Wall clock time and date at job start Tue Mar 31 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47451 * 2 1 4 4 O 1.33499 * 126.82912 * 269.99939 * 3 2 1 5 5 N 1.20658 * 113.15916 * 179.97438 * 4 3 2 6 6 C 1.30017 * 112.30056 * 359.73584 * 5 4 3 7 7 C 1.37357 * 126.83151 * 89.99771 * 3 2 1 8 8 C 1.47398 * 128.56315 * 359.97101 * 7 3 2 9 9 O 1.21610 * 120.00072 * 359.97438 * 8 7 3 10 10 N 1.34780 * 119.99965 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47047 * 300.00315 * 1 2 3 28 28 H 1.08999 * 109.46822 * 59.99522 * 1 2 3 29 29 H 1.09009 * 109.47433 * 240.00038 * 2 1 3 30 30 H 1.08996 * 109.47244 * 120.00181 * 2 1 3 31 31 H 1.07998 * 127.33992 * 180.27330 * 6 5 4 32 32 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 34 34 H 1.08998 * 109.47419 * 179.97438 * 13 11 10 35 35 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 36 36 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 37 37 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 38 38 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 39 39 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 40 40 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 41 41 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1752 -1.0686 5 7 2.6896 3.2807 -0.7834 6 6 2.7490 3.4666 0.5020 7 6 2.3068 2.1971 1.0994 8 6 2.1823 1.8469 2.5258 9 8 1.7905 0.7418 2.8486 10 7 2.5018 2.7517 3.4722 11 6 2.3775 2.4038 4.8898 12 1 1.5194 1.7463 5.0287 13 6 3.6483 1.6883 5.3528 14 6 2.1815 3.6788 5.7125 15 6 2.0377 3.4381 7.2217 16 7 0.9897 4.4699 7.2337 17 6 0.4856 5.3527 8.1513 18 1 0.9673 5.4677 9.1110 19 6 -0.6442 6.0997 7.8476 20 7 -1.1936 6.8651 8.7667 21 14 -1.3850 6.0186 6.1347 22 1 -2.6443 6.8049 6.1024 23 1 -0.4242 6.5821 5.1527 24 1 -1.6755 4.6042 5.7875 25 6 0.7167 4.1317 5.8288 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0592 4.3616 1.0208 32 1 2.8140 3.6332 3.2147 33 1 4.5064 2.3460 5.2139 34 1 3.5560 1.4299 6.4077 35 1 3.7879 0.7801 4.7666 36 1 2.8791 4.4745 5.4511 37 1 2.9249 3.7138 7.7918 38 1 1.6696 2.4427 7.4704 39 1 -0.8548 6.8511 9.6755 40 1 0.0004 3.3189 5.7093 41 1 0.4786 4.9983 5.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970517121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:14 Heat of formation + Delta-G solvation = 77.608727 kcal Electronic energy + Delta-G solvation = -23612.854265 eV Core-core repulsion = 20112.211850 eV Total energy + Delta-G solvation = -3500.642416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.17022 -39.99411 -38.59701 -35.37968 -34.71817 -33.94454 -32.44695 -31.06582 -30.20371 -27.79312 -25.77608 -25.07924 -24.27587 -23.74474 -22.05272 -20.76606 -20.61235 -19.45072 -18.10385 -17.91578 -17.50752 -16.70090 -16.32474 -15.37029 -15.19484 -14.90955 -14.72908 -14.18799 -13.92347 -13.90195 -13.61444 -13.19569 -13.02806 -12.88704 -12.37975 -12.15654 -11.94316 -11.87839 -11.82109 -11.54931 -11.20618 -10.98684 -10.71508 -10.67114 -10.39249 -10.34583 -10.06683 -9.72746 -9.31246 -9.16592 -8.98314 -8.93057 -7.19467 -6.31964 -3.26243 0.82841 1.54018 2.51340 3.06157 3.09707 3.37185 3.42299 3.62315 3.96524 4.02840 4.34339 4.57054 4.61673 4.70337 4.83298 4.87718 4.92722 5.03197 5.09840 5.36841 5.38332 5.44260 5.51460 5.53068 5.55185 5.69347 5.74965 5.81689 5.92926 5.96065 6.10205 6.19372 6.22654 6.25638 6.34801 6.50522 6.86479 7.09128 7.38872 7.89238 8.07569 8.21183 8.95047 9.47313 10.33684 11.18028 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.003946 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.953990 B = 7094.551959 C = 7626.591922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.051 3.949 4 O 0.091 5.909 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.262 4.262 8 C 0.598 3.402 9 O -0.534 6.534 10 N -0.711 5.711 11 C 0.153 3.847 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.141 4.141 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.305 4.305 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.934 5.934 21 Si 1.070 2.930 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.102 3.898 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.201 0.799 32 H 0.400 0.600 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 -13.153 -18.335 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.013 4.013 4 O 0.031 5.969 5 N -0.061 5.061 6 C -0.160 4.160 7 C -0.269 4.269 8 C 0.384 3.616 9 O -0.412 6.412 10 N -0.361 5.361 11 C 0.049 3.951 12 H 0.111 0.889 13 C -0.217 4.217 14 C -0.161 4.161 15 C 0.008 3.992 16 N -0.357 5.357 17 C -0.431 4.431 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.576 5.576 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.023 4.023 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.218 0.782 32 H 0.234 0.766 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.209 -12.370 -19.912 24.837 hybrid contribution 1.321 -0.232 1.721 2.182 sum 9.530 -12.602 -18.190 24.094 Atomic orbital electron populations 1.21719 0.92739 1.03136 1.02794 1.20400 0.97331 0.85407 1.05532 1.24942 0.95060 0.96162 0.85148 1.84579 1.61283 1.17614 1.33403 1.73663 1.16384 0.98443 1.17560 1.26422 1.00730 0.99221 0.89585 1.22157 1.14021 0.95221 0.95536 1.16766 0.77265 0.84585 0.82964 1.90783 1.46845 1.21424 1.82158 1.45913 1.67225 1.16475 1.06479 1.21069 0.99205 0.96780 0.78060 0.88942 1.22125 0.97270 1.00326 1.01943 1.23579 0.99327 0.96099 0.97050 1.22253 0.92706 0.92836 0.91435 1.45969 1.41983 1.38730 1.08985 1.20166 1.09874 1.16411 0.96649 0.89903 1.25705 0.93912 0.96627 1.06043 1.70911 1.42515 1.41203 1.02997 0.83720 0.75619 0.75704 0.74715 1.22188 1.22206 1.21403 1.22839 0.93531 0.97932 0.87998 0.90895 0.91591 0.92344 0.89267 0.86709 0.78190 0.76608 0.92524 0.91109 0.92454 0.88362 0.93473 0.94252 0.92896 0.93720 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.05 -0.39 6.05 -27.89 -0.17 -0.55 16 3 C 0.05 0.52 6.80 -34.63 -0.24 0.28 16 4 O 0.09 0.97 11.06 18.64 0.21 1.18 16 5 N -0.36 -4.03 12.01 31.81 0.38 -3.65 16 6 C 0.02 0.23 11.95 -14.72 -0.18 0.05 16 7 C -0.26 -2.88 6.47 -102.89 -0.67 -3.55 16 8 C 0.60 7.52 7.78 -12.53 -0.10 7.43 16 9 O -0.53 -7.96 14.90 5.27 0.08 -7.88 16 10 N -0.71 -8.22 5.07 -54.89 -0.28 -8.50 16 11 C 0.15 2.01 2.47 -67.93 -0.17 1.85 16 12 H 0.09 1.39 7.32 -51.93 -0.38 1.01 16 13 C -0.16 -1.80 9.29 37.16 0.35 -1.46 16 14 C -0.14 -2.20 3.67 -89.96 -0.33 -2.53 16 15 C 0.13 2.51 7.33 -8.50 -0.06 2.44 16 16 N -0.63 -15.23 3.69 -184.57 -0.68 -15.92 16 17 C -0.30 -8.78 11.08 -15.06 -0.17 -8.95 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 20 N -0.93 -29.60 13.70 55.49 0.76 -28.84 16 21 Si 1.07 26.93 25.16 -169.99 -4.28 22.65 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.29 -6.91 6.51 56.52 0.37 -6.55 16 24 H -0.29 -6.82 6.21 56.52 0.35 -6.47 16 25 C 0.10 2.10 5.27 -8.36 -0.04 2.06 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.11 1.03 6.78 -51.93 -0.35 0.68 16 31 H 0.20 1.33 7.88 -52.49 -0.41 0.92 16 32 H 0.40 3.72 7.97 -40.82 -0.33 3.39 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 40 H 0.05 0.93 7.44 -51.93 -0.39 0.55 16 41 H 0.05 1.08 4.73 -51.93 -0.25 0.84 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -34.27 338.61 -6.16 -40.43 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.95 Total: -0.07 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.50 Total: -4.51 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.18 Total: -56.90 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.28 Total: -6.70 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.28 Total: 22.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.27 -6.16 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970517121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.035 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds