Wall clock time and date at job start Tue Mar 31 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47365 * 2 1 4 4 O 1.34263 * 126.52168 * 269.97963 * 3 2 1 5 5 C 1.34055 * 108.22179 * 180.02562 * 4 3 2 6 6 N 1.29937 * 109.24600 * 359.71877 * 5 4 3 7 7 C 1.36071 * 108.47261 * 0.44345 * 6 5 4 8 8 C 1.47426 * 126.44621 * 179.82388 * 7 6 5 9 9 O 1.21607 * 120.00223 * 179.69264 * 8 7 6 10 10 N 1.34775 * 119.99700 * 359.68807 * 8 7 6 11 11 C 1.46506 * 119.99693 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46660 * 35.00912 * 11 10 8 13 13 C 1.52997 * 109.47289 * 275.00198 * 11 10 8 14 14 C 1.52999 * 109.46684 * 155.00124 * 11 10 8 15 15 C 1.53945 * 113.74529 * 278.73866 * 14 11 10 16 16 N 1.47807 * 86.04084 * 222.08774 * 15 14 11 17 17 C 1.36936 * 134.45937 * 204.64279 * 16 15 14 18 18 H 1.08005 * 120.00346 * 179.86277 * 17 16 15 19 19 C 1.38811 * 119.99896 * 359.87268 * 17 16 15 20 20 N 1.31623 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00199 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47031 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47325 * 119.99616 * 21 19 17 24 24 H 1.48504 * 109.47317 * 239.99651 * 21 19 17 25 25 C 1.47576 * 91.04962 * 24.54882 * 16 15 14 26 26 H 1.08999 * 109.47042 * 60.00073 * 1 2 3 27 27 H 1.08994 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46912 * 300.00186 * 1 2 3 29 29 H 1.08999 * 109.46912 * 239.99814 * 2 1 3 30 30 H 1.08999 * 109.47042 * 119.99926 * 2 1 3 31 31 H 1.08002 * 125.37702 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00190 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 35 35 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 36 36 H 1.09002 * 112.94852 * 50.34103 * 14 11 10 37 37 H 1.08997 * 113.76654 * 336.35575 * 15 14 11 38 38 H 1.09002 * 113.76615 * 107.75050 * 15 14 11 39 39 H 0.96992 * 119.99763 * 180.02562 * 20 19 17 40 40 H 1.09006 * 113.77253 * 221.14869 * 25 16 15 41 41 H 1.09000 * 113.87108 * 89.76663 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0790 5 6 2.7238 3.3738 -0.6581 6 7 2.7252 3.3961 0.6411 7 6 2.3025 2.1844 1.0936 8 6 2.1583 1.7775 2.5032 9 8 1.7628 0.6605 2.7763 10 7 2.4648 2.6437 3.4892 11 6 2.3209 2.2395 4.8901 12 1 2.5722 1.1838 4.9912 13 6 0.8762 2.4655 5.3403 14 6 3.2628 3.0736 5.7607 15 6 4.7152 2.5632 5.7676 16 7 4.6945 2.8317 7.2209 17 6 5.6538 3.1008 8.1604 18 1 5.3705 3.2667 9.1893 19 6 6.9903 3.1605 7.7901 20 7 7.3355 2.9580 6.5363 21 14 8.2988 3.5283 9.0714 22 1 7.6552 3.7160 10.3966 23 1 9.2556 2.3947 9.1414 24 1 9.0260 4.7672 8.6949 25 6 3.2253 2.6956 7.2526 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0146 4.1939 -1.2978 32 1 2.7799 3.5348 3.2715 33 1 0.7691 2.1644 6.3824 34 1 0.2052 1.8713 4.7200 35 1 0.6250 3.5214 5.2391 36 1 3.1748 4.1444 5.5770 37 1 4.8108 1.5067 5.5173 38 1 5.4063 3.1975 5.2124 39 1 8.2694 2.9994 6.2777 40 1 2.7290 3.4353 7.8809 41 1 2.8804 1.6787 7.4396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969411331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:00 Heat of formation + Delta-G solvation = 32.041486 kcal Electronic energy + Delta-G solvation = -23482.202534 eV Core-core repulsion = 19979.584174 eV Total energy + Delta-G solvation = -3502.618359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57967 -39.61838 -37.99697 -35.06631 -34.84327 -34.13804 -32.14805 -30.53809 -29.21977 -27.48206 -25.27260 -24.50618 -23.91416 -23.56123 -21.94902 -20.90354 -20.29901 -19.23098 -17.90642 -16.98321 -16.72113 -16.22911 -16.04498 -15.21604 -14.87699 -14.72373 -14.62053 -14.03709 -13.81470 -13.60510 -13.39252 -13.03574 -12.80574 -12.40679 -12.11660 -11.95597 -11.63662 -11.47564 -11.45203 -11.25968 -11.25119 -10.89855 -10.84633 -10.68836 -10.31444 -10.03339 -9.76259 -9.70656 -9.37033 -9.11991 -8.76510 -8.70957 -6.83226 -5.72662 -3.04942 0.99552 1.96373 2.39579 3.27259 3.39251 3.41211 3.46195 3.48977 3.93171 4.41613 4.48338 4.71979 4.88256 4.99609 5.10098 5.16639 5.31774 5.33694 5.34610 5.56982 5.59604 5.63967 5.69793 5.83289 5.88390 5.95928 5.97408 6.02036 6.07965 6.27927 6.39545 6.44470 6.62717 6.70303 6.84066 7.28038 7.28860 7.41420 7.61206 7.76264 8.02201 8.34024 9.08530 9.74880 10.64549 11.44415 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.003418 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.853544 B = 8189.544935 C = 8824.127347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.041 3.959 4 O -0.201 6.201 5 C 0.171 3.829 6 N -0.460 5.460 7 C -0.070 4.070 8 C 0.601 3.399 9 O -0.539 6.539 10 N -0.698 5.698 11 C 0.150 3.850 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.171 3.829 16 N -0.613 5.613 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.131 3.869 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.254 0.746 32 H 0.408 0.592 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.252 0.748 40 H 0.044 0.956 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 -1.361 -16.123 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.015 4.015 4 O -0.088 6.088 5 C -0.057 4.057 6 N -0.189 5.189 7 C -0.190 4.190 8 C 0.386 3.614 9 O -0.417 6.417 10 N -0.347 5.347 11 C 0.046 3.954 12 H 0.107 0.893 13 C -0.216 4.216 14 C -0.167 4.167 15 C 0.045 3.955 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.004 3.996 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.270 0.730 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.972 -1.576 -15.395 20.850 hybrid contribution 0.968 0.295 -0.002 1.012 sum -13.004 -1.281 -15.397 20.195 Atomic orbital electron populations 1.21695 0.93155 1.02841 1.02354 1.20387 0.97015 0.85450 1.05505 1.23802 0.98835 0.95544 0.83358 1.84366 1.63748 1.24295 1.36366 1.28006 0.99449 0.86998 0.91295 1.70767 1.16724 1.21288 1.10112 1.21606 1.10207 0.91372 0.95856 1.16693 0.77625 0.84600 0.82499 1.90760 1.47678 1.20089 1.83195 1.45907 1.65714 1.17116 1.05966 1.21158 0.95118 1.00481 0.78673 0.89291 1.22132 0.96209 1.01582 1.01690 1.23823 0.97670 0.99457 0.95717 1.22292 0.90115 0.97111 0.85937 1.45998 1.00507 1.81726 1.05673 1.19076 0.85958 1.40566 0.89368 0.90221 1.24787 0.96847 1.02349 0.96564 1.69836 1.16146 1.55644 1.15166 0.86060 0.81861 0.77509 0.80410 1.20474 1.21782 1.21737 1.22487 0.87187 0.97577 0.92330 0.92775 0.91091 0.91725 0.89854 0.86304 0.73015 0.75682 0.91305 0.92769 0.92696 0.89338 0.95635 0.91017 0.93754 0.93759 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.05 -0.46 5.93 -27.88 -0.17 -0.62 16 3 C 0.04 0.49 6.69 -35.08 -0.23 0.26 16 4 O -0.20 -2.09 10.73 6.48 0.07 -2.02 16 5 C 0.17 1.58 13.19 51.96 0.69 2.27 16 6 N -0.46 -5.93 11.06 -11.48 -0.13 -6.05 16 7 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16 8 C 0.60 9.49 7.78 -12.52 -0.10 9.40 16 9 O -0.54 -9.28 14.46 5.27 0.08 -9.21 16 10 N -0.70 -10.75 5.07 -54.88 -0.28 -11.03 16 11 C 0.15 2.41 2.38 -67.93 -0.16 2.25 16 12 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 13 C -0.16 -2.16 9.31 37.16 0.35 -1.81 16 14 C -0.15 -2.73 3.47 -89.69 -0.31 -3.04 16 15 C 0.17 4.11 7.08 -2.84 -0.02 4.09 16 16 N -0.61 -16.05 3.70 -177.69 -0.66 -16.70 16 17 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -27.89 11.39 55.49 0.63 -27.26 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.13 2.67 7.64 -2.97 -0.02 2.65 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.12 1.36 6.48 -51.93 -0.34 1.03 16 31 H 0.25 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.41 6.01 8.33 -40.82 -0.34 5.67 16 33 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 38 H 0.07 1.91 7.17 -51.93 -0.37 1.54 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -34.21 346.18 -6.55 -40.76 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.01 Total: 2.71 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.45 Total: 6.11 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.43 Total: -61.04 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.15 Total: -11.23 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.21 -6.55 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969411331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.801 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds