Wall clock time and date at job start Tue Mar 31 2020 03:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47375 * 2 1 4 4 O 1.34261 * 126.52545 * 270.02896 * 3 2 1 5 5 C 1.34048 * 108.22195 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.24583 * 359.72295 * 5 4 3 7 7 C 1.36062 * 108.47970 * 0.43870 * 6 5 4 8 8 C 1.47415 * 126.45092 * 179.82313 * 7 6 5 9 9 O 1.21616 * 120.00054 * 179.69367 * 8 7 6 10 10 N 1.34780 * 119.99847 * 359.69664 * 8 7 6 11 11 C 1.46496 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.09003 * 109.47144 * 299.99970 * 1 2 3 27 27 H 1.09005 * 109.47255 * 60.00092 * 1 2 3 28 28 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00030 * 2 1 3 30 30 H 1.08996 * 109.47072 * 119.99854 * 2 1 3 31 31 H 1.08007 * 125.37115 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47419 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 35 35 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 36 36 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 37 37 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 38 38 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 39 39 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 40 40 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 41 41 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2983 2.1744 -1.0789 5 6 2.7222 3.3743 -0.6579 6 7 2.7240 3.3964 0.6412 7 6 2.3023 2.1845 1.0937 8 6 2.1589 1.7773 2.5032 9 8 1.7643 0.6598 2.7762 10 7 2.4650 2.6436 3.4894 11 6 2.3220 2.2391 4.8901 12 1 1.4625 1.5764 4.9910 13 6 3.5869 1.5058 5.3411 14 6 2.1141 3.4801 5.7605 15 6 1.9502 3.1792 7.2568 16 7 0.9015 4.2095 7.2960 17 6 0.3845 5.0547 8.2413 18 1 0.8532 5.1313 9.2113 19 6 -0.7416 5.8132 7.9527 20 7 -1.3038 6.5411 8.8943 21 14 -1.4593 5.8007 6.2282 22 1 -2.7186 6.5874 6.2104 23 1 -0.4858 6.4032 5.2825 24 1 -1.7442 4.4013 5.8207 25 6 0.6476 3.9277 5.8751 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0122 4.1948 -1.2977 32 1 2.7801 3.5347 3.2716 33 1 3.4806 1.2053 6.3834 34 1 3.7350 0.6218 4.7209 35 1 4.4464 2.1686 5.2402 36 1 2.8146 4.2857 5.5405 37 1 2.8295 3.4319 7.8493 38 1 1.5795 2.1745 7.4604 39 1 -0.9772 6.4907 9.8062 40 1 -0.0665 3.1203 5.7135 41 1 0.4171 4.8183 5.2905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969411332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:05 Heat of formation + Delta-G solvation = 40.171809 kcal Electronic energy + Delta-G solvation = -23634.942010 eV Core-core repulsion = 20132.676208 eV Total energy + Delta-G solvation = -3502.265802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.69730 -39.86631 -38.51276 -35.24870 -35.02804 -34.25202 -32.40068 -30.82691 -29.35004 -27.73035 -25.59848 -24.88625 -23.96344 -23.48708 -21.92763 -20.85632 -20.47716 -19.49288 -18.15373 -17.45174 -17.08849 -16.40592 -16.28204 -15.43974 -15.20673 -14.86241 -14.77931 -14.24132 -13.85163 -13.73353 -13.63840 -13.14388 -12.96178 -12.87889 -12.31764 -12.02524 -11.88318 -11.81693 -11.61588 -11.50689 -11.44165 -10.98108 -10.91220 -10.64238 -10.33079 -10.28986 -9.99497 -9.30181 -9.16347 -9.11336 -8.88401 -8.85834 -7.14170 -6.27571 -3.21393 0.87621 1.83565 2.28548 3.10736 3.23765 3.43491 3.47103 3.66823 3.80912 4.30622 4.58089 4.61684 4.72614 4.79730 4.91938 4.94369 5.02200 5.12648 5.27362 5.45550 5.50080 5.51018 5.57269 5.59527 5.76725 5.78642 5.85386 5.90898 5.95540 6.02783 6.17989 6.25695 6.29308 6.33277 6.41560 6.59988 6.93845 7.14073 7.15833 7.58696 8.17095 8.25493 8.99638 9.52070 10.39002 11.22523 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.003978 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.010544 B = 7036.589427 C = 7557.683125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.044 3.956 4 O -0.200 6.200 5 C 0.173 3.827 6 N -0.462 5.462 7 C -0.073 4.073 8 C 0.601 3.399 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.152 3.848 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.140 4.140 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.304 4.304 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.935 5.935 21 Si 1.069 2.931 22 H -0.295 1.295 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.103 3.897 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.255 0.745 32 H 0.408 0.592 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -11.873 -21.656 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.013 4.013 4 O -0.087 6.087 5 C -0.056 4.056 6 N -0.191 5.191 7 C -0.193 4.193 8 C 0.387 3.613 9 O -0.414 6.414 10 N -0.352 5.352 11 C 0.047 3.953 12 H 0.110 0.890 13 C -0.216 4.216 14 C -0.160 4.160 15 C 0.008 3.992 16 N -0.357 5.357 17 C -0.430 4.430 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.577 5.577 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.221 1.221 24 H -0.214 1.214 25 C -0.023 4.023 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.270 0.730 32 H 0.244 0.756 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.648 -11.294 -21.799 26.030 hybrid contribution 1.240 -0.469 0.364 1.375 sum 9.888 -11.764 -21.435 26.375 Atomic orbital electron populations 1.21715 0.92953 1.02983 1.02614 1.20394 0.97203 0.85335 1.05360 1.23837 0.98502 0.95617 0.83342 1.84375 1.63704 1.24244 1.36338 1.28016 0.99309 0.87011 0.91251 1.70753 1.17077 1.21048 1.10179 1.21566 1.10634 0.91361 0.95768 1.16698 0.77442 0.84683 0.82513 1.90774 1.47380 1.20067 1.83195 1.45928 1.66208 1.17099 1.05916 1.21084 0.99107 0.96505 0.78602 0.89019 1.22122 0.97389 1.00232 1.01871 1.23566 0.99278 0.96527 0.96605 1.22255 0.92565 0.92861 0.91528 1.45964 1.42407 1.40163 1.07166 1.20166 1.09971 1.18229 0.94600 0.89910 1.25694 0.93838 0.96677 1.06075 1.70912 1.42529 1.42460 1.01839 0.83730 0.75578 0.75777 0.74731 1.22232 1.22119 1.21432 1.22832 0.93549 0.98257 0.87636 0.91559 0.92656 0.90995 0.89853 0.86402 0.72958 0.75643 0.91120 0.92498 0.92506 0.88318 0.93485 0.94269 0.92943 0.93755 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.41 5.93 -27.88 -0.17 -0.57 16 3 C 0.04 0.48 6.69 -35.08 -0.23 0.24 16 4 O -0.20 -1.89 10.73 6.51 0.07 -1.82 16 5 C 0.17 1.42 13.19 51.96 0.69 2.11 16 6 N -0.46 -5.41 11.06 -11.48 -0.13 -5.54 16 7 C -0.07 -0.94 6.99 -83.02 -0.58 -1.52 16 8 C 0.60 8.69 7.78 -12.52 -0.10 8.60 16 9 O -0.54 -8.53 14.47 5.26 0.08 -8.45 16 10 N -0.70 -9.78 5.07 -54.88 -0.28 -10.06 16 11 C 0.15 2.21 2.47 -67.93 -0.17 2.04 16 12 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 13 C -0.16 -1.98 9.29 37.16 0.35 -1.63 16 14 C -0.14 -2.38 3.67 -89.96 -0.33 -2.71 16 15 C 0.13 2.63 7.33 -8.50 -0.06 2.57 16 16 N -0.63 -15.78 3.69 -184.57 -0.68 -16.46 16 17 C -0.30 -8.94 11.08 -15.06 -0.17 -9.11 16 18 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 19 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 20 N -0.94 -30.08 13.70 55.49 0.76 -29.31 16 21 Si 1.07 27.67 25.16 -169.99 -4.28 23.39 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.29 -7.18 6.51 56.52 0.37 -6.81 16 24 H -0.29 -7.04 6.21 56.52 0.35 -6.69 16 25 C 0.10 2.22 5.27 -8.36 -0.04 2.18 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.19 6.48 -51.93 -0.34 0.85 16 31 H 0.25 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.41 5.34 8.33 -40.82 -0.34 5.00 16 33 H 0.07 0.84 7.48 -51.93 -0.39 0.46 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 40 H 0.04 0.97 7.44 -51.93 -0.39 0.58 16 41 H 0.05 1.16 4.73 -51.93 -0.25 0.91 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -35.38 338.67 -5.86 -41.25 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.96 Total: 1.43 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.55 Total: 0.47 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.33 Total: -61.37 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.15 Total: -10.27 kcal Atomic # 14 Polarization: 27.67 SS G_CDS: -4.28 Total: 23.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.38 -5.86 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969411332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.419 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds