Wall clock time and date at job start Tue Mar 31 2020 03:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 O 1.33493 * 126.82936 * 270.03717 * 3 2 1 5 5 N 1.20658 * 113.15376 * 179.71177 * 4 3 2 6 6 C 1.30013 * 112.30531 * 0.43238 * 5 4 3 7 7 C 1.37363 * 126.82693 * 89.99846 * 3 2 1 8 8 C 1.47393 * 128.56797 * 0.03266 * 7 3 2 9 9 O 1.21611 * 120.00231 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00287 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00135 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47473 * 35.00051 * 11 10 8 13 13 C 1.53003 * 109.47100 * 274.99966 * 11 10 8 14 14 C 1.53000 * 109.47376 * 155.00441 * 11 10 8 15 15 C 1.53947 * 113.74041 * 278.74173 * 14 11 10 16 16 N 1.47806 * 86.03983 * 222.08259 * 15 14 11 17 17 C 1.36935 * 134.45780 * 204.65009 * 16 15 14 18 18 H 1.08005 * 119.99944 * 179.86772 * 17 16 15 19 19 C 1.38810 * 120.00048 * 359.85622 * 17 16 15 20 20 N 1.31615 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47203 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46859 * 120.00129 * 21 19 17 24 24 H 1.48504 * 109.47189 * 240.00092 * 21 19 17 25 25 C 1.47586 * 91.05147 * 24.54520 * 16 15 14 26 26 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47652 * 300.00132 * 1 2 3 28 28 H 1.09002 * 109.46595 * 60.00595 * 1 2 3 29 29 H 1.08995 * 109.47652 * 239.99867 * 2 1 3 30 30 H 1.09002 * 109.46595 * 119.99405 * 2 1 3 31 31 H 1.08002 * 127.33964 * 179.86433 * 6 5 4 32 32 H 0.97000 * 119.99814 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47188 * 60.00415 * 13 11 10 34 34 H 1.09007 * 109.46915 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47308 * 299.99981 * 13 11 10 36 36 H 1.09003 * 112.94709 * 50.32854 * 14 11 10 37 37 H 1.09001 * 113.76918 * 336.35068 * 15 14 11 38 38 H 1.09006 * 113.76976 * 107.74157 * 15 14 11 39 39 H 0.96998 * 120.00326 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.77134 * 221.15614 * 25 16 15 41 41 H 1.09003 * 113.86821 * 89.76833 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2984 2.1755 -1.0685 5 7 2.6840 3.2826 -0.7833 6 6 2.7540 3.4648 0.5021 7 6 2.3067 2.1971 1.0995 8 6 2.1834 1.8465 2.5258 9 8 1.7937 0.7407 2.8487 10 7 2.5026 2.7513 3.4723 11 6 2.3806 2.4026 4.8899 12 1 2.6356 1.3521 5.0290 13 6 0.9422 2.6438 5.3525 14 6 3.3334 3.2720 5.7129 15 6 4.7869 2.7648 5.7181 16 7 4.7872 3.0903 7.1598 17 6 5.7598 3.3981 8.0734 18 1 5.4915 3.6039 9.0991 19 6 7.0905 3.4453 7.6811 20 7 7.4174 3.1947 6.4311 21 14 8.4173 3.8644 8.9275 22 1 7.7933 4.1012 10.2540 23 1 9.3772 2.7357 9.0269 24 1 9.1362 5.0888 8.4924 25 6 3.3189 2.9532 7.2189 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0689 4.3582 1.0209 32 1 2.8131 3.6335 3.2148 33 1 0.2633 2.0245 4.7663 34 1 0.8514 2.3839 6.4072 35 1 0.6872 3.6944 5.2135 36 1 3.2402 4.3346 5.4883 37 1 4.8812 1.6994 5.5082 38 1 5.4682 3.3777 5.1279 39 1 8.3472 3.2281 6.1569 40 1 2.8304 3.7163 7.8248 41 1 2.9792 1.9438 7.4510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970517120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:07 Heat of formation + Delta-G solvation = 69.225767 kcal Electronic energy + Delta-G solvation = -23460.813073 eV Core-core repulsion = 19959.807145 eV Total energy + Delta-G solvation = -3501.005928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.05442 -39.75172 -38.07752 -35.17047 -34.56252 -33.81830 -32.20026 -30.84466 -30.01504 -27.54311 -25.50664 -24.62076 -24.18802 -23.85965 -22.10251 -20.80827 -20.43031 -19.15448 -17.93811 -17.75797 -16.83126 -16.47777 -16.07798 -15.02000 -14.93336 -14.78269 -14.60724 -13.99302 -13.82626 -13.75827 -13.43621 -13.09083 -12.80984 -12.47341 -12.16878 -12.06735 -11.75528 -11.69786 -11.35180 -11.31856 -11.12141 -10.93297 -10.74418 -10.55397 -10.38190 -10.08362 -9.82215 -9.78352 -9.60557 -9.43613 -8.85434 -8.81515 -6.88806 -5.77939 -3.10200 0.95145 1.66096 2.63458 3.21115 3.26861 3.37892 3.43234 3.45808 4.09412 4.14909 4.43829 4.46710 4.77765 4.94307 4.98338 5.06571 5.19796 5.24542 5.26337 5.45874 5.51358 5.60195 5.62457 5.64709 5.75675 5.83173 5.91460 5.95363 5.99886 6.21094 6.32569 6.37846 6.55030 6.62725 6.75760 7.21748 7.34222 7.54316 7.57316 7.96909 8.00719 8.24290 9.03545 9.69907 10.58777 11.39165 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.003393 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.877215 B = 8251.216300 C = 8895.243491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.049 3.951 4 O 0.090 5.910 5 N -0.357 5.357 6 C 0.024 3.976 7 C -0.259 4.259 8 C 0.597 3.403 9 O -0.537 6.537 10 N -0.707 5.707 11 C 0.152 3.848 12 H 0.090 0.910 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.170 3.830 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.131 3.869 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.201 0.799 32 H 0.399 0.601 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.044 0.956 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 -2.451 -12.890 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.016 4.016 4 O 0.030 5.970 5 N -0.062 5.062 6 C -0.159 4.159 7 C -0.266 4.266 8 C 0.383 3.617 9 O -0.415 6.415 10 N -0.356 5.356 11 C 0.047 3.953 12 H 0.108 0.892 13 C -0.217 4.217 14 C -0.167 4.167 15 C 0.045 3.955 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.004 3.996 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.218 0.782 32 H 0.233 0.767 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.274 -2.427 -13.588 19.856 hybrid contribution 1.056 0.510 1.326 1.770 sum -13.218 -1.917 -12.262 18.131 Atomic orbital electron populations 1.21703 0.92938 1.02995 1.02535 1.20394 0.97139 0.85530 1.05674 1.24908 0.95363 0.96127 0.85176 1.84567 1.61504 1.17485 1.33424 1.73650 1.16500 0.98472 1.17601 1.26427 1.00494 0.99382 0.89547 1.22187 1.13536 0.95283 0.95622 1.16759 0.77434 0.84513 0.82946 1.90771 1.47210 1.21373 1.82167 1.45886 1.66810 1.16417 1.06535 1.21143 0.95156 1.00854 0.78099 0.89219 1.22135 0.96256 1.01503 1.01766 1.23835 0.97554 0.99184 0.96162 1.22301 0.89841 0.96946 0.86420 1.46000 1.00598 1.80296 1.06999 1.19077 0.85821 1.39619 0.90515 0.90206 1.24780 0.96891 1.02175 0.96637 1.69822 1.16774 1.55094 1.15143 0.86060 0.81946 0.77612 0.80227 1.20457 1.21747 1.21713 1.22485 0.87134 0.97745 0.92226 0.90991 0.91755 0.92464 0.89266 0.86619 0.78168 0.76651 0.92722 0.91297 0.92716 0.89375 0.95593 0.91045 0.93723 0.93740 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.44 6.05 -27.88 -0.17 -0.61 16 3 C 0.05 0.54 6.80 -34.63 -0.24 0.31 16 4 O 0.09 1.04 11.06 18.65 0.21 1.25 16 5 N -0.36 -4.40 12.01 31.81 0.38 -4.01 16 6 C 0.02 0.27 11.95 -14.72 -0.18 0.09 16 7 C -0.26 -3.16 6.47 -102.89 -0.67 -3.82 16 8 C 0.60 8.32 7.78 -12.54 -0.10 8.23 16 9 O -0.54 -8.71 14.90 5.27 0.08 -8.64 16 10 N -0.71 -9.22 5.07 -54.89 -0.28 -9.50 16 11 C 0.15 2.22 2.38 -67.93 -0.16 2.06 16 12 H 0.09 1.52 7.41 -51.93 -0.39 1.13 16 13 C -0.16 -1.98 9.31 37.16 0.35 -1.64 16 14 C -0.15 -2.54 3.47 -89.69 -0.31 -2.85 16 15 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 16 N -0.61 -15.52 3.70 -177.69 -0.66 -16.17 16 17 C -0.22 -6.23 10.70 -15.06 -0.16 -6.40 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.13 2.55 7.64 -2.96 -0.02 2.53 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.12 1.20 6.78 -51.93 -0.35 0.84 16 31 H 0.20 1.58 7.88 -52.49 -0.41 1.17 16 32 H 0.40 4.37 7.97 -40.82 -0.33 4.05 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.83 7.52 -51.92 -0.39 0.44 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 38 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -32.95 346.12 -6.85 -39.79 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.00 Total: 0.91 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.40 Total: 0.68 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.08 Total: -56.31 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.28 Total: -7.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.95 -6.85 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970517120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.020 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds