Wall clock time and date at job start Tue Mar 31 2020 03:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47231 * 2 1 4 4 C 1.35313 * 126.66271 * 89.99773 * 3 2 1 5 5 C 1.42271 * 103.92273 * 179.97438 * 4 3 2 6 6 C 1.48326 * 126.94251 * 180.02562 * 5 4 3 7 7 O 1.21495 * 119.99690 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99863 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47696 * 325.00099 * 9 8 6 11 11 C 1.53001 * 109.47105 * 85.00356 * 9 8 6 12 12 C 1.53000 * 109.46935 * 204.99806 * 9 8 6 13 13 C 1.53498 * 114.20476 * 180.02562 * 12 9 8 14 14 N 1.47072 * 87.98531 * 87.52370 * 13 12 9 15 15 C 1.36937 * 136.05474 * 207.08946 * 14 13 12 16 16 H 1.07997 * 120.00175 * 6.65345 * 15 14 13 17 17 C 1.38812 * 119.99799 * 186.65772 * 15 14 13 18 18 N 1.31617 * 119.99791 * 6.44001 * 17 15 14 19 19 Si 1.86796 * 120.00183 * 186.44246 * 17 15 14 20 20 H 1.48498 * 109.47075 * 265.01704 * 19 17 15 21 21 H 1.48500 * 109.46850 * 25.01427 * 19 17 15 22 22 H 1.48496 * 109.47374 * 145.01871 * 19 17 15 23 23 C 1.47066 * 87.88224 * 27.34172 * 14 13 12 24 24 N 1.30990 * 106.11979 * 0.26629 * 5 4 3 25 25 O 1.20904 * 111.43965 * 359.52968 * 24 5 4 26 26 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47493 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47380 * 59.99878 * 1 2 3 29 29 H 1.09003 * 109.47047 * 240.00569 * 2 1 3 30 30 H 1.08998 * 109.47153 * 120.00488 * 2 1 3 31 31 H 1.08003 * 128.03852 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99757 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46965 * 299.99998 * 11 9 8 34 34 H 1.09004 * 109.47240 * 59.99280 * 11 9 8 35 35 H 1.08995 * 109.47689 * 179.97438 * 11 9 8 36 36 H 1.08994 * 113.41432 * 46.80672 * 12 9 8 37 37 H 1.09000 * 113.47213 * 332.73897 * 13 12 9 38 38 H 1.09002 * 113.52190 * 202.30784 * 13 12 9 39 39 H 0.97000 * 119.99892 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.46757 * 87.44265 * 23 14 13 41 41 H 1.08999 * 113.46471 * 217.87772 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1826 1.0854 5 6 2.7396 3.4195 0.5355 6 6 3.1671 4.6264 1.2842 7 8 3.1654 4.6198 2.4992 8 7 3.5575 5.7304 0.6168 9 6 3.9792 6.9225 1.3564 10 1 3.3866 7.0141 2.2666 11 6 5.4597 6.7986 1.7222 12 6 3.7713 8.1631 0.4854 13 6 4.1811 9.4804 1.1583 14 7 5.5432 9.2554 0.6515 15 6 6.8090 9.6108 1.0345 16 1 6.9665 10.1158 1.9761 17 6 7.8896 9.3220 0.2125 18 7 7.6880 8.8226 -0.9884 19 14 9.6300 9.6422 0.8108 20 1 10.0789 10.9759 0.3366 21 1 9.6570 9.6097 2.2952 22 1 10.5377 8.5956 0.2761 23 6 4.9472 8.4860 -0.4511 24 7 2.6841 3.2789 -0.7657 25 8 2.2996 2.1752 -1.0749 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.2069 1.9138 2.1272 32 1 3.5585 5.7357 -0.3532 33 1 5.6079 5.9148 2.3427 34 1 6.0524 6.7070 0.8120 35 1 5.7737 7.6858 2.2721 36 1 2.7956 8.1933 0.0005 37 1 4.1123 9.4522 2.2458 38 1 3.6974 10.3575 0.7282 39 1 8.4431 8.6212 -1.5629 40 1 4.6651 9.1003 -1.3062 41 1 5.5312 7.6105 -0.7347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970755595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:22 Heat of formation + Delta-G solvation = 83.694151 kcal Electronic energy + Delta-G solvation = -23445.088050 eV Core-core repulsion = 19944.709518 eV Total energy + Delta-G solvation = -3500.378532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -45.20426 -39.81266 -38.41425 -35.25379 -34.50876 -33.93197 -32.17780 -30.49772 -29.61619 -27.71299 -25.19834 -24.70875 -24.42512 -23.82069 -22.60149 -21.30484 -19.86683 -18.65554 -17.93054 -17.50084 -16.82250 -16.68026 -15.70047 -15.01529 -14.95155 -14.84581 -14.64740 -14.38392 -13.80391 -13.70824 -13.58154 -13.01989 -12.61198 -12.43839 -12.19708 -11.84842 -11.80611 -11.35506 -11.24907 -11.12421 -10.98999 -10.77003 -10.61100 -10.52782 -10.39200 -10.11105 -9.85651 -9.71381 -9.64751 -9.19366 -8.75024 -8.72323 -6.83108 -5.78748 -3.09056 1.04334 1.54796 2.74372 3.11175 3.27193 3.38882 3.44927 3.46457 3.92482 4.28729 4.46317 4.61222 4.74372 4.84273 4.93941 5.14948 5.26953 5.27655 5.32606 5.37614 5.39380 5.54834 5.54984 5.69242 5.77100 5.91698 6.03106 6.29564 6.36650 6.47934 6.62074 6.68666 6.70434 6.98148 7.17018 7.25249 7.44228 7.53991 7.62874 7.93477 7.96293 8.26820 9.03167 9.70013 10.64610 11.39618 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.003231 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.184046 B = 8662.978786 C = 8936.041722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.037 4.037 4 C -0.182 4.182 5 C -0.020 4.020 6 C 0.595 3.405 7 O -0.529 6.529 8 N -0.700 5.700 9 C 0.175 3.825 10 H 0.081 0.919 11 C -0.147 4.147 12 C -0.163 4.163 13 C 0.127 3.873 14 N -0.603 5.603 15 C -0.215 4.215 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.917 5.917 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.165 3.835 24 N -0.330 5.330 25 O 0.121 5.879 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.405 0.595 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 -16.805 0.920 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.100 4.100 4 C -0.204 4.204 5 C -0.180 4.180 6 C 0.378 3.622 7 O -0.404 6.404 8 N -0.350 5.350 9 C 0.072 3.928 10 H 0.099 0.901 11 C -0.205 4.205 12 C -0.183 4.183 13 C 0.000 4.000 14 N -0.330 5.330 15 C -0.343 4.343 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.205 1.205 22 H -0.217 1.217 23 C 0.039 3.961 24 N -0.031 5.031 25 O 0.046 5.954 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.197 0.803 32 H 0.240 0.760 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.917 -15.866 0.794 21.120 hybrid contribution 0.911 0.076 0.302 0.963 sum -13.006 -15.790 1.096 20.486 Atomic orbital electron populations 1.21812 0.93392 1.02788 1.03012 1.20137 0.96686 0.86140 1.04978 1.24510 1.02633 0.97246 0.85591 1.22424 1.04787 0.91731 1.01447 1.23656 1.06010 0.98218 0.90073 1.16856 0.77751 0.81206 0.86404 1.90781 1.54732 1.82452 1.12451 1.46086 1.64882 1.13025 1.10972 1.20687 0.97098 0.81321 0.93722 0.90139 1.22170 0.93899 1.01560 1.02831 1.23381 0.99445 0.95053 1.00463 1.22343 0.87313 0.93047 0.97290 1.45778 0.99271 1.60397 1.27515 1.18873 0.80489 1.33318 1.01572 0.90180 1.24778 0.97773 1.01873 0.95769 1.69839 1.29623 1.49149 1.07804 0.86172 0.84633 0.77395 0.78031 1.21723 1.20497 1.21669 1.22082 0.88347 0.95371 0.90269 1.74208 1.13974 0.99177 1.15709 1.84780 1.60057 1.17132 1.33446 0.91180 0.91963 0.91952 0.89101 0.88307 0.80335 0.76023 0.95124 0.91048 0.89142 0.91024 0.93952 0.94720 0.93706 0.95400 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.15 0.37 -0.32 16 2 C -0.04 -0.21 6.50 -27.88 -0.18 -0.39 16 3 C -0.04 -0.34 6.73 -35.35 -0.24 -0.58 16 4 C -0.18 -2.07 10.92 -39.08 -0.43 -2.49 16 5 C -0.02 -0.29 7.19 -82.53 -0.59 -0.89 16 6 C 0.59 10.11 7.81 -12.11 -0.09 10.01 16 7 O -0.53 -10.24 16.62 5.37 0.09 -10.15 16 8 N -0.70 -11.71 5.08 -54.60 -0.28 -11.99 16 9 C 0.17 3.18 2.76 -67.93 -0.19 3.00 16 10 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 11 C -0.15 -3.07 8.06 37.16 0.30 -2.77 16 12 C -0.16 -2.99 4.25 -89.97 -0.38 -3.38 16 13 C 0.13 2.54 7.86 -8.51 -0.07 2.48 16 14 N -0.60 -14.82 2.16 -184.59 -0.40 -15.22 16 15 C -0.22 -5.84 9.57 -15.06 -0.14 -5.98 16 16 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 17 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 18 N -0.92 -26.78 11.81 55.49 0.66 -26.13 16 19 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.17 3.74 6.22 -8.38 -0.05 3.69 16 24 N -0.33 -4.63 11.84 33.29 0.39 -4.24 16 25 O 0.12 1.42 11.18 17.25 0.19 1.61 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.41 6.39 8.36 -40.82 -0.34 6.05 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.68 6.32 -51.93 -0.33 1.35 16 35 H 0.09 2.05 5.93 -51.93 -0.31 1.74 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.60 6.17 -51.93 -0.32 1.28 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -31.86 342.77 -6.89 -38.75 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.89 Total: 3.01 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.80 Total: 2.14 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.37 Total: -57.57 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.28 Total: -8.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.86 -6.89 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970755595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.444 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds