Wall clock time and date at job start Tue Mar 31 2020 03:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30017 * 127.33570 * 2 1 4 4 O 1.20659 * 112.30109 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15785 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.82741 * 179.97438 * 5 4 3 7 7 C 1.37365 * 106.33975 * 0.02562 * 5 4 3 8 8 C 1.47402 * 128.56025 * 179.97438 * 7 5 4 9 9 O 1.21604 * 120.00396 * 89.99699 * 8 7 5 10 10 N 1.34778 * 119.99368 * 269.99569 * 8 7 5 11 11 C 1.46502 * 119.99833 * 180.02562 * 10 8 7 12 12 H 1.09011 * 109.46515 * 324.99397 * 11 10 8 13 13 C 1.52994 * 109.47400 * 84.99282 * 11 10 8 14 14 C 1.52999 * 109.47296 * 205.00115 * 11 10 8 15 15 C 1.53938 * 113.74529 * 161.98856 * 14 11 10 16 16 N 1.47808 * 86.03657 * 222.08141 * 15 14 11 17 17 C 1.36937 * 134.45512 * 204.64125 * 16 15 14 18 18 H 1.08005 * 120.00370 * 179.87071 * 17 16 15 19 19 C 1.38819 * 120.00391 * 359.87210 * 17 16 15 20 20 N 1.31625 * 119.99371 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00413 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46936 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47512 * 120.00096 * 21 19 17 24 24 H 1.48502 * 109.46966 * 239.99835 * 21 19 17 25 25 C 1.47571 * 91.05368 * 24.55132 * 16 15 14 26 26 H 1.08999 * 109.47212 * 90.02626 * 1 2 3 27 27 H 1.08998 * 109.47157 * 210.02669 * 1 2 3 28 28 H 1.08998 * 109.47051 * 330.02287 * 1 2 3 29 29 H 1.08994 * 109.47185 * 0.02562 * 6 5 4 30 30 H 1.08998 * 109.47353 * 120.02382 * 6 5 4 31 31 H 1.09007 * 109.46708 * 240.02277 * 6 5 4 32 32 H 0.97000 * 120.00359 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47488 * 295.77560 * 13 11 10 34 34 H 1.09002 * 109.47261 * 55.78018 * 13 11 10 35 35 H 1.09008 * 109.47056 * 175.77083 * 13 11 10 36 36 H 1.09005 * 112.94036 * 293.58066 * 14 11 10 37 37 H 1.09000 * 113.77276 * 336.34881 * 15 14 11 38 38 H 1.09004 * 113.76980 * 107.74177 * 15 14 11 39 39 H 0.96996 * 119.99291 * 179.97438 * 20 19 17 40 40 H 1.09001 * 113.77061 * 221.15379 * 25 16 15 41 41 H 1.08999 * 113.87572 * 89.76348 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9712 -1.3246 0.0018 7 6 2.3991 -1.1696 0.0010 8 6 2.0401 -2.5992 0.0011 9 8 1.8915 -3.1888 1.0543 10 7 1.8765 -3.2530 -1.1661 11 6 1.5191 -4.6737 -1.1660 12 1 2.0017 -5.1697 -0.3238 13 6 0.0011 -4.8178 -1.0411 14 6 1.9868 -5.3173 -2.4729 15 6 2.0675 -6.8534 -2.4132 16 7 3.3402 -6.7128 -3.1516 17 6 4.0635 -7.5288 -3.9800 18 1 4.9912 -7.1784 -4.4079 19 6 3.6044 -8.8064 -4.2700 20 7 2.4741 -9.2336 -3.7482 21 14 4.5907 -9.9192 -5.4005 22 1 5.8134 -9.2074 -5.8522 23 1 4.9771 -11.1519 -4.6681 24 1 3.7656 -10.2826 -6.5805 25 6 3.5170 -5.3401 -2.6398 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 5.7834 -0.5977 0.0015 30 1 5.0432 -1.9494 0.8920 31 1 5.0430 -1.9501 -0.8880 32 1 1.9953 -2.7828 -2.0061 33 1 -0.3229 -4.4268 -0.0767 34 1 -0.4840 -4.2589 -1.8414 35 1 -0.2714 -5.8706 -1.1165 36 1 1.4556 -4.9394 -3.3465 37 1 2.1863 -7.2483 -1.4042 38 1 1.2834 -7.3569 -2.9788 39 1 2.1531 -10.1262 -3.9511 40 1 3.8880 -4.6374 -3.3860 41 1 4.0625 -5.2874 -1.6976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969272559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:25 Heat of formation + Delta-G solvation = 47.863709 kcal Electronic energy + Delta-G solvation = -23580.489782 eV Core-core repulsion = 20078.557526 eV Total energy + Delta-G solvation = -3501.932256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.90853 -41.03124 -39.60096 -36.20909 -35.60745 -34.59754 -34.09475 -31.85192 -29.75187 -29.33233 -28.88454 -26.65240 -25.92743 -25.24053 -22.87645 -21.70939 -21.20630 -20.63232 -18.95283 -18.84586 -18.67308 -17.45447 -17.25139 -16.81814 -16.04346 -15.79361 -15.66782 -15.04097 -14.86904 -14.56158 -14.37402 -14.27382 -14.04126 -13.97247 -13.53477 -13.41586 -13.36397 -13.25879 -13.05971 -12.95633 -12.69687 -12.37754 -12.12071 -11.97626 -11.81516 -11.62714 -11.24898 -11.12997 -10.93843 -10.85861 -10.41195 -10.13475 -8.89539 -7.89161 -5.21970 0.28096 0.85094 1.32410 1.47151 1.47772 1.57843 1.77535 2.25635 2.48722 3.10618 3.25399 3.31829 3.40733 3.66010 3.84696 3.95510 3.98816 4.24860 4.28583 4.45800 4.51954 4.57990 4.59715 4.59879 4.65216 4.78465 4.80059 4.84808 4.89298 4.97836 5.08621 5.08805 5.10952 5.27848 5.33163 5.46556 5.57009 5.67511 5.96311 6.46885 6.94136 7.11295 7.17968 7.62982 8.58385 9.27998 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.003393 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.551378 B = 8249.967772 C = 8907.019978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.378 5.378 4 O 0.090 5.910 5 C 0.036 3.964 6 C -0.084 4.084 7 C -0.277 4.277 8 C 0.609 3.391 9 O -0.568 6.568 10 N -0.691 5.691 11 C 0.162 3.838 12 H 0.067 0.933 13 C -0.154 4.154 14 C -0.110 4.110 15 C 0.170 3.830 16 N -0.644 5.644 17 C -0.234 4.234 18 H 0.084 0.916 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.976 3.024 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.128 3.872 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.013 0.987 38 H 0.045 0.955 39 H 0.248 0.752 40 H 0.062 0.938 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 19.409 5.484 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.087 5.087 4 O 0.031 5.969 5 C -0.028 4.028 6 C -0.141 4.141 7 C -0.284 4.284 8 C 0.394 3.606 9 O -0.447 6.447 10 N -0.341 5.341 11 C 0.057 3.943 12 H 0.085 0.915 13 C -0.212 4.212 14 C -0.130 4.130 15 C 0.044 3.956 16 N -0.370 5.370 17 C -0.362 4.362 18 H 0.102 0.898 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.218 1.218 25 C 0.003 3.997 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.702 20.025 6.031 20.983 hybrid contribution 0.382 -1.711 -0.641 1.867 sum -1.321 18.314 5.390 19.137 Atomic orbital electron populations 1.20356 0.83492 1.04650 1.05098 1.25179 0.99715 0.86070 0.99853 1.73598 0.89545 1.23927 1.21654 1.84516 1.21279 1.23030 1.68083 1.25165 0.98173 0.83261 0.96163 1.20717 0.88061 0.99876 1.05469 1.21871 0.93846 0.94704 1.18023 1.16923 0.75913 0.84073 0.83738 1.90813 1.52349 1.68783 1.32754 1.45900 1.69029 1.10892 1.08309 1.20857 0.96194 0.79841 0.97379 0.91457 1.22063 0.94108 1.02810 1.02223 1.23458 0.96462 0.96148 0.96898 1.22139 0.88616 0.91660 0.93179 1.46398 1.24788 1.13741 1.52101 1.19470 1.03106 0.94768 1.18871 0.89813 1.25601 0.98967 0.98781 1.02670 1.70001 1.22816 1.18274 1.49105 0.85041 0.78117 0.78483 0.77876 1.18895 1.22247 1.21834 1.22696 0.94316 0.86163 0.96526 0.87770 0.89914 0.88991 0.86725 0.88530 0.87352 0.74925 0.92749 0.90626 0.91603 0.87750 0.96885 0.93614 0.94314 0.91997 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.49 71.24 0.75 -0.47 16 2 C 0.05 1.17 7.59 45.15 0.34 1.51 16 3 N -0.38 -8.82 12.01 -44.78 -0.54 -9.36 16 4 O 0.09 1.91 11.06 76.97 0.85 2.76 16 5 C 0.04 0.69 7.55 25.48 0.19 0.89 16 6 C -0.08 -1.07 10.33 71.23 0.74 -0.33 16 7 C -0.28 -6.27 6.24 -18.74 -0.12 -6.39 16 8 C 0.61 15.81 7.60 86.66 0.66 16.46 16 9 O -0.57 -19.41 16.77 -4.04 -0.07 -19.48 16 10 N -0.69 -15.62 4.94 -445.82 -2.20 -17.83 16 11 C 0.16 4.48 2.29 44.99 0.10 4.58 16 12 H 0.07 2.23 7.49 -2.38 -0.02 2.21 16 13 C -0.15 -3.83 9.46 71.98 0.68 -3.15 16 14 C -0.11 -3.56 3.35 -10.14 -0.03 -3.60 16 15 C 0.17 7.71 6.90 86.44 0.60 8.31 16 16 N -0.64 -31.87 3.70 -716.23 -2.65 -34.53 16 17 C -0.23 -12.86 10.70 84.04 0.90 -11.96 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 20 N -0.95 -56.82 11.39 21.65 0.25 -56.58 16 21 Si 0.98 45.14 29.55 68.60 2.03 47.16 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 C 0.13 4.65 8.38 86.49 0.72 5.38 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.41 7.37 8.59 -92.71 -0.80 6.58 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.75 7.99 -2.38 -0.02 1.73 16 36 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.01 0.64 8.04 -2.39 -0.02 0.62 16 38 H 0.05 2.33 7.17 -2.39 -0.02 2.32 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -72.42 352.05 3.90 -68.52 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.24 Total: 11.41 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.00 Total: 7.92 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.15 Total: -118.29 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.78 Total: -16.72 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.42 3.90 -68.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969272559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.384 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds