Wall clock time and date at job start Tue Mar 31 2020 03:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30251 * 125.62257 * 2 1 4 4 C 1.34478 * 108.70630 * 179.97438 * 3 2 1 5 5 C 1.34327 * 107.66583 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.44262 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47220 * 89.99451 * 6 5 4 8 8 O 1.21286 * 119.99785 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.47016 * 125.65003 * 0.04557 * 9 7 6 11 11 C 1.54372 * 107.28967 * 181.05101 * 10 9 7 12 12 C 1.55151 * 102.91791 * 22.14492 * 11 10 9 13 13 H 1.08996 * 111.01066 * 82.63333 * 12 11 10 14 14 N 1.46501 * 111.00333 * 206.45057 * 12 11 10 15 15 C 1.46507 * 119.99934 * 55.41658 * 14 12 11 16 16 C 1.36932 * 120.00434 * 235.41807 * 14 12 11 17 17 H 1.07998 * 119.99654 * 23.39201 * 16 14 12 18 18 C 1.38808 * 120.00358 * 203.40008 * 16 14 12 19 19 N 1.31623 * 120.00217 * 14.29417 * 18 16 14 20 20 Si 1.86800 * 120.00106 * 194.29947 * 18 16 14 21 21 H 1.48493 * 109.47126 * 59.99715 * 20 18 16 22 22 H 1.48497 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47243 * 299.99739 * 20 18 16 24 24 C 1.47427 * 125.64551 * 180.02562 * 9 7 6 25 25 O 1.33970 * 125.62157 * 180.27996 * 2 1 3 26 26 H 1.08999 * 109.47038 * 90.02827 * 1 2 3 27 27 H 1.08999 * 109.46950 * 210.02478 * 1 2 3 28 28 H 1.08995 * 109.47131 * 330.02827 * 1 2 3 29 29 H 1.08001 * 126.16502 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46957 * 329.99530 * 6 5 4 31 31 H 1.08998 * 109.47218 * 209.99312 * 6 5 4 32 32 H 1.08994 * 109.88365 * 300.44333 * 10 9 7 33 33 H 1.09008 * 109.87992 * 61.44984 * 10 9 7 34 34 H 1.08994 * 110.70928 * 263.79334 * 11 10 9 35 35 H 1.09004 * 110.75129 * 140.50520 * 11 10 9 36 36 H 1.09001 * 109.47224 * 95.18115 * 15 14 12 37 37 H 1.08997 * 109.47162 * 215.18398 * 15 14 12 38 38 H 1.09000 * 109.46756 * 335.17926 * 15 14 12 39 39 H 0.97000 * 120.00147 * 179.97438 * 19 18 16 40 40 H 1.08996 * 110.36753 * 37.07115 * 24 9 7 41 41 H 1.09002 * 110.36642 * 274.74420 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5549 0.0014 7 6 5.2005 -1.8482 1.4225 8 8 4.5593 -1.3888 2.3438 9 7 6.2761 -2.6217 1.6696 10 6 7.1387 -3.2402 0.6524 11 6 8.2193 -4.0514 1.3988 12 6 7.5681 -4.3042 2.7842 13 1 6.8936 -5.1596 2.7487 14 7 8.5891 -4.4866 3.8189 15 6 9.6117 -3.4586 4.0282 16 6 8.5877 -5.6180 4.5903 17 1 8.1159 -6.5188 4.2267 18 6 9.1924 -5.6069 5.8397 19 7 9.5152 -4.4627 6.4046 20 14 9.5482 -7.2159 6.7194 21 1 10.4580 -8.0440 5.8878 22 1 10.1934 -6.9332 8.0267 23 1 8.2766 -7.9497 6.9429 24 6 6.7828 -2.9874 3.0049 25 8 2.2873 -1.0890 -0.0053 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 4.4157 1.3162 0.0003 30 1 5.6085 -1.0440 -0.5117 31 1 4.5700 -2.4897 -0.5127 32 1 6.5489 -3.9035 0.0199 33 1 7.6067 -2.4667 0.0433 34 1 9.1348 -3.4692 1.5034 35 1 8.4166 -4.9938 0.8878 36 1 9.2959 -2.7897 4.8288 37 1 10.5537 -3.9337 4.3021 38 1 9.7463 -2.8877 3.1095 39 1 9.9374 -4.4550 7.2778 40 1 5.9539 -3.1509 3.6935 41 1 7.4455 -2.2100 3.3852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971672838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:05 Heat of formation + Delta-G solvation = 19.014636 kcal Electronic energy + Delta-G solvation = -23277.674799 eV Core-core repulsion = 19774.491553 eV Total energy + Delta-G solvation = -3503.183246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.41227 -39.82139 -37.52462 -34.85901 -34.82549 -33.29794 -31.78425 -30.65258 -29.74445 -28.02565 -26.17467 -25.97359 -23.58028 -22.48013 -22.34309 -21.22062 -19.39326 -19.16046 -17.35468 -17.11774 -16.99733 -16.43422 -16.04436 -15.30452 -15.03855 -14.38237 -14.35407 -14.01222 -13.51114 -13.38974 -13.28109 -13.12336 -12.84983 -12.68463 -12.60104 -12.42453 -12.12960 -11.97335 -11.54727 -11.33572 -10.95445 -10.83604 -10.64203 -10.57306 -10.50651 -10.33218 -9.96232 -9.89130 -9.79092 -8.76004 -8.63804 -8.40278 -6.85218 -5.80535 -3.28752 1.30750 2.45133 2.58995 2.69802 3.20842 3.35407 3.41139 3.41814 3.92300 4.42027 4.45497 4.60547 4.78744 4.87668 4.92331 5.07272 5.10250 5.19757 5.24110 5.29803 5.35563 5.42863 5.56130 5.69334 5.75720 5.83635 5.89404 5.95010 6.23465 6.24288 6.32471 6.45190 6.57296 6.72808 6.81862 7.26572 7.62618 7.64738 7.69751 7.73555 8.24651 8.31554 9.13842 9.76215 10.24963 11.23768 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.002928 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.260530 B = 9560.251231 C = 9839.294586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.187 3.813 3 N -0.484 5.484 4 C -0.026 4.026 5 C -0.024 4.024 6 C -0.052 4.052 7 C 0.523 3.477 8 O -0.536 6.536 9 N -0.612 5.612 10 C 0.101 3.899 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.583 5.583 15 C 0.157 3.843 16 C -0.264 4.264 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.908 3.092 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.087 3.913 25 O -0.197 6.197 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.182 0.818 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.004 0.996 39 H 0.255 0.745 40 H 0.072 0.928 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 5.854 -17.098 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.214 5.214 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.092 4.092 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.347 5.347 10 C -0.022 4.022 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.304 5.304 15 C 0.013 3.987 16 C -0.394 4.394 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.737 3.263 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.037 4.037 25 O -0.084 6.084 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.199 0.801 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.578 6.733 -16.400 20.644 hybrid contribution 0.671 -1.405 0.593 1.666 sum -9.907 5.328 -15.808 19.401 Atomic orbital electron populations 1.20237 0.81394 1.05200 1.04448 1.26232 0.96416 0.78676 1.00661 1.70407 1.02053 1.30319 1.18637 1.22960 0.95113 0.92749 1.05647 1.22506 0.83140 0.94835 1.07237 1.20051 0.92004 1.00518 0.96605 1.19895 0.79881 0.78752 0.90437 1.90754 1.52842 1.51426 1.46239 1.48521 1.27393 1.48973 1.09773 1.22097 0.92470 0.96454 0.91227 1.23209 0.97877 0.99764 0.98513 1.21464 0.90124 0.94121 0.88102 0.90385 1.43855 1.27292 1.21045 1.38160 1.20833 0.91907 0.91040 0.94943 1.19159 1.35227 0.88565 0.96434 0.91244 1.25069 1.01413 0.96821 0.96011 1.70060 1.44928 1.23599 1.16024 0.86298 0.78249 0.83017 0.78729 1.20970 1.21587 1.20826 1.23171 0.98547 0.99316 0.82693 1.84347 1.16517 1.37779 1.69760 0.89063 0.89342 0.88138 0.80061 0.85681 0.86994 0.91713 0.91831 0.90301 0.90441 0.94842 0.93926 0.97771 0.93495 0.90919 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.19 2.33 8.34 -12.95 -0.11 2.22 16 3 N -0.48 -6.85 11.29 -11.10 -0.13 -6.98 16 4 C -0.03 -0.35 11.80 -17.77 -0.21 -0.56 16 5 C -0.02 -0.31 5.88 -35.69 -0.21 -0.52 16 6 C -0.05 -0.55 5.44 -29.03 -0.16 -0.71 16 7 C 0.52 8.17 7.84 -10.98 -0.09 8.09 16 8 O -0.54 -10.94 16.29 5.55 0.09 -10.85 16 9 N -0.61 -9.36 3.33 -170.50 -0.57 -9.93 16 10 C 0.10 1.18 6.49 -3.04 -0.02 1.16 16 11 C -0.15 -2.24 6.49 -24.87 -0.16 -2.40 16 12 C 0.17 3.30 3.54 -65.79 -0.23 3.07 16 13 H 0.08 1.52 7.95 -51.93 -0.41 1.10 16 14 N -0.58 -13.87 2.96 -171.04 -0.51 -14.37 16 15 C 0.16 3.67 7.73 59.85 0.46 4.13 16 16 C -0.26 -7.00 9.60 -15.06 -0.14 -7.15 16 17 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 18 C 0.01 0.17 5.07 -17.43 -0.09 0.08 16 19 N -0.90 -25.81 10.81 55.49 0.60 -25.21 16 20 Si 0.91 21.37 29.58 -169.99 -5.03 16.34 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.09 1.65 6.49 -2.54 -0.02 1.63 16 25 O -0.20 -2.73 10.78 5.36 0.06 -2.67 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.86 7.32 -51.93 -0.38 0.48 16 37 H 0.04 1.07 7.41 -51.93 -0.38 0.68 16 38 H 0.00 0.08 6.17 -51.93 -0.32 -0.24 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 41 H 0.07 1.41 7.20 -51.93 -0.37 1.03 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -34.39 341.18 -6.89 -41.28 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.96 Total: -1.77 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.59 Total: 9.02 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.60 Total: -56.49 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.15 Total: -13.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.39 -6.89 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971672838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.294 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds