Wall clock time and date at job start Tue Mar 31 2020 03:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47450 * 2 1 4 4 N 1.30015 * 127.33726 * 89.97146 * 3 2 1 5 5 O 1.20661 * 112.29847 * 180.02562 * 4 3 2 6 6 C 1.33484 * 113.15999 * 0.02562 * 5 4 3 7 7 C 1.37359 * 106.34176 * 0.25549 * 6 5 4 8 8 C 1.47402 * 128.56234 * 179.70078 * 7 6 5 9 9 O 1.21610 * 119.99833 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00231 * 0.02760 * 8 7 6 11 11 C 1.46501 * 120.00062 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47278 * 34.99730 * 11 10 8 13 13 C 1.53011 * 109.46916 * 275.00221 * 11 10 8 14 14 C 1.52991 * 109.47349 * 154.99877 * 11 10 8 15 15 C 1.53940 * 113.74532 * 278.73890 * 14 11 10 16 16 N 1.47806 * 86.04045 * 222.08359 * 15 14 11 17 17 C 1.36939 * 134.45775 * 204.64557 * 16 15 14 18 18 H 1.08006 * 119.99829 * 173.34725 * 17 16 15 19 19 C 1.38807 * 119.99910 * 353.34176 * 17 16 15 20 20 N 1.31611 * 120.00153 * 5.07129 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 185.06325 * 19 17 16 22 22 H 1.48504 * 109.46956 * 94.99095 * 21 19 17 23 23 H 1.48494 * 109.47245 * 214.99391 * 21 19 17 24 24 H 1.48497 * 109.46967 * 334.99319 * 21 19 17 25 25 C 1.47585 * 91.05168 * 24.54764 * 16 15 14 26 26 H 1.08996 * 109.46792 * 59.99931 * 1 2 3 27 27 H 1.08994 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46695 * 299.99903 * 1 2 3 29 29 H 1.08996 * 109.47241 * 239.99380 * 2 1 3 30 30 H 1.09006 * 109.47213 * 119.99760 * 2 1 3 31 31 H 1.08001 * 126.82929 * 179.97438 * 6 5 4 32 32 H 0.97000 * 120.00245 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47104 * 60.00174 * 13 11 10 34 34 H 1.08998 * 109.46798 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.46745 * 299.99835 * 13 11 10 36 36 H 1.09003 * 112.94407 * 50.33954 * 14 11 10 37 37 H 1.08998 * 113.76958 * 336.35283 * 15 14 11 38 38 H 1.08999 * 113.76885 * 107.74197 * 15 14 11 39 39 H 0.97006 * 120.00167 * 179.97438 * 20 19 17 40 40 H 1.08996 * 113.76915 * 221.15109 * 25 16 15 41 41 H 1.08998 * 113.86962 * 89.76743 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2948 2.1644 1.0337 5 8 2.6830 3.2631 0.7206 6 6 2.7455 3.4410 -0.6008 7 6 2.3233 2.2641 -1.1696 8 6 2.1954 1.9285 -2.5992 9 8 1.8011 0.8274 -2.9323 10 7 2.5155 2.8419 -3.5371 11 6 2.3878 2.5085 -4.9580 12 1 1.5278 1.8545 -5.1019 13 6 3.6561 1.7946 -5.4303 14 6 2.1935 3.7920 -5.7676 15 6 0.7451 4.3134 -5.7647 16 7 0.9470 4.5810 -7.2043 17 6 0.3835 5.4416 -8.1081 18 1 0.7891 5.5182 -9.1062 19 6 -0.7090 6.2155 -7.7416 20 7 -1.1412 6.1969 -6.4986 21 14 -1.5656 7.2835 -9.0125 22 1 -2.7251 6.5472 -9.5772 23 1 -2.0397 8.5349 -8.3689 24 1 -0.6130 7.6171 -10.1017 25 6 2.0010 3.5504 -7.2758 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.0607 4.3343 -1.1196 32 1 2.8297 3.7203 -3.2715 33 1 3.7944 0.8801 -4.8535 34 1 3.5613 1.5469 -6.4875 35 1 4.5161 2.4486 -5.2864 36 1 2.9356 4.5564 -5.5369 37 1 0.0013 3.5431 -5.5611 38 1 0.6030 5.2126 -5.1652 39 1 -1.9045 6.7380 -6.2424 40 1 2.8598 3.8416 -7.8805 41 1 1.6288 2.5548 -7.5172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970388820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:25 Heat of formation + Delta-G solvation = 46.027963 kcal Electronic energy + Delta-G solvation = -23440.908510 eV Core-core repulsion = 19938.896649 eV Total energy + Delta-G solvation = -3502.011860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.94424 -40.96698 -39.59110 -36.44961 -35.97347 -34.28347 -33.45345 -32.24491 -31.40263 -29.33103 -26.81659 -26.06610 -25.50085 -25.05350 -22.91033 -21.97537 -21.38372 -20.77799 -19.11362 -18.71937 -18.70776 -17.57056 -17.34451 -16.88578 -16.22702 -15.81706 -15.70090 -15.41571 -15.13279 -14.82709 -14.66086 -14.16951 -14.08135 -13.65122 -13.42229 -13.26982 -13.07335 -12.89057 -12.75655 -12.65488 -12.55638 -12.49681 -11.98297 -11.92553 -11.72041 -11.50568 -11.26046 -11.04855 -10.97380 -10.86138 -10.77798 -10.04256 -8.89502 -7.91860 -5.23651 0.10544 0.73761 1.45607 1.47625 1.56150 1.88607 2.18905 2.31035 2.47890 2.98991 3.29103 3.30633 3.40903 3.73103 3.83420 3.95102 4.03695 4.22443 4.30430 4.33032 4.35473 4.51792 4.60218 4.63188 4.77544 4.84515 4.86328 4.89721 4.93212 5.04693 5.10860 5.14668 5.24133 5.27458 5.37515 5.47372 5.57493 5.68487 5.94574 6.53228 6.92731 7.17757 7.21827 7.61740 8.58084 9.25814 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.003430 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.192826 B = 8161.651247 C = 8617.394309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C 0.058 3.942 4 N -0.378 5.378 5 O 0.097 5.903 6 C 0.030 3.970 7 C -0.280 4.280 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.162 3.838 12 H 0.061 0.939 13 C -0.150 4.150 14 C -0.107 4.107 15 C 0.170 3.830 16 N -0.645 5.645 17 C -0.236 4.236 18 H 0.085 0.915 19 C -0.065 4.065 20 N -0.952 5.952 21 Si 0.974 3.026 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.264 1.264 25 C 0.129 3.871 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.274 0.726 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.002 0.998 38 H 0.040 0.960 39 H 0.248 0.752 40 H 0.066 0.934 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -7.445 12.111 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.086 5.086 5 O 0.039 5.961 6 C -0.052 4.052 7 C -0.287 4.287 8 C 0.382 3.618 9 O -0.448 6.448 10 N -0.352 5.352 11 C 0.057 3.943 12 H 0.079 0.921 13 C -0.208 4.208 14 C -0.127 4.127 15 C 0.044 3.956 16 N -0.372 5.372 17 C -0.364 4.364 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.802 3.198 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.189 1.189 25 C 0.003 3.997 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.290 0.710 32 H 0.250 0.750 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.019 0.981 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.501 -8.128 13.051 19.201 hybrid contribution -1.059 0.900 -1.403 1.975 sum 10.442 -7.228 11.648 17.233 Atomic orbital electron populations 1.21622 0.93452 1.03262 1.01237 1.20053 0.96872 0.87107 1.04418 1.25160 0.99055 0.99512 0.86742 1.73667 1.17769 0.93205 1.23965 1.84545 1.61613 1.26009 1.23969 1.27258 0.94804 1.00129 0.83009 1.22307 1.14837 0.96807 0.94793 1.17014 0.76722 0.84281 0.83736 1.90762 1.47972 1.23508 1.82518 1.45745 1.66799 1.16889 1.05725 1.20860 0.99092 0.95603 0.78762 0.92113 1.22055 0.96719 1.00149 1.01870 1.23462 0.97773 0.96337 0.95124 1.22130 0.92310 0.95802 0.85335 1.46420 1.43844 1.39175 1.07733 1.19455 1.09075 1.13992 0.93883 0.89736 1.25615 0.99189 1.02580 0.98467 1.70005 1.27919 1.44822 1.17387 0.85125 0.78600 0.77534 0.78517 1.21918 1.22039 1.18890 1.22696 0.91160 0.91618 0.94179 0.94146 0.89836 0.92596 0.89207 0.88673 0.71015 0.74961 0.93164 0.90770 0.90438 0.87061 0.98051 0.94127 0.94334 0.91604 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.89 71.98 0.71 -2.26 16 2 C -0.05 -1.03 6.19 29.85 0.18 -0.84 16 3 C 0.06 1.41 6.84 45.16 0.31 1.72 16 4 N -0.38 -9.06 12.01 -44.78 -0.54 -9.59 16 5 O 0.10 1.86 11.06 77.06 0.85 2.71 16 6 C 0.03 0.44 11.85 67.61 0.80 1.24 16 7 C -0.28 -6.32 6.47 -18.74 -0.12 -6.44 16 8 C 0.60 16.02 7.78 86.66 0.67 16.69 16 9 O -0.57 -19.37 15.37 -4.06 -0.06 -19.44 16 10 N -0.70 -16.08 5.07 -445.82 -2.26 -18.34 16 11 C 0.16 4.39 2.38 44.99 0.11 4.50 16 12 H 0.06 2.06 7.41 -2.39 -0.02 2.04 16 13 C -0.15 -3.28 9.31 71.99 0.67 -2.61 16 14 C -0.11 -3.40 3.47 -10.14 -0.04 -3.43 16 15 C 0.17 7.71 6.99 86.44 0.60 8.32 16 16 N -0.65 -32.14 3.70 -716.15 -2.65 -34.79 16 17 C -0.24 -13.04 10.70 84.03 0.90 -12.14 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 20 N -0.95 -57.13 11.51 21.65 0.25 -56.88 16 21 Si 0.97 45.30 29.56 68.60 2.03 47.33 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.13 4.73 7.64 86.49 0.66 5.39 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.09 2.17 7.13 -2.39 -0.02 2.15 16 30 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.27 1.00 7.68 -2.91 -0.02 0.98 16 32 H 0.41 6.67 7.79 -92.71 -0.72 5.95 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.56 7.51 -2.39 -0.02 1.55 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.00 0.08 7.99 -2.39 -0.02 0.06 16 38 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 39 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -75.18 346.86 3.87 -71.32 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.32 Total: 10.78 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.93 Total: 6.91 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.20 Total: -119.61 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.79 Total: -16.72 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.18 3.87 -71.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970388820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.344 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds