 143.47829 * 24 22 21 26 26 N 1.46758 * 105.47465 * 334.58551 * 25 24 22 27 27 C 1.34420 * 111.30144 * 17.01153 * 26 25 24 28 28 O 1.21281 * 124.94772 * 179.55723 * 27 26 25 29 29 H 0.97001 * 120.00126 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.40641 * 21.63118 * 10 9 7 31 31 H 1.08999 * 110.40870 * 259.20265 * 10 9 7 32 32 H 1.09004 * 111.96026 * 100.89773 * 15 9 7 33 33 H 1.09004 * 110.49147 * 337.33405 * 15 9 7 34 34 H 0.96998 * 120.00131 * 43.99652 * 18 16 11 35 35 H 1.08994 * 109.47387 * 299.99670 * 21 19 18 36 36 H 1.09006 * 109.47172 * 59.99759 * 21 19 18 37 37 H 1.09007 * 110.97081 * 261.59730 * 24 22 21 38 38 H 1.09005 * 110.97293 * 25.35728 * 24 22 21 39 39 H 1.08999 * 110.24735 * 215.58046 * 25 24 22 40 40 H 1.09005 * 110.31908 * 93.62007 * 25 24 22 41 41 H 0.97004 * 124.35231 * 197.03841 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0796 -1.2082 -0.1523 9 7 1.3392 -2.3802 0.1914 10 6 1.8228 -3.7552 -0.0738 11 6 1.2862 -4.5917 1.1077 12 1 2.0079 -5.0449 1.7873 13 6 0.0628 -3.8099 1.6257 14 1 -0.1270 -3.6807 2.6912 15 6 -0.0706 -2.5674 0.7191 16 6 -0.1172 -5.1896 0.9892 17 1 -0.5638 -5.2302 -0.0042 18 7 -0.4532 -6.3045 1.8783 19 6 -1.1051 -7.3800 1.3936 20 8 -1.4138 -7.4247 0.2216 21 6 -1.4502 -8.5271 2.3079 22 6 -2.1824 -9.6102 1.5132 23 1 -1.5808 -9.9302 0.6625 24 6 -2.5211 -10.8135 2.4233 25 6 -3.9002 -11.2439 1.8764 26 7 -4.4741 -10.0377 1.2684 27 6 -3.5308 -9.1057 1.0483 28 8 -3.7312 -8.0187 0.5490 29 1 -0.4850 0.8400 0.0004 30 1 2.9124 -3.7780 -0.0917 31 1 1.4186 -4.1251 -1.0161 32 1 -0.7842 -2.7568 -0.0829 33 1 -0.3771 -1.7007 1.3048 34 1 -0.2066 -6.2687 2.8157 35 1 -0.5357 -8.9422 2.7312 36 1 -2.0933 -8.1698 3.1123 37 1 -1.7879 -11.6113 2.3041 38 1 -2.5939 -10.5054 3.4664 39 1 -4.5355 -11.5953 2.6894 40 1 -3.7826 -12.0253 1.1256 41 1 -5.4135 -9.9270 1.0534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960257168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:37 Heat of formation + Delta-G solvation = -35.154212 kcal Electronic energy + Delta-G solvation = -23170.649216 eV Core-core repulsion = 19665.117032 eV Total energy + Delta-G solvation = -3505.532184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.60690 -40.69136 -39.44221 -37.29394 -35.93217 -34.32197 -33.82116 -32.02395 -29.80208 -28.92669 -27.74218 -26.60391 -23.61975 -22.69127 -21.97968 -21.72224 -20.81422 -20.46285 -18.86238 -18.30682 -17.92656 -17.55436 -17.44308 -16.71190 -16.06986 -15.69982 -15.46804 -15.15587 -14.78617 -14.64121 -14.54966 -14.39247 -13.72951 -13.56892 -13.42916 -13.27523 -13.20805 -12.90110 -12.75408 -12.70244 -12.30252 -12.13258 -12.04698 -11.84467 -11.80583 -11.61786 -10.96599 -10.83562 -10.70883 -10.51117 -9.96328 -9.60931 -8.95043 -7.91574 -5.27913 1.45840 1.48220 1.57859 1.69474 1.75490 2.09321 2.48745 2.54445 2.88561 3.28969 3.45903 3.51552 3.55428 3.84662 3.85174 3.95631 3.98622 4.13738 4.35506 4.37200 4.45440 4.49400 4.53235 4.68730 4.84490 4.85622 4.89793 4.96530 4.97008 5.16629 5.27482 5.30037 5.38950 5.44048 5.59910 5.63233 6.02841 6.10549 6.12275 6.66955 6.93645 7.38829 7.46658 7.63952 8.44523 9.23251 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.045090 B = 0.002731 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.834729 B =10252.017613 C =10565.343758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.985 3.015 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.622 5.622 10 C 0.150 3.850 11 C -0.160 4.160 12 H 0.141 0.859 13 C -0.181 4.181 14 H 0.126 0.874 15 C 0.187 3.813 16 C 0.116 3.884 17 H 0.092 0.908 18 N -0.689 5.689 19 C 0.498 3.502 20 O -0.565 6.565 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.104 0.896 24 C -0.115 4.115 25 C 0.095 3.905 26 N -0.736 5.736 27 C 0.497 3.503 28 O -0.570 6.570 29 H 0.249 0.751 30 H 0.067 0.933 31 H 0.011 0.989 32 H -0.003 1.003 33 H 0.061 0.939 34 H 0.417 0.583 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -28.317 12.830 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.347 5.347 10 C 0.024 3.976 11 C -0.181 4.181 12 H 0.158 0.842 13 C -0.202 4.202 14 H 0.144 0.856 15 C 0.062 3.938 16 C 0.008 3.992 17 H 0.110 0.890 18 N -0.341 5.341 19 C 0.286 3.714 20 O -0.442 6.442 21 C -0.152 4.152 22 C -0.133 4.133 23 H 0.122 0.878 24 C -0.152 4.152 25 C -0.028 4.028 26 N -0.391 5.391 27 C 0.283 3.717 28 O -0.448 6.448 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.015 0.985 33 H 0.079 0.921 34 H 0.255 0.745 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.137 -27.590 11.744 30.269 hybrid contribution -0.418 1.584 -0.448 1.698 sum -4.555 -26.006 11.296 28.717 Atomic orbital electron populations 1.70115 1.06716 1.25742 1.57416 1.25800 0.96512 1.01498 1.02288 0.85002 0.77752 0.78562 0.77498 1.21304 1.21900 1.18951 1.19447 0.91451 0.83580 1.42308 0.89760 1.46370 1.12780 1.00935 1.74621 1.21209 0.97949 0.84531 0.93906 1.24264 0.90893 1.01466 1.01471 0.84160 1.24234 1.04250 0.91208 1.00472 0.85579 1.21387 0.85540 0.93775 0.93063 1.21274 0.97465 0.85569 0.94859 0.89029 1.45191 1.59041 1.17009 1.12856 1.21547 0.76235 0.84227 0.89361 1.90760 1.52622 1.80760 1.20095 1.21643 1.04474 0.91750 0.97343 1.21797 0.93467 0.97155 1.00850 0.87777 1.22796 0.96719 0.96094 0.99617 1.22372 0.95491 0.86154 0.98820 1.46416 1.10864 1.17745 1.64094 1.21555 0.89215 0.83664 0.77219 1.90834 1.84862 1.24069 1.44986 0.94165 0.91491 0.97102 0.98504 0.92092 0.74539 0.83312 0.86949 0.86076 0.87629 0.87581 0.89934 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 10.84 21.65 0.23 -59.49 16 2 C -0.07 -3.99 5.41 84.86 0.46 -3.53 16 3 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.91 10.36 84.03 0.87 -13.04 16 8 H 0.08 4.63 7.85 -2.91 -0.02 4.61 16 9 N -0.62 -33.96 3.45 -678.54 -2.34 -36.30 16 10 C 0.15 6.66 7.05 86.53 0.61 7.28 16 11 C -0.16 -5.74 7.05 -9.93 -0.07 -5.81 16 12 H 0.14 4.02 8.14 -2.39 -0.02 4.01 16 13 C -0.18 -7.17 6.96 -9.93 -0.07 -7.24 16 14 H 0.13 4.35 8.14 -2.39 -0.02 4.33 16 15 C 0.19 9.89 5.91 85.82 0.51 10.40 16 16 C 0.12 4.23 5.97 44.99 0.27 4.50 16 17 H 0.09 4.13 7.40 -2.39 -0.02 4.12 16 18 N -0.69 -18.38 5.56 -442.52 -2.46 -20.84 16 19 C 0.50 14.13 7.27 87.66 0.64 14.77 16 20 O -0.57 -22.87 13.26 18.99 0.25 -22.62 16 21 C -0.11 -1.63 5.12 29.85 0.15 -1.48 16 22 C -0.11 -1.71 2.57 -10.80 -0.03 -1.74 16 23 H 0.10 1.87 8.02 -2.39 -0.02 1.85 16 24 C -0.11 -0.44 6.70 31.65 0.21 -0.22 16 25 C 0.09 0.49 7.78 86.83 0.68 1.16 16 26 N -0.74 -11.17 6.24 -459.81 -2.87 -14.04 16 27 C 0.50 12.38 7.70 87.90 0.68 13.06 16 28 O -0.57 -22.22 15.18 18.99 0.29 -21.93 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.06 3.55 6.58 -2.39 -0.02 3.53 16 34 H 0.42 7.51 8.83 -92.71 -0.82 6.69 16 35 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.12 -0.13 8.14 -2.38 -0.02 -0.15 16 38 H 0.11 0.04 7.91 -2.38 -0.02 0.02 16 39 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.41 5.66 8.96 -92.71 -0.83 4.83 16 Total: -1.00 -91.18 336.58 -0.55 -91.73 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.59 Total: 16.58 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 4.90 Total: 18.11 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -7.44 Total: -130.67 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: 0.54 Total: -44.55 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -91.18 -0.55 -91.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960257168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.580 kcal (2) G-P(sol) polarization free energy of solvation -91.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds