Wall clock time and date at job start Tue Mar 31 2020 03:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47231 * 2 1 4 4 C 1.35313 * 126.66271 * 89.99773 * 3 2 1 5 5 C 1.42271 * 103.92273 * 179.97438 * 4 3 2 6 6 C 1.48326 * 126.94251 * 180.02562 * 5 4 3 7 7 O 1.21495 * 119.99690 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99863 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47696 * 325.00099 * 9 8 6 11 11 C 1.53001 * 109.47105 * 85.00356 * 9 8 6 12 12 C 1.53000 * 109.46935 * 204.99806 * 9 8 6 13 13 C 1.53498 * 114.20476 * 180.02562 * 12 9 8 14 14 N 1.47072 * 87.98531 * 87.52370 * 13 12 9 15 15 C 1.36937 * 136.05474 * 207.08946 * 14 13 12 16 16 H 1.07997 * 120.00175 * 6.65345 * 15 14 13 17 17 C 1.38812 * 119.99799 * 186.65772 * 15 14 13 18 18 N 1.31617 * 119.99791 * 6.44001 * 17 15 14 19 19 Si 1.86796 * 120.00183 * 186.44246 * 17 15 14 20 20 H 1.48498 * 109.47075 * 265.01704 * 19 17 15 21 21 H 1.48500 * 109.46850 * 25.01427 * 19 17 15 22 22 H 1.48496 * 109.47374 * 145.01871 * 19 17 15 23 23 C 1.47066 * 87.88224 * 27.34172 * 14 13 12 24 24 N 1.30990 * 106.11979 * 0.26629 * 5 4 3 25 25 O 1.20904 * 111.43965 * 359.52968 * 24 5 4 26 26 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47493 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47380 * 59.99878 * 1 2 3 29 29 H 1.09003 * 109.47047 * 240.00569 * 2 1 3 30 30 H 1.08998 * 109.47153 * 120.00488 * 2 1 3 31 31 H 1.08003 * 128.03852 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99757 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46965 * 299.99998 * 11 9 8 34 34 H 1.09004 * 109.47240 * 59.99280 * 11 9 8 35 35 H 1.08995 * 109.47689 * 179.97438 * 11 9 8 36 36 H 1.08994 * 113.41432 * 46.80672 * 12 9 8 37 37 H 1.09000 * 113.47213 * 332.73897 * 13 12 9 38 38 H 1.09002 * 113.52190 * 202.30784 * 13 12 9 39 39 H 0.97000 * 119.99892 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.46757 * 87.44265 * 23 14 13 41 41 H 1.08999 * 113.46471 * 217.87772 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1826 1.0854 5 6 2.7396 3.4195 0.5355 6 6 3.1671 4.6264 1.2842 7 8 3.1654 4.6198 2.4992 8 7 3.5575 5.7304 0.6168 9 6 3.9792 6.9225 1.3564 10 1 3.3866 7.0141 2.2666 11 6 5.4597 6.7986 1.7222 12 6 3.7713 8.1631 0.4854 13 6 4.1811 9.4804 1.1583 14 7 5.5432 9.2554 0.6515 15 6 6.8090 9.6108 1.0345 16 1 6.9665 10.1158 1.9761 17 6 7.8896 9.3220 0.2125 18 7 7.6880 8.8226 -0.9884 19 14 9.6300 9.6422 0.8108 20 1 10.0789 10.9759 0.3366 21 1 9.6570 9.6097 2.2952 22 1 10.5377 8.5956 0.2761 23 6 4.9472 8.4860 -0.4511 24 7 2.6841 3.2789 -0.7657 25 8 2.2996 2.1752 -1.0749 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.2069 1.9138 2.1272 32 1 3.5585 5.7357 -0.3532 33 1 5.6079 5.9148 2.3427 34 1 6.0524 6.7070 0.8120 35 1 5.7737 7.6858 2.2721 36 1 2.7956 8.1933 0.0005 37 1 4.1123 9.4522 2.2458 38 1 3.6974 10.3575 0.7282 39 1 8.4431 8.6212 -1.5629 40 1 4.6651 9.1003 -1.3062 41 1 5.5312 7.6105 -0.7347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970755595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:21 Heat of formation + Delta-G solvation = 63.599687 kcal Electronic energy + Delta-G solvation = -23445.959411 eV Core-core repulsion = 19944.709518 eV Total energy + Delta-G solvation = -3501.249893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.17855 -41.31937 -39.99955 -36.11740 -35.78482 -34.95227 -34.16589 -31.48125 -30.95319 -29.63605 -26.60172 -26.41006 -25.55240 -24.92259 -23.67765 -22.85757 -21.15365 -20.15642 -18.93350 -18.74751 -18.38544 -17.93925 -17.16998 -16.90393 -16.37199 -16.09522 -15.69076 -15.45771 -15.35925 -14.91765 -14.52634 -14.35872 -14.02473 -13.61913 -13.46631 -13.09557 -12.97600 -12.86866 -12.81091 -12.61389 -12.43074 -12.38588 -12.14859 -11.83246 -11.71644 -11.58376 -11.54878 -11.51403 -10.94141 -10.76565 -10.46766 -10.22617 -8.82519 -7.89881 -5.19217 0.02141 0.65144 1.44333 1.45307 1.53883 1.76764 2.00926 2.05368 2.47870 2.84921 3.33806 3.43951 3.53806 3.65492 3.83337 3.90823 4.09643 4.19259 4.30092 4.37853 4.45542 4.47853 4.65891 4.74203 4.76997 4.85692 4.97998 4.99109 5.01756 5.03820 5.09333 5.16760 5.23299 5.39281 5.42879 5.50122 5.56886 5.67805 5.93732 6.28556 6.87495 6.93655 7.03006 7.63294 8.64498 9.28741 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.003231 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.184046 B = 8662.978786 C = 8936.041722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.014 4.014 4 C -0.193 4.193 5 C -0.046 4.046 6 C 0.596 3.404 7 O -0.556 6.556 8 N -0.697 5.697 9 C 0.183 3.817 10 H 0.089 0.911 11 C -0.130 4.130 12 C -0.132 4.132 13 C 0.127 3.873 14 N -0.629 5.629 15 C -0.214 4.214 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.949 5.949 19 Si 0.966 3.034 20 H -0.289 1.289 21 H -0.269 1.269 22 H -0.298 1.298 23 C 0.164 3.836 24 N -0.349 5.349 25 O 0.127 5.873 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.193 0.807 32 H 0.410 0.590 33 H 0.028 0.972 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.245 0.755 40 H 0.018 0.982 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 -18.279 1.514 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.077 4.077 4 C -0.216 4.216 5 C -0.204 4.204 6 C 0.381 3.619 7 O -0.433 6.433 8 N -0.347 5.347 9 C 0.080 3.920 10 H 0.107 0.893 11 C -0.188 4.188 12 C -0.152 4.152 13 C 0.001 3.999 14 N -0.356 5.356 15 C -0.342 4.342 16 H 0.101 0.899 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.796 3.204 20 H -0.216 1.216 21 H -0.193 1.193 22 H -0.225 1.225 23 C 0.038 3.962 24 N -0.049 5.049 25 O 0.050 5.950 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.211 0.789 32 H 0.246 0.754 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.617 -17.318 1.402 23.362 hybrid contribution 1.344 0.445 0.118 1.420 sum -14.274 -16.873 1.520 22.153 Atomic orbital electron populations 1.21823 0.92730 1.03988 1.02377 1.20443 0.97025 0.83361 1.06957 1.25252 1.00198 0.98227 0.84046 1.22662 1.05336 0.90824 1.02757 1.23486 1.07921 0.98379 0.90628 1.17136 0.76895 0.81655 0.86223 1.90754 1.55917 1.83053 1.13615 1.45977 1.64838 1.12780 1.11122 1.20483 0.95253 0.82047 0.94250 0.89289 1.21938 0.95511 1.00514 1.00827 1.23147 0.99238 0.94247 0.98519 1.22518 0.84805 0.94302 0.98249 1.46044 1.00175 1.60909 1.28425 1.19178 0.81965 1.31693 1.01378 0.89932 1.25482 1.01123 1.02799 0.96151 1.70001 1.29881 1.51070 1.08897 0.85234 0.80495 0.76719 0.78000 1.21622 1.19331 1.22505 1.22024 0.89688 0.94009 0.90450 1.74208 1.14721 1.00392 1.15554 1.84749 1.59331 1.16693 1.34248 0.89086 0.92545 0.92696 0.87289 0.86148 0.78936 0.75444 0.95294 0.94236 0.90913 0.87534 0.92641 0.93060 0.94566 0.96459 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 71.98 0.71 -0.21 16 2 C -0.04 -0.27 6.50 29.85 0.19 -0.08 16 3 C -0.01 -0.23 6.73 25.01 0.17 -0.06 16 4 C -0.19 -4.11 10.92 22.60 0.25 -3.86 16 5 C -0.05 -1.32 7.19 42.96 0.31 -1.01 16 6 C 0.60 20.07 7.81 86.93 0.68 20.75 16 7 O -0.56 -21.34 16.62 -3.70 -0.06 -21.40 16 8 N -0.70 -23.07 5.08 -444.96 -2.26 -25.33 16 9 C 0.18 6.55 2.76 44.99 0.12 6.67 16 10 H 0.09 3.13 7.58 -2.39 -0.02 3.11 16 11 C -0.13 -5.51 8.06 71.98 0.58 -4.93 16 12 C -0.13 -4.64 4.25 -10.37 -0.04 -4.69 16 13 C 0.13 4.88 7.86 83.18 0.65 5.53 16 14 N -0.63 -30.98 2.16 -737.93 -1.60 -32.57 16 15 C -0.21 -11.70 9.57 84.03 0.80 -10.89 16 16 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 18 N -0.95 -57.11 11.81 21.65 0.26 -56.85 16 19 Si 0.97 46.18 29.56 68.60 2.03 48.21 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 C 0.16 7.51 6.22 83.26 0.52 8.02 16 24 N -0.35 -9.56 11.84 -49.51 -0.59 -10.15 16 25 O 0.13 2.78 11.18 71.91 0.80 3.58 16 26 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.41 12.86 8.36 -92.70 -0.78 12.09 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.92 6.32 -2.38 -0.02 1.90 16 35 H 0.07 3.33 5.93 -2.39 -0.01 3.31 16 36 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 1.86 6.17 -2.39 -0.01 1.85 16 Total: -1.00 -70.38 342.77 4.27 -66.11 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.27 Total: 16.22 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.41 Total: 12.18 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -4.19 Total: -124.90 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.74 Total: -17.82 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -70.38 4.27 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970755595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.707 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds