Wall clock time and date at job start Tue Mar 31 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30012 * 127.33582 * 2 1 4 4 O 1.20660 * 112.30044 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15981 * 359.76113 * 4 3 2 6 6 C 1.50697 * 126.83004 * 180.26318 * 5 4 3 7 7 C 1.37359 * 106.33685 * 0.38483 * 5 4 3 8 8 C 1.47401 * 128.56258 * 179.91302 * 7 5 4 9 9 O 1.21608 * 119.99839 * 269.67568 * 8 7 5 10 10 N 1.34779 * 119.99859 * 89.94898 * 8 7 5 11 11 C 1.47021 * 125.65065 * 359.75576 * 10 8 7 12 12 C 1.54318 * 107.26942 * 181.02098 * 11 10 8 13 13 C 1.55157 * 102.94700 * 22.18927 * 12 11 10 14 14 H 1.09003 * 111.00096 * 82.60930 * 13 12 11 15 15 N 1.46501 * 111.00670 * 206.42221 * 13 12 11 16 16 C 1.46500 * 119.99645 * 58.54716 * 15 13 12 17 17 C 1.36926 * 120.00135 * 238.54907 * 15 13 12 18 18 H 1.08006 * 120.00532 * 23.29477 * 17 15 13 19 19 C 1.38815 * 120.00084 * 203.29896 * 17 15 13 20 20 N 1.31619 * 119.99846 * 13.96206 * 19 17 15 21 21 Si 1.86802 * 120.00189 * 193.96064 * 19 17 15 22 22 H 1.48504 * 109.46654 * 59.99905 * 21 19 17 23 23 H 1.48501 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47301 * 300.00004 * 21 19 17 25 25 C 1.47430 * 125.64589 * 179.44328 * 10 8 7 26 26 H 1.09000 * 109.47040 * 269.99375 * 1 2 3 27 27 H 1.08991 * 109.47086 * 29.99989 * 1 2 3 28 28 H 1.09000 * 109.46851 * 150.00100 * 1 2 3 29 29 H 1.08998 * 109.47347 * 270.14621 * 6 5 4 30 30 H 1.09006 * 109.47140 * 30.14971 * 6 5 4 31 31 H 1.09002 * 109.46767 * 150.14268 * 6 5 4 32 32 H 1.09000 * 109.87511 * 300.43858 * 11 10 8 33 33 H 1.08997 * 109.88419 * 61.44207 * 11 10 8 34 34 H 1.09005 * 110.72144 * 140.55778 * 12 11 10 35 35 H 1.08996 * 110.71950 * 263.64553 * 12 11 10 36 36 H 1.09004 * 109.47388 * 95.16657 * 16 15 13 37 37 H 1.08999 * 109.46809 * 215.17111 * 16 15 13 38 38 H 1.08998 * 109.47149 * 335.16601 * 16 15 13 39 39 H 0.96997 * 120.00006 * 180.02562 * 20 19 17 40 40 H 1.09007 * 110.36262 * 274.75218 * 25 10 8 41 41 H 1.09000 * 110.36968 * 37.06845 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0060 6 6 4.9712 -1.3246 0.0137 7 6 2.3992 -1.1696 0.0005 8 6 2.0401 -2.5992 0.0015 9 8 1.8918 -3.1895 -1.0513 10 7 1.8707 -3.2507 1.1691 11 6 2.0174 -2.6617 2.5081 12 6 1.7553 -3.7845 3.5338 13 6 2.0316 -5.0738 2.7160 14 1 3.0984 -5.2958 2.6852 15 7 1.2772 -6.2087 3.2538 16 6 -0.1842 -6.1448 3.3337 17 6 1.9380 -7.3290 3.6817 18 1 2.9737 -7.2639 3.9810 19 6 1.2767 -8.5485 3.7308 20 7 0.1206 -8.6954 3.1191 21 14 2.0277 -9.9813 4.6651 22 1 2.1971 -9.6071 6.0922 23 1 1.1313 -11.1610 4.5661 24 1 3.3514 -10.3142 4.0803 25 6 1.5014 -4.6705 1.3150 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 5.2951 -1.5006 -1.0120 30 1 5.7148 -0.7178 0.5306 31 1 4.8598 -2.2790 0.5284 32 1 3.0282 -2.2735 2.6335 33 1 1.2929 -1.8583 2.6411 34 1 2.4438 -3.7066 4.3753 35 1 0.7219 -3.7578 3.8792 36 1 -0.6173 -6.6136 2.4501 37 1 -0.5225 -6.6703 4.2267 38 1 -0.5001 -5.1028 3.3839 39 1 -0.3416 -9.5474 3.1537 40 1 0.4186 -4.7875 1.2685 41 1 1.9820 -5.2691 0.5412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971055353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:33 Heat of formation + Delta-G solvation = 53.615623 kcal Electronic energy + Delta-G solvation = -24028.516590 eV Core-core repulsion = 20526.833755 eV Total energy + Delta-G solvation = -3501.682835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.97748 -39.75860 -37.47782 -34.89477 -34.63026 -33.70823 -31.67082 -29.86732 -28.96003 -28.50821 -27.70239 -26.11838 -24.88630 -22.98996 -22.32474 -20.51202 -19.46101 -19.27923 -17.95536 -17.47413 -17.10035 -16.45403 -15.91890 -15.35959 -14.80918 -14.28360 -14.02226 -13.70929 -13.44885 -13.40020 -13.36122 -13.31180 -12.92879 -12.75044 -12.62609 -12.48174 -12.34340 -12.03966 -11.55063 -11.23264 -10.95670 -10.84686 -10.56925 -10.54207 -10.35527 -10.18864 -9.96588 -9.91592 -9.87049 -9.47048 -8.65105 -8.44102 -6.86535 -5.81584 -3.29879 1.18685 1.79073 2.45664 2.71242 3.20483 3.34575 3.40578 3.41059 3.95749 4.11260 4.41547 4.57936 4.78502 4.93192 5.03377 5.14561 5.16782 5.25373 5.27411 5.29487 5.39829 5.44878 5.49470 5.56663 5.68297 5.73636 5.82131 5.88043 5.94140 6.22947 6.30359 6.43197 6.54263 6.70296 6.79711 7.26272 7.62112 7.64988 7.72495 8.08670 8.18690 8.29941 9.12738 9.75031 10.23779 11.22661 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029122 B = 0.003632 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.253293 B = 7707.433317 C = 7980.456344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.358 5.358 4 O 0.094 5.906 5 C 0.014 3.986 6 C -0.078 4.078 7 C -0.239 4.239 8 C 0.607 3.393 9 O -0.530 6.530 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.153 4.153 13 C 0.174 3.826 14 H 0.079 0.921 15 N -0.583 5.583 16 C 0.158 3.842 17 C -0.265 4.265 18 H 0.070 0.930 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.087 3.913 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.003 0.997 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 16.474 -2.443 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.066 5.066 4 O 0.032 5.968 5 C -0.049 4.049 6 C -0.135 4.135 7 C -0.246 4.246 8 C 0.393 3.607 9 O -0.407 6.407 10 N -0.335 5.335 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.063 3.937 14 H 0.098 0.902 15 N -0.303 5.303 16 C 0.013 3.987 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.037 4.037 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.021 0.979 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.674 17.292 -3.059 18.172 hybrid contribution 0.130 -1.515 0.435 1.582 sum 4.804 15.777 -2.624 16.700 Atomic orbital electron populations 1.20228 0.85199 1.04278 1.03832 1.24730 0.98567 0.86531 1.00923 1.73591 0.89160 1.23347 1.20454 1.84506 1.21474 1.22619 1.68167 1.24591 0.97431 0.83634 0.99268 1.20466 0.88917 0.99329 1.04822 1.21955 0.92816 0.95361 1.14511 1.16487 0.77618 0.83615 0.82982 1.90830 1.51391 1.67821 1.30670 1.48471 1.67158 1.12759 1.05072 1.22016 1.00600 0.96926 0.82180 1.23229 1.03005 0.95609 0.97501 1.21503 0.96278 0.87285 0.88598 0.90235 1.43846 1.02394 1.13580 1.70495 1.20824 0.82706 0.94042 1.01078 1.19159 0.96766 0.85768 1.37743 0.91228 1.25058 0.97547 0.97293 0.99283 1.70056 1.16493 1.24502 1.43548 0.86308 0.78371 0.81758 0.79910 1.20974 1.21585 1.20814 1.23251 1.00904 0.78384 1.01183 0.89616 0.89976 0.89667 0.88670 0.89117 0.88698 0.92015 0.92219 0.90473 0.90404 0.94798 0.93911 0.97891 0.93494 0.91054 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.49 36.01 0.38 -0.43 16 2 C 0.05 0.71 7.59 -79.77 -0.61 0.11 16 3 N -0.36 -4.78 12.01 34.78 0.42 -4.36 16 4 O 0.09 1.15 11.06 18.65 0.21 1.35 16 5 C 0.01 0.16 7.55 -34.63 -0.26 -0.10 16 6 C -0.08 -0.63 10.33 36.00 0.37 -0.26 16 7 C -0.24 -3.32 5.42 -102.89 -0.56 -3.87 16 8 C 0.61 9.97 7.63 -12.53 -0.10 9.87 16 9 O -0.53 -10.67 17.36 5.27 0.09 -10.58 16 10 N -0.60 -9.45 3.33 -171.66 -0.57 -10.02 16 11 C 0.11 1.39 6.47 -3.07 -0.02 1.37 16 12 C -0.15 -2.29 6.48 -24.90 -0.16 -2.45 16 13 C 0.17 3.27 3.55 -65.67 -0.23 3.04 16 14 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 15 N -0.58 -13.63 2.96 -170.90 -0.51 -14.13 16 16 C 0.16 3.64 7.60 59.85 0.45 4.10 16 17 C -0.27 -6.90 9.60 -15.06 -0.14 -7.04 16 18 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 19 C 0.01 0.20 5.08 -17.43 -0.09 0.11 16 20 N -0.90 -25.41 10.78 55.49 0.60 -24.81 16 21 Si 0.91 21.05 29.58 -169.99 -5.03 16.02 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.09 1.60 6.47 -2.41 -0.02 1.58 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.22 6.38 -51.93 -0.33 0.89 16 36 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 37 H 0.04 1.06 7.39 -51.93 -0.38 0.68 16 38 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.07 1.41 7.05 -51.92 -0.37 1.04 16 41 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -31.22 342.55 -6.58 -37.80 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.97 Total: -2.46 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.98 Total: 6.02 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.06 Total: -53.32 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.30 Total: -9.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.22 -6.58 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971055353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.415 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds