Wall clock time and date at job start Tue Mar 31 2020 03:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 O 1.33493 * 126.82936 * 270.03717 * 3 2 1 5 5 N 1.20658 * 113.15376 * 179.71177 * 4 3 2 6 6 C 1.30013 * 112.30531 * 0.43238 * 5 4 3 7 7 C 1.37363 * 126.82693 * 89.99846 * 3 2 1 8 8 C 1.47393 * 128.56797 * 0.03266 * 7 3 2 9 9 O 1.21611 * 120.00231 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00287 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00135 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47473 * 35.00051 * 11 10 8 13 13 C 1.53003 * 109.47100 * 274.99966 * 11 10 8 14 14 C 1.53000 * 109.47376 * 155.00441 * 11 10 8 15 15 C 1.53947 * 113.74041 * 278.74173 * 14 11 10 16 16 N 1.47806 * 86.03983 * 222.08259 * 15 14 11 17 17 C 1.36935 * 134.45780 * 204.65009 * 16 15 14 18 18 H 1.08005 * 119.99944 * 179.86772 * 17 16 15 19 19 C 1.38810 * 120.00048 * 359.85622 * 17 16 15 20 20 N 1.31615 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47203 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46859 * 120.00129 * 21 19 17 24 24 H 1.48504 * 109.47189 * 240.00092 * 21 19 17 25 25 C 1.47586 * 91.05147 * 24.54520 * 16 15 14 26 26 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47652 * 300.00132 * 1 2 3 28 28 H 1.09002 * 109.46595 * 60.00595 * 1 2 3 29 29 H 1.08995 * 109.47652 * 239.99867 * 2 1 3 30 30 H 1.09002 * 109.46595 * 119.99405 * 2 1 3 31 31 H 1.08002 * 127.33964 * 179.86433 * 6 5 4 32 32 H 0.97000 * 119.99814 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47188 * 60.00415 * 13 11 10 34 34 H 1.09007 * 109.46915 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47308 * 299.99981 * 13 11 10 36 36 H 1.09003 * 112.94709 * 50.32854 * 14 11 10 37 37 H 1.09001 * 113.76918 * 336.35068 * 15 14 11 38 38 H 1.09006 * 113.76976 * 107.74157 * 15 14 11 39 39 H 0.96998 * 120.00326 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.77134 * 221.15614 * 25 16 15 41 41 H 1.09003 * 113.86821 * 89.76833 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2984 2.1755 -1.0685 5 7 2.6840 3.2826 -0.7833 6 6 2.7540 3.4648 0.5021 7 6 2.3067 2.1971 1.0995 8 6 2.1834 1.8465 2.5258 9 8 1.7937 0.7407 2.8487 10 7 2.5026 2.7513 3.4723 11 6 2.3806 2.4026 4.8899 12 1 2.6356 1.3521 5.0290 13 6 0.9422 2.6438 5.3525 14 6 3.3334 3.2720 5.7129 15 6 4.7869 2.7648 5.7181 16 7 4.7872 3.0903 7.1598 17 6 5.7598 3.3981 8.0734 18 1 5.4915 3.6039 9.0991 19 6 7.0905 3.4453 7.6811 20 7 7.4174 3.1947 6.4311 21 14 8.4173 3.8644 8.9275 22 1 7.7933 4.1012 10.2540 23 1 9.3772 2.7357 9.0269 24 1 9.1362 5.0888 8.4924 25 6 3.3189 2.9532 7.2189 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0689 4.3582 1.0209 32 1 2.8131 3.6335 3.2148 33 1 0.2633 2.0245 4.7663 34 1 0.8514 2.3839 6.4072 35 1 0.6872 3.6944 5.2135 36 1 3.2402 4.3346 5.4883 37 1 4.8812 1.6994 5.5082 38 1 5.4682 3.3777 5.1279 39 1 8.3472 3.2281 6.1569 40 1 2.8304 3.7163 7.8248 41 1 2.9792 1.9438 7.4510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970517120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:07 Heat of formation + Delta-G solvation = 47.708925 kcal Electronic energy + Delta-G solvation = -23461.746113 eV Core-core repulsion = 19959.807145 eV Total energy + Delta-G solvation = -3501.938968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.95077 -40.97242 -39.61329 -36.33204 -35.52434 -34.77545 -34.10666 -31.98626 -31.00516 -29.34369 -26.82132 -26.04524 -25.44009 -24.94287 -23.32038 -22.02127 -21.55045 -20.58374 -18.93899 -18.76780 -18.69230 -17.54345 -17.23681 -16.90589 -16.07700 -15.86535 -15.74668 -15.41150 -15.13542 -14.72851 -14.60316 -14.42280 -14.06173 -13.54015 -13.41943 -13.25141 -13.07882 -12.93094 -12.85955 -12.67888 -12.49866 -12.46067 -11.96879 -11.85128 -11.74359 -11.48187 -11.45586 -11.26784 -11.04588 -10.87163 -10.54252 -10.00986 -8.91296 -7.90707 -5.23866 0.02805 0.76989 1.45196 1.46170 1.56361 1.72785 2.15616 2.23158 2.47236 3.22723 3.30026 3.30989 3.40027 3.57815 3.75152 3.94968 4.02608 4.20617 4.28483 4.31973 4.39416 4.51684 4.61633 4.74556 4.76432 4.84013 4.85030 4.88667 4.99736 5.03624 5.10217 5.15230 5.26853 5.31614 5.36865 5.47927 5.57013 5.67815 5.94251 6.51553 6.92210 7.11878 7.17890 7.61335 8.57008 9.26237 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.003393 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.877215 B = 8251.216300 C = 8895.243491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.058 3.942 4 O 0.086 5.914 5 N -0.376 5.376 6 C 0.035 3.965 7 C -0.282 4.282 8 C 0.598 3.402 9 O -0.564 6.564 10 N -0.702 5.702 11 C 0.162 3.838 12 H 0.065 0.935 13 C -0.149 4.149 14 C -0.109 4.109 15 C 0.166 3.834 16 N -0.645 5.645 17 C -0.233 4.233 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.977 3.023 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.130 3.870 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.229 0.771 32 H 0.411 0.589 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.004 0.996 38 H 0.041 0.959 39 H 0.247 0.753 40 H 0.065 0.935 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 -1.743 -12.861 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.007 4.007 4 O 0.029 5.971 5 N -0.084 5.084 6 C -0.148 4.148 7 C -0.289 4.289 8 C 0.386 3.614 9 O -0.445 6.445 10 N -0.352 5.352 11 C 0.057 3.943 12 H 0.083 0.917 13 C -0.208 4.208 14 C -0.129 4.129 15 C 0.041 3.959 16 N -0.372 5.372 17 C -0.362 4.362 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.218 1.218 25 C 0.005 3.995 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.245 0.755 32 H 0.247 0.753 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.022 0.978 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.728 -1.710 -13.561 20.837 hybrid contribution 1.458 0.240 1.307 1.973 sum -14.270 -1.471 -12.253 18.866 Atomic orbital electron populations 1.21680 0.91920 1.04012 1.02058 1.20518 0.97887 0.84281 1.06157 1.25343 0.93793 0.96697 0.84844 1.84561 1.61613 1.17455 1.33423 1.73642 1.17607 0.98923 1.18227 1.26859 0.99112 0.99711 0.89128 1.22097 1.15430 0.96461 0.94909 1.16924 0.76824 0.84063 0.83632 1.90757 1.48544 1.22469 1.82700 1.45767 1.66699 1.16945 1.05812 1.20877 0.95977 0.98737 0.78708 0.91682 1.22052 0.93995 1.02701 1.02005 1.23446 0.93981 1.00179 0.95264 1.22196 0.93116 0.95246 0.85370 1.46440 1.02779 1.80363 1.07598 1.19494 0.86845 1.38518 0.91311 0.89737 1.25619 0.99117 1.02993 0.98434 1.70013 1.16600 1.56785 1.16944 0.85026 0.78950 0.76802 0.78657 1.18816 1.22275 1.21763 1.22688 0.83976 0.98834 0.93972 0.89280 0.93659 0.91412 0.86651 0.88187 0.75502 0.75271 0.92904 0.90608 0.90833 0.87646 0.97826 0.94039 0.94406 0.91690 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.05 -0.84 6.05 29.85 0.18 -0.66 16 3 C 0.06 1.24 6.80 25.48 0.17 1.41 16 4 O 0.09 1.92 11.06 76.99 0.85 2.77 16 5 N -0.38 -8.84 12.01 -54.18 -0.65 -9.49 16 6 C 0.03 0.71 11.95 87.29 1.04 1.76 16 7 C -0.28 -6.64 6.47 -18.74 -0.12 -6.76 16 8 C 0.60 16.36 7.78 86.65 0.67 17.04 16 9 O -0.56 -18.36 14.90 -4.07 -0.06 -18.42 16 10 N -0.70 -17.51 5.07 -445.83 -2.26 -19.77 16 11 C 0.16 4.54 2.38 44.99 0.11 4.64 16 12 H 0.06 2.19 7.41 -2.39 -0.02 2.18 16 13 C -0.15 -3.36 9.31 71.98 0.67 -2.69 16 14 C -0.11 -3.61 3.47 -10.13 -0.04 -3.64 16 15 C 0.17 7.74 7.08 86.44 0.61 8.36 16 16 N -0.65 -32.67 3.70 -716.08 -2.65 -35.32 16 17 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 18 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.95 -57.89 11.39 21.65 0.25 -57.64 16 21 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.13 4.88 7.64 86.48 0.66 5.55 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 2.05 6.78 -2.39 -0.02 2.03 16 31 H 0.23 3.09 7.88 -2.91 -0.02 3.07 16 32 H 0.41 8.28 7.97 -92.71 -0.74 7.54 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.62 7.52 -2.38 -0.02 1.60 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 38 H 0.04 2.16 7.17 -2.38 -0.02 2.15 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -72.31 346.12 3.85 -68.46 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.30 Total: 13.48 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.04 Total: 8.08 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -5.32 Total: -122.22 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.79 Total: -15.65 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.31 3.85 -68.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970517120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.167 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds