Wall clock time and date at job start Tue Mar 31 2020 03:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47451 * 2 1 4 4 O 1.33499 * 126.82912 * 269.99939 * 3 2 1 5 5 N 1.20658 * 113.15916 * 179.97438 * 4 3 2 6 6 C 1.30017 * 112.30056 * 359.73584 * 5 4 3 7 7 C 1.37357 * 126.83151 * 89.99771 * 3 2 1 8 8 C 1.47398 * 128.56315 * 359.97101 * 7 3 2 9 9 O 1.21610 * 120.00072 * 359.97438 * 8 7 3 10 10 N 1.34780 * 119.99965 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47047 * 300.00315 * 1 2 3 28 28 H 1.08999 * 109.46822 * 59.99522 * 1 2 3 29 29 H 1.09009 * 109.47433 * 240.00038 * 2 1 3 30 30 H 1.08996 * 109.47244 * 120.00181 * 2 1 3 31 31 H 1.07998 * 127.33992 * 180.27330 * 6 5 4 32 32 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 34 34 H 1.08998 * 109.47419 * 179.97438 * 13 11 10 35 35 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 36 36 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 37 37 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 38 38 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 39 39 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 40 40 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 41 41 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1752 -1.0686 5 7 2.6896 3.2807 -0.7834 6 6 2.7490 3.4666 0.5020 7 6 2.3068 2.1971 1.0994 8 6 2.1823 1.8469 2.5258 9 8 1.7905 0.7418 2.8486 10 7 2.5018 2.7517 3.4722 11 6 2.3775 2.4038 4.8898 12 1 1.5194 1.7463 5.0287 13 6 3.6483 1.6883 5.3528 14 6 2.1815 3.6788 5.7125 15 6 2.0377 3.4381 7.2217 16 7 0.9897 4.4699 7.2337 17 6 0.4856 5.3527 8.1513 18 1 0.9673 5.4677 9.1110 19 6 -0.6442 6.0997 7.8476 20 7 -1.1936 6.8651 8.7667 21 14 -1.3850 6.0186 6.1347 22 1 -2.6443 6.8049 6.1024 23 1 -0.4242 6.5821 5.1527 24 1 -1.6755 4.6042 5.7875 25 6 0.7167 4.1317 5.8288 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0592 4.3616 1.0208 32 1 2.8140 3.6332 3.2147 33 1 4.5064 2.3460 5.2139 34 1 3.5560 1.4299 6.4077 35 1 3.7879 0.7801 4.7666 36 1 2.8791 4.4745 5.4511 37 1 2.9249 3.7138 7.7918 38 1 1.6696 2.4427 7.4704 39 1 -0.8548 6.8511 9.6755 40 1 0.0004 3.3189 5.7093 41 1 0.4786 4.9983 5.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970517121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:10 Heat of formation + Delta-G solvation = 53.231399 kcal Electronic energy + Delta-G solvation = -23613.911346 eV Core-core repulsion = 20112.211850 eV Total energy + Delta-G solvation = -3501.699496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -45.94765 -41.14309 -39.96720 -36.45101 -35.54018 -34.81811 -34.44209 -32.14380 -31.06946 -29.49330 -27.15877 -26.18858 -25.16790 -24.94778 -23.19443 -21.99680 -21.60426 -20.81687 -19.56333 -18.98875 -18.73204 -17.61864 -17.45006 -16.98943 -16.16030 -16.02673 -15.71890 -15.47788 -15.28036 -15.13454 -14.73500 -14.42136 -14.30977 -13.66809 -13.53907 -13.29684 -13.23195 -13.13612 -12.83372 -12.51158 -12.46959 -12.36366 -12.12299 -11.85763 -11.70800 -11.45859 -11.33628 -11.11409 -11.08105 -10.84869 -10.54310 -10.05275 -9.23736 -8.62861 -5.49035 0.02335 0.77635 1.35002 1.45363 1.64311 1.71949 2.14704 2.19526 2.51637 2.98013 3.16918 3.23459 3.29737 3.47287 3.58608 3.85811 4.01109 4.19784 4.21303 4.27668 4.36194 4.41481 4.47630 4.58818 4.67096 4.69689 4.74371 4.81725 4.84151 4.88406 4.98489 5.05123 5.12927 5.19834 5.30748 5.32296 5.41471 5.54812 5.94237 6.49329 6.68944 7.12091 7.16537 7.31519 8.26582 8.88916 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.003946 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.953990 B = 7094.551959 C = 7626.591922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.058 3.942 4 O 0.085 5.915 5 N -0.378 5.378 6 C 0.035 3.965 7 C -0.282 4.282 8 C 0.600 3.400 9 O -0.561 6.561 10 N -0.704 5.704 11 C 0.163 3.837 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.103 4.103 15 C 0.130 3.870 16 N -0.663 5.663 17 C -0.291 4.291 18 H 0.052 0.948 19 C -0.085 4.085 20 N -0.973 5.973 21 Si 1.107 2.893 22 H -0.306 1.306 23 H -0.266 1.266 24 H -0.268 1.268 25 C 0.092 3.908 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.413 0.587 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.247 0.753 40 H 0.044 0.956 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.992 -14.250 -20.829 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.007 4.007 4 O 0.028 5.972 5 N -0.085 5.085 6 C -0.148 4.148 7 C -0.289 4.289 8 C 0.387 3.613 9 O -0.442 6.442 10 N -0.355 5.355 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.210 4.210 14 C -0.123 4.123 15 C 0.005 3.995 16 N -0.391 5.391 17 C -0.418 4.418 18 H 0.070 0.930 19 C -0.276 4.276 20 N -0.618 5.618 21 Si 0.933 3.067 22 H -0.234 1.234 23 H -0.192 1.192 24 H -0.194 1.194 25 C -0.033 4.033 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.247 0.753 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.734 -13.507 -22.440 27.942 hybrid contribution 0.941 0.019 2.551 2.719 sum 10.675 -13.489 -19.889 26.296 Atomic orbital electron populations 1.21700 0.92570 1.03957 1.01856 1.20502 0.97323 0.84400 1.06397 1.25352 0.93691 0.96710 0.84910 1.84573 1.61485 1.17625 1.33494 1.73659 1.17605 0.98883 1.18371 1.26890 0.99192 0.99587 0.89082 1.22084 1.15663 0.96268 0.94880 1.16896 0.76629 0.84202 0.83560 1.90773 1.48122 1.22619 1.82652 1.45764 1.66998 1.17105 1.05619 1.20816 0.99691 0.95011 0.78669 0.90717 1.22063 0.96657 1.00310 1.01979 1.23266 0.96265 0.97494 0.95240 1.22489 0.91397 0.91773 0.93858 1.46112 1.43311 1.39593 1.10129 1.20061 1.08948 1.16558 0.96276 0.92964 1.26994 0.94977 0.96832 1.08832 1.71008 1.44238 1.43714 1.02850 0.83284 0.75027 0.76730 0.71615 1.23418 1.19187 1.19369 1.23045 0.96744 0.97781 0.85707 0.89270 0.94043 0.91649 0.86492 0.87692 0.75292 0.75021 0.90831 0.90818 0.92680 0.86349 0.92517 0.93118 0.94411 0.93841 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.05 -0.68 6.05 29.85 0.18 -0.49 16 3 C 0.06 1.06 6.80 25.48 0.17 1.23 16 4 O 0.08 1.65 11.06 76.93 0.85 2.51 16 5 N -0.38 -7.76 12.01 -54.19 -0.65 -8.41 16 6 C 0.04 0.60 11.95 87.29 1.04 1.64 16 7 C -0.28 -5.57 6.47 -18.74 -0.12 -5.69 16 8 C 0.60 13.76 7.78 86.65 0.67 14.43 16 9 O -0.56 -15.92 14.90 -4.06 -0.06 -15.98 16 10 N -0.70 -14.03 5.07 -445.82 -2.26 -16.29 16 11 C 0.16 3.79 2.47 44.99 0.11 3.90 16 12 H 0.07 2.07 7.32 -2.39 -0.02 2.06 16 13 C -0.15 -2.94 9.29 71.98 0.67 -2.27 16 14 C -0.10 -2.88 3.67 -10.37 -0.04 -2.92 16 15 C 0.13 4.55 7.33 83.18 0.61 5.16 16 16 N -0.66 -31.30 3.69 -737.86 -2.72 -34.03 16 17 C -0.29 -16.94 11.08 84.03 0.93 -16.01 16 18 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 19 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 20 N -0.97 -63.51 13.70 21.65 0.30 -63.21 16 21 Si 1.11 53.92 25.16 68.60 1.73 55.65 16 22 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 23 H -0.27 -11.58 6.51 99.48 0.65 -10.93 16 24 H -0.27 -12.05 6.21 99.48 0.62 -11.43 16 25 C 0.09 3.53 5.27 83.27 0.44 3.97 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.10 1.74 6.78 -2.39 -0.02 1.72 16 31 H 0.23 2.16 7.88 -2.91 -0.02 2.14 16 32 H 0.41 6.02 7.97 -92.71 -0.74 5.28 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.40 7.48 -2.39 -0.02 1.38 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.68 16 39 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 40 H 0.04 1.71 7.44 -2.39 -0.02 1.69 16 41 H 0.05 1.91 4.73 -2.39 -0.01 1.90 16 Total: -1.00 -76.00 338.61 3.15 -72.85 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.12 Total: 9.89 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.85 Total: -2.98 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -5.34 Total: -121.94 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.79 Total: -13.47 kcal Atomic # 14 Polarization: 53.92 SS G_CDS: 1.73 Total: 55.65 kcal Total: -76.00 3.15 -72.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970517121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.085 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds