Wall clock time and date at job start Tue Mar 31 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47365 * 2 1 4 4 O 1.34263 * 126.52168 * 269.97963 * 3 2 1 5 5 C 1.34055 * 108.22179 * 180.02562 * 4 3 2 6 6 N 1.29937 * 109.24600 * 359.71877 * 5 4 3 7 7 C 1.36071 * 108.47261 * 0.44345 * 6 5 4 8 8 C 1.47426 * 126.44621 * 179.82388 * 7 6 5 9 9 O 1.21607 * 120.00223 * 179.69264 * 8 7 6 10 10 N 1.34775 * 119.99700 * 359.68807 * 8 7 6 11 11 C 1.46506 * 119.99693 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46660 * 35.00912 * 11 10 8 13 13 C 1.52997 * 109.47289 * 275.00198 * 11 10 8 14 14 C 1.52999 * 109.46684 * 155.00124 * 11 10 8 15 15 C 1.53945 * 113.74529 * 278.73866 * 14 11 10 16 16 N 1.47807 * 86.04084 * 222.08774 * 15 14 11 17 17 C 1.36936 * 134.45937 * 204.64279 * 16 15 14 18 18 H 1.08005 * 120.00346 * 179.86277 * 17 16 15 19 19 C 1.38811 * 119.99896 * 359.87268 * 17 16 15 20 20 N 1.31623 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00199 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47031 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47325 * 119.99616 * 21 19 17 24 24 H 1.48504 * 109.47317 * 239.99651 * 21 19 17 25 25 C 1.47576 * 91.04962 * 24.54882 * 16 15 14 26 26 H 1.08999 * 109.47042 * 60.00073 * 1 2 3 27 27 H 1.08994 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46912 * 300.00186 * 1 2 3 29 29 H 1.08999 * 109.46912 * 239.99814 * 2 1 3 30 30 H 1.08999 * 109.47042 * 119.99926 * 2 1 3 31 31 H 1.08002 * 125.37702 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00190 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 35 35 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 36 36 H 1.09002 * 112.94852 * 50.34103 * 14 11 10 37 37 H 1.08997 * 113.76654 * 336.35575 * 15 14 11 38 38 H 1.09002 * 113.76615 * 107.75050 * 15 14 11 39 39 H 0.96992 * 119.99763 * 180.02562 * 20 19 17 40 40 H 1.09006 * 113.77253 * 221.14869 * 25 16 15 41 41 H 1.09000 * 113.87108 * 89.76663 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0790 5 6 2.7238 3.3738 -0.6581 6 7 2.7252 3.3961 0.6411 7 6 2.3025 2.1844 1.0936 8 6 2.1583 1.7775 2.5032 9 8 1.7628 0.6605 2.7763 10 7 2.4648 2.6437 3.4892 11 6 2.3209 2.2395 4.8901 12 1 2.5722 1.1838 4.9912 13 6 0.8762 2.4655 5.3403 14 6 3.2628 3.0736 5.7607 15 6 4.7152 2.5632 5.7676 16 7 4.6945 2.8317 7.2209 17 6 5.6538 3.1008 8.1604 18 1 5.3705 3.2667 9.1893 19 6 6.9903 3.1605 7.7901 20 7 7.3355 2.9580 6.5363 21 14 8.2988 3.5283 9.0714 22 1 7.6552 3.7160 10.3966 23 1 9.2556 2.3947 9.1414 24 1 9.0260 4.7672 8.6949 25 6 3.2253 2.6956 7.2526 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0146 4.1939 -1.2978 32 1 2.7799 3.5348 3.2715 33 1 0.7691 2.1644 6.3824 34 1 0.2052 1.8713 4.7200 35 1 0.6250 3.5214 5.2391 36 1 3.1748 4.1444 5.5770 37 1 4.8108 1.5067 5.5173 38 1 5.4063 3.1975 5.2124 39 1 8.2694 2.9994 6.2777 40 1 2.7290 3.4353 7.8809 41 1 2.8804 1.6787 7.4396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969411331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:00 Heat of formation + Delta-G solvation = 6.170279 kcal Electronic energy + Delta-G solvation = -23483.324394 eV Core-core repulsion = 19979.584174 eV Total energy + Delta-G solvation = -3503.740219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.43822 -40.95103 -39.62147 -36.31925 -35.85578 -35.02791 -34.15308 -31.90032 -30.14083 -29.35451 -26.76245 -25.92704 -25.35235 -24.54372 -23.17943 -22.09831 -21.51454 -20.72830 -19.06035 -18.74004 -17.84896 -17.43245 -17.16683 -16.90528 -16.09361 -15.84034 -15.72617 -15.68685 -15.19526 -14.75862 -14.63767 -14.44418 -14.08175 -13.56014 -13.45016 -13.27939 -13.10255 -12.92546 -12.73989 -12.65960 -12.54976 -12.40144 -12.17594 -11.98001 -11.76771 -11.73127 -11.50065 -11.29114 -11.04412 -10.88249 -10.18312 -9.86051 -8.93099 -7.91005 -5.25113 0.06002 1.08027 1.44445 1.46000 1.56347 1.57317 2.12688 2.26807 2.46747 3.12443 3.29808 3.37270 3.57073 3.69665 3.83630 3.93778 4.10041 4.25680 4.28411 4.32167 4.47028 4.57112 4.58378 4.73357 4.79103 4.81950 4.85395 4.95774 4.99914 5.06597 5.12904 5.21473 5.24825 5.27004 5.32858 5.46031 5.54515 5.64562 5.92374 6.33108 6.62692 6.90534 7.12753 7.60122 8.55993 9.26132 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.003418 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.853544 B = 8189.544935 C = 8824.127347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.046 3.954 4 O -0.197 6.197 5 C 0.195 3.805 6 N -0.497 5.497 7 C -0.103 4.103 8 C 0.596 3.404 9 O -0.561 6.561 10 N -0.698 5.698 11 C 0.160 3.840 12 H 0.067 0.933 13 C -0.148 4.148 14 C -0.111 4.111 15 C 0.168 3.832 16 N -0.644 5.644 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.956 5.956 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.291 1.291 25 C 0.133 3.867 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.305 0.695 32 H 0.411 0.589 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.005 0.995 38 H 0.038 0.962 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.511 -0.609 -16.815 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.011 4.011 4 O -0.084 6.084 5 C -0.034 4.034 6 N -0.225 5.225 7 C -0.221 4.221 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.348 5.348 11 C 0.055 3.945 12 H 0.085 0.915 13 C -0.206 4.206 14 C -0.131 4.131 15 C 0.042 3.958 16 N -0.371 5.371 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.264 4.264 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.218 1.218 25 C 0.008 3.992 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.319 0.681 32 H 0.247 0.753 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.324 -0.816 -16.066 22.217 hybrid contribution 1.359 0.060 0.129 1.367 sum -13.965 -0.756 -15.937 21.203 Atomic orbital electron populations 1.21659 0.92115 1.03824 1.01843 1.20457 0.97817 0.84471 1.05730 1.24083 0.97731 0.96117 0.83195 1.84407 1.63705 1.24635 1.35608 1.29167 0.96246 0.87141 0.90814 1.70729 1.18609 1.21179 1.12019 1.21436 1.12661 0.92769 0.95267 1.16984 0.77060 0.84233 0.83429 1.90736 1.48681 1.20841 1.83792 1.45859 1.65933 1.17300 1.05678 1.20938 0.96152 0.98538 0.78908 0.91466 1.22045 0.93788 1.02608 1.02170 1.23445 0.94248 1.00071 0.95344 1.22157 0.93125 0.95371 0.85145 1.46424 1.02754 1.81835 1.06073 1.19523 0.86934 1.39581 0.90250 0.89540 1.25681 0.99119 1.02981 0.98572 1.70043 1.16027 1.57277 1.17166 0.84977 0.78772 0.76777 0.78601 1.18676 1.22142 1.21755 1.22676 0.84094 0.98824 0.93620 0.91515 0.89408 0.93879 0.87313 0.88318 0.68070 0.75311 0.90185 0.92833 0.91184 0.88239 0.97767 0.94392 0.94396 0.91569 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 71.98 0.71 -1.51 16 2 C -0.05 -0.90 5.93 29.85 0.18 -0.72 16 3 C 0.05 1.06 6.69 25.18 0.17 1.23 16 4 O -0.20 -3.66 10.73 0.28 0.00 -3.66 16 5 C 0.19 3.12 13.19 130.52 1.72 4.84 16 6 N -0.50 -12.34 11.06 -305.14 -3.37 -15.72 16 7 C -0.10 -2.89 6.99 40.41 0.28 -2.60 16 8 C 0.60 19.26 7.78 86.66 0.67 19.94 16 9 O -0.56 -19.89 14.46 -4.05 -0.06 -19.95 16 10 N -0.70 -21.76 5.07 -445.80 -2.26 -24.02 16 11 C 0.16 5.10 2.38 44.99 0.11 5.21 16 12 H 0.07 2.47 7.41 -2.39 -0.02 2.46 16 13 C -0.15 -3.80 9.31 71.98 0.67 -3.12 16 14 C -0.11 -4.11 3.47 -10.13 -0.04 -4.14 16 15 C 0.17 8.35 7.08 86.44 0.61 8.97 16 16 N -0.64 -34.06 3.70 -716.08 -2.65 -36.71 16 17 C -0.23 -13.51 10.70 84.03 0.90 -12.61 16 18 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 20 N -0.96 -59.75 11.39 21.65 0.25 -59.51 16 21 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.13 5.28 7.64 86.49 0.66 5.94 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.31 6.48 -2.39 -0.02 2.30 16 31 H 0.30 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.41 12.21 8.33 -92.71 -0.77 11.44 16 33 H 0.08 1.88 7.52 -2.39 -0.02 1.86 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.00 0.24 7.99 -2.39 -0.02 0.22 16 38 H 0.04 2.12 7.17 -2.39 -0.02 2.11 16 39 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -76.58 346.18 1.32 -75.26 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.27 Total: 17.78 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 7.12 Total: 17.70 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -8.04 Total: -135.95 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -76.58 1.32 -75.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969411331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.429 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds