Wall clock time and date at job start Tue Mar 31 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47375 * 2 1 4 4 O 1.34261 * 126.52545 * 270.02896 * 3 2 1 5 5 C 1.34048 * 108.22195 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.24583 * 359.72295 * 5 4 3 7 7 C 1.36062 * 108.47970 * 0.43870 * 6 5 4 8 8 C 1.47415 * 126.45092 * 179.82313 * 7 6 5 9 9 O 1.21616 * 120.00054 * 179.69367 * 8 7 6 10 10 N 1.34780 * 119.99847 * 359.69664 * 8 7 6 11 11 C 1.46496 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.09003 * 109.47144 * 299.99970 * 1 2 3 27 27 H 1.09005 * 109.47255 * 60.00092 * 1 2 3 28 28 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00030 * 2 1 3 30 30 H 1.08996 * 109.47072 * 119.99854 * 2 1 3 31 31 H 1.08007 * 125.37115 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47419 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 35 35 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 36 36 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 37 37 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 38 38 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 39 39 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 40 40 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 41 41 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2983 2.1744 -1.0789 5 6 2.7222 3.3743 -0.6579 6 7 2.7240 3.3964 0.6412 7 6 2.3023 2.1845 1.0937 8 6 2.1589 1.7773 2.5032 9 8 1.7643 0.6598 2.7762 10 7 2.4650 2.6436 3.4894 11 6 2.3220 2.2391 4.8901 12 1 1.4625 1.5764 4.9910 13 6 3.5869 1.5058 5.3411 14 6 2.1141 3.4801 5.7605 15 6 1.9502 3.1792 7.2568 16 7 0.9015 4.2095 7.2960 17 6 0.3845 5.0547 8.2413 18 1 0.8532 5.1313 9.2113 19 6 -0.7416 5.8132 7.9527 20 7 -1.3038 6.5411 8.8943 21 14 -1.4593 5.8007 6.2282 22 1 -2.7186 6.5874 6.2104 23 1 -0.4858 6.4032 5.2825 24 1 -1.7442 4.4013 5.8207 25 6 0.6476 3.9277 5.8751 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0122 4.1948 -1.2977 32 1 2.7801 3.5347 3.2716 33 1 3.4806 1.2053 6.3834 34 1 3.7350 0.6218 4.7209 35 1 4.4464 2.1686 5.2402 36 1 2.8146 4.2857 5.5405 37 1 2.8295 3.4319 7.8493 38 1 1.5795 2.1745 7.4604 39 1 -0.9772 6.4907 9.8062 40 1 -0.0665 3.1203 5.7135 41 1 0.4171 4.8183 5.2905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969411332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:04 Heat of formation + Delta-G solvation = 11.798146 kcal Electronic energy + Delta-G solvation = -23636.172384 eV Core-core repulsion = 20132.676208 eV Total energy + Delta-G solvation = -3503.496177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.44292 -41.13398 -39.96654 -36.44138 -35.86964 -35.04586 -34.51936 -32.09506 -30.18990 -29.48981 -27.14299 -26.00133 -25.12154 -24.52100 -23.06759 -22.07330 -21.56728 -20.95221 -19.57976 -19.13991 -17.85394 -17.59320 -17.24588 -17.06330 -16.11893 -16.02706 -15.76630 -15.69844 -15.32180 -15.16902 -14.76393 -14.50742 -14.30781 -13.69620 -13.55980 -13.33153 -13.25779 -13.14926 -12.69011 -12.56309 -12.39973 -12.38970 -12.21036 -12.13019 -11.76921 -11.72609 -11.34979 -11.12524 -11.08080 -10.87191 -10.20899 -9.88110 -9.25403 -8.64068 -5.50200 0.05343 1.07102 1.34379 1.43163 1.57153 1.62393 2.09196 2.24728 2.49199 2.95709 3.10937 3.15680 3.44872 3.57097 3.77895 3.85421 4.10039 4.17693 4.24623 4.31272 4.35501 4.42705 4.55406 4.56831 4.63745 4.66335 4.77578 4.80090 4.85303 4.94490 5.00026 5.11972 5.16785 5.21288 5.26170 5.28534 5.38705 5.52042 5.92732 6.31258 6.61205 6.67607 7.10710 7.29885 8.25071 8.87788 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.003978 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.010544 B = 7036.589427 C = 7557.683125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.046 3.954 4 O -0.198 6.198 5 C 0.195 3.805 6 N -0.496 5.496 7 C -0.102 4.102 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.700 5.700 11 C 0.161 3.839 12 H 0.077 0.923 13 C -0.150 4.150 14 C -0.106 4.106 15 C 0.133 3.867 16 N -0.662 5.662 17 C -0.291 4.291 18 H 0.055 0.945 19 C -0.083 4.083 20 N -0.971 5.971 21 Si 1.106 2.894 22 H -0.302 1.302 23 H -0.271 1.271 24 H -0.269 1.269 25 C 0.093 3.907 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.303 0.697 32 H 0.413 0.587 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.248 0.752 40 H 0.045 0.955 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.456 -12.831 -24.871 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.011 4.011 4 O -0.084 6.084 5 C -0.033 4.033 6 N -0.224 5.224 7 C -0.221 4.221 8 C 0.385 3.615 9 O -0.437 6.437 10 N -0.350 5.350 11 C 0.056 3.944 12 H 0.095 0.905 13 C -0.209 4.209 14 C -0.125 4.125 15 C 0.008 3.992 16 N -0.391 5.391 17 C -0.418 4.418 18 H 0.073 0.927 19 C -0.275 4.275 20 N -0.617 5.617 21 Si 0.933 3.067 22 H -0.230 1.230 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.032 4.032 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.318 0.682 32 H 0.249 0.751 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.111 -12.286 -25.023 29.653 hybrid contribution 0.895 -0.213 1.342 1.627 sum 11.006 -12.499 -23.681 28.950 Atomic orbital electron populations 1.21686 0.92779 1.03774 1.01632 1.20444 0.97229 0.84582 1.05990 1.24096 0.97629 0.96177 0.83243 1.84413 1.63681 1.24627 1.35690 1.29154 0.96219 0.87120 0.90844 1.70721 1.18882 1.20883 1.11944 1.21422 1.12802 0.92623 0.95245 1.16951 0.76859 0.84379 0.83348 1.90755 1.48321 1.20910 1.83746 1.45857 1.66298 1.17390 1.05504 1.20879 0.99811 0.94917 0.78819 0.90495 1.22055 0.96518 1.00129 1.02158 1.23258 0.96274 0.97660 0.95344 1.22476 0.91314 0.92015 0.93435 1.46103 1.43674 1.41177 1.08101 1.20076 1.09130 1.18246 0.94387 0.92722 1.26929 0.94845 0.96929 1.08759 1.71002 1.44189 1.44785 1.01692 0.83272 0.75087 0.76792 0.71526 1.23025 1.19799 1.19503 1.23018 0.96648 0.98024 0.85486 0.94279 0.91756 0.89390 0.87129 0.87805 0.68178 0.75076 0.90384 0.92600 0.91183 0.86970 0.92377 0.92805 0.94327 0.93720 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 71.98 0.71 -1.53 16 2 C -0.05 -0.73 5.93 29.85 0.18 -0.56 16 3 C 0.05 0.92 6.69 25.19 0.17 1.09 16 4 O -0.20 -3.14 10.73 0.36 0.00 -3.14 16 5 C 0.20 2.55 13.19 130.52 1.72 4.27 16 6 N -0.50 -10.51 11.06 -305.15 -3.37 -13.89 16 7 C -0.10 -2.49 6.99 40.41 0.28 -2.20 16 8 C 0.60 16.69 7.78 86.66 0.67 17.36 16 9 O -0.56 -17.45 14.47 -4.08 -0.06 -17.51 16 10 N -0.70 -18.35 5.07 -445.80 -2.26 -20.61 16 11 C 0.16 4.36 2.47 44.99 0.11 4.48 16 12 H 0.08 2.37 7.32 -2.39 -0.02 2.35 16 13 C -0.15 -3.38 9.29 71.98 0.67 -2.71 16 14 C -0.11 -3.36 3.67 -10.37 -0.04 -3.39 16 15 C 0.13 4.94 7.33 83.18 0.61 5.55 16 16 N -0.66 -32.69 3.69 -737.86 -2.72 -35.41 16 17 C -0.29 -17.39 11.08 84.03 0.93 -16.46 16 18 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 19 C -0.08 -5.09 5.50 84.86 0.47 -4.63 16 20 N -0.97 -64.31 13.70 21.65 0.30 -64.02 16 21 Si 1.11 55.95 25.16 68.60 1.73 57.68 16 22 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 23 H -0.27 -12.61 6.51 99.48 0.65 -11.97 16 24 H -0.27 -12.65 6.21 99.48 0.62 -12.03 16 25 C 0.09 3.87 5.27 83.27 0.44 4.31 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 2.01 6.48 -2.39 -0.02 2.00 16 31 H 0.30 0.26 8.06 -2.91 -0.02 0.24 16 32 H 0.41 10.01 8.33 -92.71 -0.77 9.24 16 33 H 0.08 1.64 7.48 -2.39 -0.02 1.63 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.25 16.38 8.73 -92.71 -0.81 15.57 16 40 H 0.05 1.88 7.44 -2.39 -0.02 1.87 16 41 H 0.05 1.94 4.73 -2.39 -0.01 1.93 16 Total: -1.00 -78.75 338.67 0.62 -78.13 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.09 Total: 13.21 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.93 Total: 5.57 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -8.06 Total: -133.93 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 55.95 SS G_CDS: 1.73 Total: 57.68 kcal Total: -78.75 0.62 -78.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969411332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.924 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds