Wall clock time and date at job start Tue Mar 31 2020 02:52:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86807 * 120.00024 * 2 1
4 4 H 1.48498 * 109.47216 * 274.81859 * 3 2 1
5 5 H 1.48501 * 109.46922 * 34.81560 * 3 2 1
6 6 H 1.48501 * 109.47078 * 154.81442 * 3 2 1
7 7 C 1.38810 * 119.99970 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00007 * 170.80914 * 7 2 1
9 9 N 1.36932 * 119.99952 * 350.81170 * 7 2 1
10 10 C 1.48152 * 127.83523 * 164.39059 * 9 7 2
11 11 C 1.54387 * 104.61476 * 140.39690 * 10 9 7
12 12 H 1.09005 * 118.18066 * 244.20271 * 11 10 9
13 13 C 1.53005 * 118.12432 * 87.19056 * 11 10 9
14 14 H 1.08994 * 117.40404 * 16.12559 * 13 11 10
15 15 C 1.53001 * 117.44200 * 160.80921 * 13 11 10
16 16 N 1.46501 * 109.46831 * 244.24028 * 15 13 11
17 17 C 1.34779 * 120.00043 * 180.02562 * 16 15 13
18 18 O 1.21280 * 119.99554 * 359.97438 * 17 16 15
19 19 C 1.50696 * 120.00305 * 179.97438 * 17 16 15
20 20 H 1.09001 * 110.43174 * 59.29579 * 19 17 16
21 21 C 1.54623 * 110.48897 * 181.83762 * 19 17 16
22 22 C 1.54477 * 101.76429 * 93.87756 * 21 19 17
23 23 N 1.46763 * 105.47222 * 25.42162 * 22 21 19
24 24 C 1.34743 * 111.35050 * 343.01135 * 23 22 21
25 25 O 1.21280 * 125.12154 * 180.38819 * 24 23 22
26 26 C 1.53000 * 60.55374 * 268.45656 * 13 11 10
27 27 H 1.08997 * 119.53931 * 248.22728 * 26 13 11
28 28 C 1.48146 * 127.83889 * 344.36683 * 9 7 2
29 29 H 0.97000 * 120.00012 * 359.97438 * 1 2 3
30 30 H 1.08994 * 110.40659 * 21.61119 * 10 9 7
31 31 H 1.09004 * 110.40618 * 259.18102 * 10 9 7
32 32 H 1.08999 * 109.47176 * 4.23467 * 15 13 11
33 33 H 1.08998 * 109.46925 * 124.23821 * 15 13 11
34 34 H 0.97000 * 120.00467 * 359.97438 * 16 15 13
35 35 H 1.08998 * 110.97140 * 212.00066 * 21 19 17
36 36 H 1.09002 * 110.97055 * 335.72524 * 21 19 17
37 37 H 1.09007 * 110.24652 * 144.41766 * 22 21 19
38 38 H 1.08997 * 110.24893 * 266.32876 * 22 21 19
39 39 H 0.97000 * 124.34970 * 162.98543 * 23 22 21
40 40 H 1.09003 * 110.40709 * 100.82071 * 28 9 7
41 41 H 1.08998 * 110.40757 * 338.38929 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3958 2.1053 -1.3951
5 1 1.5022 2.6212 0.7994
6 1 3.5949 1.4130 0.5958
7 6 2.0102 -1.2021 -0.0005
8 1 3.0798 -1.2081 -0.1499
9 7 1.3387 -2.3805 0.1883
10 6 1.8192 -3.7545 -0.0874
11 6 1.2882 -4.5969 1.0924
12 1 2.0132 -5.0548 1.7654
13 6 -0.1166 -5.1926 0.9787
14 1 -0.5678 -5.2277 -0.0128
15 6 -0.4636 -6.3617 1.9026
16 7 -0.7156 -7.5607 1.0994
17 6 -1.0418 -8.7204 1.7037
18 8 -1.1264 -8.7714 2.9125
19 6 -1.3016 -9.9536 0.8775
20 1 -0.4228 -10.2062 0.2842
21 6 -1.7004 -11.1396 1.7859
22 6 -3.2424 -11.0502 1.7615
23 7 -3.5758 -10.3776 0.5004
24 6 -2.5034 -9.7475 -0.0179
25 8 -2.5003 -9.1089 -1.0489
26 6 0.0671 -3.8164 1.6215
27 1 -0.1176 -3.6927 2.6885
28 6 -0.0328 -2.5705 0.7151
29 1 -0.4850 0.8400 0.0004
30 1 2.9086 -3.7785 -0.1116
31 1 1.4091 -4.1187 -1.0294
32 1 0.3685 -6.5476 2.5816
33 1 -1.3555 -6.1166 2.4793
34 1 -0.6483 -7.5198 0.1326
35 1 -1.3577 -12.0852 1.3658
36 1 -1.3172 -11.0025 2.7970
37 1 -3.6785 -12.0490 1.7830
38 1 -3.5998 -10.4650 2.6087
39 1 -4.4554 -10.3857 0.0917
40 1 -0.7322 -2.7498 -0.1016
41 1 -0.3406 -1.7013 1.2963
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000978584169.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:52:15
Heat of formation + Delta-G solvation = -11.992649 kcal
Electronic energy + Delta-G solvation = -23061.265245 eV
Core-core repulsion = 19556.737422 eV
Total energy + Delta-G solvation = -3504.527823 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.21700 -39.28280 -38.58366 -36.70158 -34.99364 -33.35376 -31.95674 -30.80853
-28.63006 -27.15721 -26.98449 -24.88332 -22.65913 -21.80914 -21.12574 -20.48209
-19.64439 -19.23692 -17.89279 -17.80922 -16.80064 -16.08464 -16.01090 -15.51256
-14.93098 -14.74388 -14.25740 -14.11912 -14.04416 -13.72701 -13.55432 -13.13042
-12.99524 -12.73459 -12.63645 -11.95320 -11.82941 -11.75327 -11.24902 -11.09563
-10.81490 -10.65539 -10.43522 -10.28542 -10.12431 -10.09438 -9.72775 -9.52311
-9.42735 -9.12832 -8.96756 -8.62945 -6.85091 -5.78621 -3.12752 1.97573
2.39784 2.90490 3.09980 3.38803 3.44394 3.46715 3.87338 3.97908
4.14316 4.37393 4.47550 4.61069 4.71960 4.90204 5.03658 5.13544
5.29748 5.40572 5.43620 5.46122 5.51509 5.59706 5.78535 5.88278
5.92343 5.97379 6.23794 6.29564 6.32428 6.53638 6.56738 6.68337
6.72795 6.93743 7.34739 7.38225 7.54637 7.72878 7.78672 7.99570
8.22160 9.12191 9.75120 10.52463 11.35795
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.039047 B = 0.002692 C = 0.002640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.909393 B =10400.222648 C =10604.035200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.006 4.006
3 Si 0.913 3.087
4 H -0.288 1.288
5 H -0.289 1.289
6 H -0.280 1.280
7 C -0.227 4.227
8 H 0.076 0.924
9 N -0.594 5.594
10 C 0.153 3.847
11 C -0.171 4.171
12 H 0.103 0.897
13 C -0.152 4.152
14 H 0.104 0.896
15 C 0.155 3.845
16 N -0.714 5.714
17 C 0.529 3.471
18 O -0.535 6.535
19 C -0.153 4.153
20 H 0.134 0.866
21 C -0.119 4.119
22 C 0.099 3.901
23 N -0.729 5.729
24 C 0.530 3.470
25 O -0.517 6.517
26 C -0.161 4.161
27 H 0.103 0.897
28 C 0.183 3.817
29 H 0.254 0.746
30 H 0.050 0.950
31 H 0.025 0.975
32 H 0.070 0.930
33 H 0.071 0.929
34 H 0.409 0.591
35 H 0.090 0.910
36 H 0.110 0.890
37 H 0.084 0.916
38 H 0.078 0.922
39 H 0.414 0.586
40 H 0.024 0.976
41 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.450 -24.226 3.931 25.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.203 4.203
3 Si 0.743 3.257
4 H -0.215 1.215
5 H -0.216 1.216
6 H -0.205 1.205
7 C -0.355 4.355
8 H 0.094 0.906
9 N -0.318 5.318
10 C 0.027 3.973
11 C -0.190 4.190
12 H 0.121 0.879
13 C -0.171 4.171
14 H 0.122 0.878
15 C 0.032 3.968
16 N -0.365 5.365
17 C 0.313 3.687
18 O -0.413 6.413
19 C -0.177 4.177
20 H 0.152 0.848
21 C -0.157 4.157
22 C -0.025 4.025
23 N -0.385 5.385
24 C 0.314 3.686
25 O -0.392 6.392
26 C -0.181 4.181
27 H 0.121 0.879
28 C 0.058 3.942
29 H 0.064 0.936
30 H 0.068 0.932
31 H 0.042 0.958
32 H 0.088 0.912
33 H 0.089 0.911
34 H 0.244 0.756
35 H 0.108 0.892
36 H 0.129 0.871
37 H 0.102 0.898
38 H 0.096 0.904
39 H 0.253 0.747
40 H 0.042 0.958
41 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -5.392 -23.585 4.281 24.570
hybrid contribution 0.042 0.767 -0.611 0.981
sum -5.350 -22.818 3.671 23.723
Atomic orbital electron populations
1.69900 1.05068 1.25386 1.55811 1.24901 0.95642 0.97983 1.01807
0.86102 0.78767 0.83329 0.77549 1.21513 1.21561 1.20517 1.19002
0.90822 0.82381 1.43302 0.90581 1.45208 1.13467 0.99997 1.73126
1.21147 0.97145 0.86012 0.92993 1.23994 0.89782 1.02584 1.02682
0.87895 1.22539 1.00440 0.93726 1.00386 0.87794 1.20920 1.01110
0.82108 0.92697 1.46070 1.69406 1.09472 1.11533 1.19679 0.77124
0.83890 0.88040 1.90702 1.52028 1.84716 1.13829 1.22174 1.00343
0.96415 0.98794 0.84822 1.22605 0.94538 0.96353 1.02228 1.22143
0.96095 0.98069 0.86200 1.46230 1.12764 1.54316 1.25217 1.20391
0.85186 0.78259 0.84749 1.90820 1.84495 1.40269 1.23618 1.24231
1.02139 0.91709 1.00048 0.87875 1.21066 0.86871 0.92703 0.93574
0.93573 0.93166 0.95767 0.91155 0.91062 0.75569 0.89184 0.87125
0.89804 0.90370 0.74724 0.95836 0.89185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.06 10.87 55.49 0.60 -26.46 16
2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16
3 Si 0.91 22.09 29.56 -169.99 -5.03 17.06 16
4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16
8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16
9 N -0.59 -15.44 3.38 -168.86 -0.57 -16.01 16
10 C 0.15 3.25 7.04 -2.41 -0.02 3.23 16
11 C -0.17 -3.04 6.74 -89.22 -0.60 -3.65 16
12 H 0.10 1.68 8.12 -51.93 -0.42 1.26 16
13 C -0.15 -2.41 5.39 -90.62 -0.49 -2.90 16
14 H 0.10 1.71 8.04 -51.93 -0.42 1.29 16
15 C 0.15 2.13 5.95 -4.04 -0.02 2.11 16
16 N -0.71 -8.83 5.51 -60.29 -0.33 -9.16 16
17 C 0.53 6.29 7.17 -10.99 -0.08 6.21 16
18 O -0.54 -7.70 15.46 5.56 0.09 -7.61 16
19 C -0.15 -1.31 3.32 -91.79 -0.30 -1.62 16
20 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16
21 C -0.12 -0.71 6.51 -25.10 -0.16 -0.87 16
22 C 0.10 0.54 7.78 -3.12 -0.02 0.51 16
23 N -0.73 -5.39 6.25 -59.12 -0.37 -5.76 16
24 C 0.53 5.49 7.72 -10.72 -0.08 5.41 16
25 O -0.52 -7.29 17.99 5.56 0.10 -7.19 16
26 C -0.16 -3.08 6.85 -89.22 -0.61 -3.69 16
27 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16
28 C 0.18 4.47 5.70 -2.41 -0.01 4.45 16
29 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16
30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16
33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.41 4.80 8.37 -40.82 -0.34 4.46 16
35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.11 0.76 6.94 -51.93 -0.36 0.40 16
37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16
38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.41 2.43 8.96 -40.82 -0.37 2.07 16
40 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16
41 H 0.09 2.44 6.52 -51.93 -0.34 2.10 16
LS Contribution 340.59 15.07 5.13 5.13
Total: -1.00 -34.05 340.59 -9.04 -43.09
By element:
Atomic # 1 Polarization: 10.52 SS G_CDS: -6.01 Total: 4.51 kcal
Atomic # 6 Polarization: 5.04 SS G_CDS: -2.66 Total: 2.38 kcal
Atomic # 7 Polarization: -56.71 SS G_CDS: -0.67 Total: -57.38 kcal
Atomic # 8 Polarization: -14.98 SS G_CDS: 0.19 Total: -14.79 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -34.05 -9.04 -43.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978584169.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.102 kcal
(2) G-P(sol) polarization free energy of solvation -34.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds