Wall clock time and date at job start Tue Mar 31 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30017 * 127.33570 * 2 1 4 4 O 1.20659 * 112.30109 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15785 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.82741 * 179.97438 * 5 4 3 7 7 C 1.37365 * 106.33975 * 0.02562 * 5 4 3 8 8 C 1.47402 * 128.56025 * 179.97438 * 7 5 4 9 9 O 1.21604 * 120.00396 * 89.99699 * 8 7 5 10 10 N 1.34778 * 119.99368 * 269.99569 * 8 7 5 11 11 C 1.46502 * 119.99833 * 180.02562 * 10 8 7 12 12 H 1.09011 * 109.46515 * 324.99397 * 11 10 8 13 13 C 1.52994 * 109.47400 * 84.99282 * 11 10 8 14 14 C 1.52999 * 109.47296 * 205.00115 * 11 10 8 15 15 C 1.53938 * 113.74529 * 161.98856 * 14 11 10 16 16 N 1.47808 * 86.03657 * 222.08141 * 15 14 11 17 17 C 1.36937 * 134.45512 * 204.64125 * 16 15 14 18 18 H 1.08005 * 120.00370 * 179.87071 * 17 16 15 19 19 C 1.38819 * 120.00391 * 359.87210 * 17 16 15 20 20 N 1.31625 * 119.99371 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00413 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46936 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47512 * 120.00096 * 21 19 17 24 24 H 1.48502 * 109.46966 * 239.99835 * 21 19 17 25 25 C 1.47571 * 91.05368 * 24.55132 * 16 15 14 26 26 H 1.08999 * 109.47212 * 90.02626 * 1 2 3 27 27 H 1.08998 * 109.47157 * 210.02669 * 1 2 3 28 28 H 1.08998 * 109.47051 * 330.02287 * 1 2 3 29 29 H 1.08994 * 109.47185 * 0.02562 * 6 5 4 30 30 H 1.08998 * 109.47353 * 120.02382 * 6 5 4 31 31 H 1.09007 * 109.46708 * 240.02277 * 6 5 4 32 32 H 0.97000 * 120.00359 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47488 * 295.77560 * 13 11 10 34 34 H 1.09002 * 109.47261 * 55.78018 * 13 11 10 35 35 H 1.09008 * 109.47056 * 175.77083 * 13 11 10 36 36 H 1.09005 * 112.94036 * 293.58066 * 14 11 10 37 37 H 1.09000 * 113.77276 * 336.34881 * 15 14 11 38 38 H 1.09004 * 113.76980 * 107.74177 * 15 14 11 39 39 H 0.96996 * 119.99291 * 179.97438 * 20 19 17 40 40 H 1.09001 * 113.77061 * 221.15379 * 25 16 15 41 41 H 1.08999 * 113.87572 * 89.76348 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9712 -1.3246 0.0018 7 6 2.3991 -1.1696 0.0010 8 6 2.0401 -2.5992 0.0011 9 8 1.8915 -3.1888 1.0543 10 7 1.8765 -3.2530 -1.1661 11 6 1.5191 -4.6737 -1.1660 12 1 2.0017 -5.1697 -0.3238 13 6 0.0011 -4.8178 -1.0411 14 6 1.9868 -5.3173 -2.4729 15 6 2.0675 -6.8534 -2.4132 16 7 3.3402 -6.7128 -3.1516 17 6 4.0635 -7.5288 -3.9800 18 1 4.9912 -7.1784 -4.4079 19 6 3.6044 -8.8064 -4.2700 20 7 2.4741 -9.2336 -3.7482 21 14 4.5907 -9.9192 -5.4005 22 1 5.8134 -9.2074 -5.8522 23 1 4.9771 -11.1519 -4.6681 24 1 3.7656 -10.2826 -6.5805 25 6 3.5170 -5.3401 -2.6398 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 5.7834 -0.5977 0.0015 30 1 5.0432 -1.9494 0.8920 31 1 5.0430 -1.9501 -0.8880 32 1 1.9953 -2.7828 -2.0061 33 1 -0.3229 -4.4268 -0.0767 34 1 -0.4840 -4.2589 -1.8414 35 1 -0.2714 -5.8706 -1.1165 36 1 1.4556 -4.9394 -3.3465 37 1 2.1863 -7.2483 -1.4042 38 1 1.2834 -7.3569 -2.9788 39 1 2.1531 -10.1262 -3.9511 40 1 3.8880 -4.6374 -3.3860 41 1 4.0625 -5.2874 -1.6976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969272559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:26 Heat of formation + Delta-G solvation = 69.636954 kcal Electronic energy + Delta-G solvation = -23579.545623 eV Core-core repulsion = 20078.557526 eV Total energy + Delta-G solvation = -3500.988098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.03647 -39.80569 -38.06718 -34.86469 -34.73672 -33.77427 -32.17944 -30.58609 -28.99057 -28.15164 -27.51372 -25.19560 -24.53498 -23.76924 -21.51331 -20.63185 -20.17711 -19.23915 -17.98553 -17.79428 -16.83993 -16.42304 -16.06600 -14.96488 -14.82034 -14.62652 -14.02967 -13.83508 -13.73715 -13.63257 -13.46721 -13.38436 -13.11014 -12.94073 -12.64000 -12.36715 -12.11003 -11.66871 -11.45893 -11.33170 -11.23659 -10.92167 -10.72549 -10.41105 -10.32188 -10.06857 -9.85549 -9.78386 -9.53904 -9.47053 -8.95632 -8.82418 -6.90582 -5.79710 -3.11841 1.12894 1.72358 2.38941 2.66195 3.26340 3.36974 3.42247 3.44876 3.92619 4.05517 4.42435 4.66792 4.74643 4.99335 5.08058 5.12103 5.16026 5.20562 5.23434 5.33507 5.36480 5.44653 5.50382 5.59716 5.68263 5.76504 5.79662 5.94433 6.02324 6.21156 6.30421 6.39669 6.51185 6.57484 6.73504 7.19069 7.32272 7.50308 7.53695 7.95375 8.02935 8.16549 9.01937 9.68267 10.56804 11.37580 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.003393 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.551378 B = 8249.967772 C = 8907.019978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.359 5.359 4 O 0.094 5.906 5 C 0.021 3.979 6 C -0.082 4.082 7 C -0.252 4.252 8 C 0.598 3.402 9 O -0.528 6.528 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.090 0.910 13 C -0.159 4.159 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.125 3.875 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.040 0.960 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 17.684 6.202 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.066 5.066 4 O 0.033 5.967 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.259 4.259 8 C 0.382 3.618 9 O -0.404 6.404 10 N -0.355 5.355 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.217 4.217 14 C -0.168 4.168 15 C 0.050 3.950 16 N -0.338 5.338 17 C -0.351 4.351 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.001 4.001 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.235 0.765 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.308 18.243 6.768 19.594 hybrid contribution 0.524 -1.224 -0.904 1.609 sum -1.785 17.019 5.863 18.089 Atomic orbital electron populations 1.20226 0.85200 1.04276 1.03820 1.24743 0.98550 0.86556 1.00922 1.73601 0.89183 1.23416 1.20415 1.84529 1.21473 1.22700 1.68026 1.24669 0.97520 0.83605 0.98439 1.20523 0.88786 0.99400 1.05222 1.22003 0.92819 0.95550 1.15573 1.16858 0.76945 0.83663 0.84359 1.90826 1.50539 1.67751 1.31328 1.46135 1.69641 1.11952 1.07784 1.21205 0.95414 0.78976 0.99865 0.89241 1.22119 0.95302 1.02891 1.01410 1.23873 0.97562 1.00149 0.95167 1.22234 0.89975 0.87993 0.94820 1.45973 1.24035 1.11801 1.51964 1.19066 1.02955 0.94208 1.18904 0.90249 1.24782 0.97779 0.97185 1.00676 1.69817 1.21219 1.18316 1.47420 0.86058 0.79063 0.80689 0.80017 1.20484 1.21724 1.21691 1.22530 0.92810 0.88610 0.96137 0.89585 0.89670 0.90016 0.89213 0.88429 0.88244 0.76539 0.92748 0.92678 0.90844 0.89268 0.95347 0.90658 0.93661 0.94174 0.95038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.49 36.01 0.38 -0.30 16 2 C 0.05 0.63 7.59 -79.77 -0.61 0.03 16 3 N -0.36 -4.46 12.01 34.78 0.42 -4.04 16 4 O 0.09 1.08 11.06 18.65 0.21 1.28 16 5 C 0.02 0.22 7.55 -34.63 -0.26 -0.04 16 6 C -0.08 -0.62 10.33 36.00 0.37 -0.25 16 7 C -0.25 -3.06 6.24 -102.89 -0.64 -3.70 16 8 C 0.60 8.20 7.60 -12.53 -0.10 8.11 16 9 O -0.53 -9.18 16.77 5.27 0.09 -9.09 16 10 N -0.71 -8.73 4.94 -54.89 -0.27 -9.00 16 11 C 0.15 2.16 2.29 -67.93 -0.16 2.01 16 12 H 0.09 1.50 7.49 -51.92 -0.39 1.11 16 13 C -0.16 -2.09 9.46 37.15 0.35 -1.74 16 14 C -0.15 -2.50 3.35 -89.70 -0.30 -2.80 16 15 C 0.18 3.93 6.90 -2.84 -0.02 3.91 16 16 N -0.61 -15.21 3.70 -177.74 -0.66 -15.87 16 17 C -0.22 -6.17 10.70 -15.06 -0.16 -6.34 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -26.84 11.39 55.49 0.63 -26.21 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.13 2.39 8.38 -2.97 -0.02 2.37 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.40 4.18 8.59 -40.82 -0.35 3.83 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.00 7.99 -51.92 -0.42 0.58 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 38 H 0.08 1.86 7.17 -51.93 -0.37 1.49 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -33.20 352.05 -6.70 -39.90 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.14 Total: -0.05 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.26 Total: 0.94 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.12 Total: -55.12 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.29 Total: -7.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.20 -6.70 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969272559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.538 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds