Wall clock time and date at job start Tue Mar 31 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 O 1.33496 * 126.82732 * 269.97667 * 3 2 1 5 5 N 1.20659 * 113.15364 * 179.97438 * 4 3 2 6 6 C 1.30015 * 112.30502 * 359.97438 * 5 4 3 7 7 C 1.37362 * 126.83195 * 90.28223 * 3 2 1 8 8 C 1.47395 * 128.56491 * 0.02562 * 7 3 2 9 9 O 1.21610 * 120.00017 * 0.15929 * 8 7 3 10 10 N 1.34779 * 120.00092 * 180.15798 * 8 7 3 11 11 C 1.47022 * 125.64888 * 359.68780 * 10 8 7 12 12 C 1.54329 * 107.26460 * 178.84806 * 11 10 8 13 13 C 1.55157 * 103.02372 * 338.14623 * 12 11 10 14 14 H 1.09002 * 111.03780 * 277.21655 * 13 12 11 15 15 N 1.46507 * 111.00631 * 153.37818 * 13 12 11 16 16 C 1.46500 * 119.99875 * 306.35053 * 15 13 12 17 17 C 1.36930 * 119.99847 * 126.35095 * 15 13 12 18 18 H 1.07995 * 120.00322 * 23.30681 * 17 15 13 19 19 C 1.38813 * 119.99953 * 203.31049 * 17 15 13 20 20 N 1.31626 * 119.99949 * 14.00828 * 19 17 15 21 21 Si 1.86794 * 120.00259 * 194.00920 * 19 17 15 22 22 H 1.48499 * 109.47028 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47264 * 119.99431 * 21 19 17 24 24 H 1.48503 * 109.47135 * 239.99906 * 21 19 17 25 25 C 1.47428 * 125.64747 * 179.97438 * 10 8 7 26 26 H 1.09009 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47358 * 300.00132 * 1 2 3 28 28 H 1.08998 * 109.47087 * 60.00169 * 1 2 3 29 29 H 1.09004 * 109.47072 * 239.99793 * 2 1 3 30 30 H 1.09002 * 109.47534 * 119.99997 * 2 1 3 31 31 H 1.07997 * 127.33243 * 179.97438 * 6 5 4 32 32 H 1.08991 * 109.88450 * 298.39994 * 11 10 8 33 33 H 1.08999 * 109.87815 * 59.56237 * 11 10 8 34 34 H 1.08993 * 110.85282 * 219.67608 * 12 11 10 35 35 H 1.09004 * 110.66739 * 96.52513 * 12 11 10 36 36 H 1.09002 * 109.46756 * 95.16626 * 16 15 13 37 37 H 1.08999 * 109.47066 * 215.17135 * 16 15 13 38 38 H 1.08997 * 109.47080 * 335.16763 * 16 15 13 39 39 H 0.96993 * 120.00066 * 180.02562 * 20 19 17 40 40 H 1.09003 * 110.36457 * 322.93375 * 25 10 8 41 41 H 1.09006 * 110.36281 * 85.14393 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1751 -1.0686 5 7 2.6896 3.2806 -0.7833 6 6 2.7533 3.4651 0.5021 7 6 2.3118 2.1953 1.0994 8 6 2.1951 1.8424 2.5257 9 8 1.8090 0.7354 2.8486 10 7 2.5162 2.7467 3.4722 11 6 3.0002 4.1125 3.2233 12 6 3.2072 4.7827 4.5979 13 6 2.2981 3.9452 5.5357 14 1 1.2639 4.2857 5.4846 15 7 2.7920 3.9801 6.9146 16 6 4.1801 3.6125 7.2049 17 6 1.9561 4.3562 7.9319 18 1 0.8865 4.2646 7.8138 19 6 2.4836 4.8552 9.1150 20 7 3.7453 5.2263 9.1681 21 14 1.4028 5.0001 10.6316 22 1 0.0342 4.5206 10.3118 23 1 1.9734 4.1753 11.7267 24 1 1.3413 6.4202 11.0618 25 6 2.4460 2.5281 4.9285 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.0686 4.3583 1.0207 32 1 3.9441 4.0780 2.6795 33 1 2.2595 4.6693 2.6493 34 1 2.8832 5.8231 4.5750 35 1 4.2499 4.7117 4.9074 36 1 4.7943 4.5123 7.2403 37 1 4.2272 3.1023 8.1669 38 1 4.5514 2.9496 6.4235 39 1 4.1140 5.5747 9.9948 40 1 1.5798 1.9156 5.1788 41 1 3.3606 2.0544 5.2854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972460192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:11 Heat of formation + Delta-G solvation = 38.938708 kcal Electronic energy + Delta-G solvation = -23828.111546 eV Core-core repulsion = 20325.792272 eV Total energy + Delta-G solvation = -3502.319273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.98949 -41.08744 -38.94860 -36.64483 -35.64663 -34.79787 -33.40701 -31.59974 -31.11605 -29.56387 -28.06044 -26.55184 -25.04129 -24.75189 -23.67323 -22.64381 -20.96014 -20.21140 -18.96227 -18.80374 -18.75279 -17.63459 -17.53138 -16.77459 -16.41351 -15.73999 -15.53626 -15.12379 -15.04198 -14.90241 -14.52228 -14.35450 -14.23856 -13.85781 -13.59962 -13.43746 -12.94167 -12.85133 -12.82941 -12.51510 -12.45639 -12.35703 -12.15382 -12.07505 -11.87728 -11.83017 -11.55933 -11.40521 -11.20151 -10.65767 -10.56903 -9.72408 -8.79396 -7.84281 -5.33520 -0.02671 0.72728 1.46818 1.49490 1.58474 1.61944 1.97335 2.06463 2.51150 3.14055 3.27134 3.29078 3.48098 3.51921 3.75148 3.89373 4.03077 4.15183 4.15774 4.26052 4.29059 4.36577 4.40984 4.61718 4.71053 4.73900 4.80368 4.87560 4.97042 4.97873 5.11483 5.14872 5.20612 5.29363 5.30355 5.40753 5.65177 5.71306 6.31368 6.41465 6.95794 7.09723 7.13535 7.83450 8.27243 9.18456 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030577 B = 0.003408 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.506465 B = 8214.276093 C = 8690.893526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.062 3.938 4 O 0.091 5.909 5 N -0.373 5.373 6 C 0.028 3.972 7 C -0.278 4.278 8 C 0.607 3.393 9 O -0.569 6.569 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.141 4.141 13 C 0.166 3.834 14 H 0.075 0.925 15 N -0.600 5.600 16 C 0.176 3.824 17 C -0.268 4.268 18 H 0.071 0.929 19 C -0.046 4.046 20 N -0.932 5.932 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.101 3.899 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.030 0.970 39 H 0.249 0.751 40 H 0.060 0.940 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -5.863 -19.954 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.002 4.002 4 O 0.033 5.967 5 N -0.080 5.080 6 C -0.155 4.155 7 C -0.286 4.286 8 C 0.398 3.602 9 O -0.450 6.450 10 N -0.336 5.336 11 C -0.022 4.022 12 C -0.181 4.181 13 C 0.057 3.943 14 H 0.093 0.907 15 N -0.321 5.321 16 C 0.032 3.968 17 C -0.398 4.398 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.220 1.220 24 H -0.218 1.218 25 C -0.024 4.024 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.245 0.755 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.393 -5.680 -20.771 21.666 hybrid contribution -0.224 0.134 2.207 2.222 sum -2.617 -5.546 -18.564 19.551 Atomic orbital electron populations 1.21695 0.92223 1.04051 1.01934 1.20524 0.97649 0.84222 1.06342 1.25308 0.93575 0.96658 0.84686 1.84566 1.61274 1.17585 1.33227 1.73664 1.17377 0.98862 1.18066 1.27204 0.99529 0.99699 0.89030 1.21902 1.15807 0.96625 0.94224 1.16638 0.77040 0.83218 0.83342 1.90757 1.49379 1.22228 1.82618 1.48196 1.64513 1.14654 1.06246 1.22493 1.00446 0.81045 0.98252 1.23079 1.01191 1.00368 0.93469 1.21530 0.97338 0.91705 0.83725 0.90653 1.43958 1.09442 1.77085 1.01649 1.20516 0.84515 0.96011 0.95787 1.19549 0.90135 1.35844 0.94271 0.91154 1.25714 0.97613 0.99005 1.01797 1.70214 1.14498 1.46728 1.26398 0.85234 0.78735 0.76856 0.79774 1.19251 1.21969 1.21786 1.22677 1.01155 0.99998 0.78596 0.89164 0.94184 0.91232 0.86122 0.88201 0.75462 0.89036 0.88820 0.89455 0.91336 0.96870 0.96962 0.95148 0.94193 0.92152 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.05 -0.80 6.06 29.85 0.18 -0.62 16 3 C 0.06 1.31 6.80 25.48 0.17 1.48 16 4 O 0.09 1.92 11.06 76.96 0.85 2.77 16 5 N -0.37 -8.36 12.01 -54.18 -0.65 -9.01 16 6 C 0.03 0.57 10.77 87.29 0.94 1.51 16 7 C -0.28 -6.73 6.37 -18.75 -0.12 -6.85 16 8 C 0.61 18.20 7.85 86.65 0.68 18.88 16 9 O -0.57 -20.12 15.49 -4.06 -0.06 -20.18 16 10 N -0.60 -17.60 3.33 -815.73 -2.71 -20.32 16 11 C 0.10 2.26 5.04 86.73 0.44 2.70 16 12 C -0.14 -4.18 6.51 31.78 0.21 -3.98 16 13 C 0.17 6.21 3.54 46.37 0.16 6.37 16 14 H 0.08 2.87 7.95 -2.39 -0.02 2.85 16 15 N -0.60 -28.47 2.96 -695.07 -2.05 -30.52 16 16 C 0.18 8.32 7.61 127.77 0.97 9.29 16 17 C -0.27 -14.20 9.60 84.03 0.81 -13.39 16 18 H 0.07 3.64 7.86 -2.91 -0.02 3.62 16 19 C -0.05 -2.47 5.08 84.86 0.43 -2.04 16 20 N -0.93 -53.35 10.79 21.65 0.23 -53.11 16 21 Si 0.97 44.07 29.58 68.60 2.03 46.10 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 C 0.10 3.51 6.46 86.85 0.56 4.07 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.10 2.00 6.76 -2.39 -0.02 1.98 16 31 H 0.23 3.33 5.14 -2.91 -0.01 3.31 16 32 H 0.09 1.66 7.12 -2.39 -0.02 1.65 16 33 H 0.09 1.68 6.90 -2.39 -0.02 1.66 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.20 7.08 -2.38 -0.02 2.18 16 36 H 0.01 0.67 7.33 -2.39 -0.02 0.65 16 37 H 0.01 0.61 7.39 -2.39 -0.02 0.60 16 38 H 0.03 1.23 6.34 -2.39 -0.02 1.21 16 39 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 41 H 0.06 2.24 6.34 -2.38 -0.02 2.22 16 Total: -1.00 -65.82 331.36 4.82 -61.00 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.05 Total: 7.29 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.14 Total: 15.99 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -5.18 Total: -112.96 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.79 Total: -17.42 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.82 4.82 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972460192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.938 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds