Wall clock time and date at job start Tue Mar 31 2020 02:52:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86807 * 120.00024 * 2 1
4 4 H 1.48498 * 109.47216 * 274.81859 * 3 2 1
5 5 H 1.48501 * 109.46922 * 34.81560 * 3 2 1
6 6 H 1.48501 * 109.47078 * 154.81442 * 3 2 1
7 7 C 1.38810 * 119.99970 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00007 * 170.80914 * 7 2 1
9 9 N 1.36932 * 119.99952 * 350.81170 * 7 2 1
10 10 C 1.48152 * 127.83523 * 164.39059 * 9 7 2
11 11 C 1.54387 * 104.61476 * 140.39690 * 10 9 7
12 12 H 1.09005 * 118.18066 * 244.20271 * 11 10 9
13 13 C 1.53005 * 118.12432 * 87.19056 * 11 10 9
14 14 H 1.08994 * 117.40404 * 16.12559 * 13 11 10
15 15 C 1.53001 * 117.44200 * 160.80921 * 13 11 10
16 16 N 1.46501 * 109.46831 * 244.24028 * 15 13 11
17 17 C 1.34779 * 120.00043 * 180.02562 * 16 15 13
18 18 O 1.21280 * 119.99554 * 359.97438 * 17 16 15
19 19 C 1.50696 * 120.00305 * 179.97438 * 17 16 15
20 20 H 1.09001 * 110.43174 * 59.29579 * 19 17 16
21 21 C 1.54623 * 110.48897 * 181.83762 * 19 17 16
22 22 C 1.54477 * 101.76429 * 93.87756 * 21 19 17
23 23 N 1.46763 * 105.47222 * 25.42162 * 22 21 19
24 24 C 1.34743 * 111.35050 * 343.01135 * 23 22 21
25 25 O 1.21280 * 125.12154 * 180.38819 * 24 23 22
26 26 C 1.53000 * 60.55374 * 268.45656 * 13 11 10
27 27 H 1.08997 * 119.53931 * 248.22728 * 26 13 11
28 28 C 1.48146 * 127.83889 * 344.36683 * 9 7 2
29 29 H 0.97000 * 120.00012 * 359.97438 * 1 2 3
30 30 H 1.08994 * 110.40659 * 21.61119 * 10 9 7
31 31 H 1.09004 * 110.40618 * 259.18102 * 10 9 7
32 32 H 1.08999 * 109.47176 * 4.23467 * 15 13 11
33 33 H 1.08998 * 109.46925 * 124.23821 * 15 13 11
34 34 H 0.97000 * 120.00467 * 359.97438 * 16 15 13
35 35 H 1.08998 * 110.97140 * 212.00066 * 21 19 17
36 36 H 1.09002 * 110.97055 * 335.72524 * 21 19 17
37 37 H 1.09007 * 110.24652 * 144.41766 * 22 21 19
38 38 H 1.08997 * 110.24893 * 266.32876 * 22 21 19
39 39 H 0.97000 * 124.34970 * 162.98543 * 23 22 21
40 40 H 1.09003 * 110.40709 * 100.82071 * 28 9 7
41 41 H 1.08998 * 110.40757 * 338.38929 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3958 2.1053 -1.3951
5 1 1.5022 2.6212 0.7994
6 1 3.5949 1.4130 0.5958
7 6 2.0102 -1.2021 -0.0005
8 1 3.0798 -1.2081 -0.1499
9 7 1.3387 -2.3805 0.1883
10 6 1.8192 -3.7545 -0.0874
11 6 1.2882 -4.5969 1.0924
12 1 2.0132 -5.0548 1.7654
13 6 -0.1166 -5.1926 0.9787
14 1 -0.5678 -5.2277 -0.0128
15 6 -0.4636 -6.3617 1.9026
16 7 -0.7156 -7.5607 1.0994
17 6 -1.0418 -8.7204 1.7037
18 8 -1.1264 -8.7714 2.9125
19 6 -1.3016 -9.9536 0.8775
20 1 -0.4228 -10.2062 0.2842
21 6 -1.7004 -11.1396 1.7859
22 6 -3.2424 -11.0502 1.7615
23 7 -3.5758 -10.3776 0.5004
24 6 -2.5034 -9.7475 -0.0179
25 8 -2.5003 -9.1089 -1.0489
26 6 0.0671 -3.8164 1.6215
27 1 -0.1176 -3.6927 2.6885
28 6 -0.0328 -2.5705 0.7151
29 1 -0.4850 0.8400 0.0004
30 1 2.9086 -3.7785 -0.1116
31 1 1.4091 -4.1187 -1.0294
32 1 0.3685 -6.5476 2.5816
33 1 -1.3555 -6.1166 2.4793
34 1 -0.6483 -7.5198 0.1326
35 1 -1.3577 -12.0852 1.3658
36 1 -1.3172 -11.0025 2.7970
37 1 -3.6785 -12.0490 1.7830
38 1 -3.5998 -10.4650 2.6087
39 1 -4.4554 -10.3857 0.0917
40 1 -0.7322 -2.7498 -0.1016
41 1 -0.3406 -1.7013 1.2963
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000978584169.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:52:13
Heat of formation + Delta-G solvation = -37.743170 kcal
Electronic energy + Delta-G solvation = -23062.381872 eV
Core-core repulsion = 19556.737422 eV
Total energy + Delta-G solvation = -3505.644449 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 2.31 seconds
Orbital eigenvalues (eV)
-41.99169 -40.59785 -39.77785 -37.46693 -36.32676 -35.01534 -32.92689 -32.39055
-29.53528 -28.90312 -28.31841 -26.53180 -23.52698 -22.73689 -22.46559 -21.78703
-20.90329 -20.67667 -18.89008 -18.68750 -18.51051 -17.21009 -16.83694 -16.78078
-16.34540 -15.83077 -15.75511 -15.30005 -14.85951 -14.72290 -14.70872 -14.61394
-14.36786 -14.04391 -13.61683 -13.38691 -13.19930 -12.91468 -12.71292 -12.44752
-12.34043 -12.25745 -11.99888 -11.95562 -11.78202 -11.33709 -11.04524 -10.91354
-10.72206 -10.58703 -10.13111 -10.10307 -8.92576 -7.93015 -5.29663 1.15101
1.45535 1.47146 1.52780 1.57197 2.07327 2.39661 2.46696 2.71350
3.24211 3.25056 3.42420 3.57672 3.64358 3.71532 3.83123 4.03335
4.18384 4.23389 4.25075 4.40603 4.52573 4.53860 4.62161 4.68989
4.77645 4.91230 5.00016 5.03525 5.13034 5.17910 5.32607 5.39679
5.43311 5.50583 5.64085 5.72205 5.90818 6.16186 6.39343 6.99326
7.03915 7.11591 7.66687 8.45308 9.20966
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.039047 B = 0.002692 C = 0.002640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.909393 B =10400.222648 C =10604.035200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C -0.065 4.065
3 Si 0.982 3.018
4 H -0.285 1.285
5 H -0.292 1.292
6 H -0.267 1.267
7 C -0.242 4.242
8 H 0.082 0.918
9 N -0.620 5.620
10 C 0.147 3.853
11 C -0.156 4.156
12 H 0.130 0.870
13 C -0.117 4.117
14 H 0.099 0.901
15 C 0.164 3.836
16 N -0.715 5.715
17 C 0.528 3.472
18 O -0.560 6.560
19 C -0.148 4.148
20 H 0.154 0.846
21 C -0.113 4.113
22 C 0.096 3.904
23 N -0.719 5.719
24 C 0.522 3.478
25 O -0.563 6.563
26 C -0.174 4.174
27 H 0.118 0.882
28 C 0.188 3.812
29 H 0.250 0.750
30 H 0.060 0.940
31 H 0.023 0.977
32 H 0.078 0.922
33 H 0.069 0.931
34 H 0.412 0.588
35 H 0.120 0.880
36 H 0.103 0.897
37 H 0.119 0.881
38 H 0.070 0.930
39 H 0.420 0.580
40 H -0.003 1.003
41 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.724 -26.733 4.709 27.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.258 4.258
3 Si 0.809 3.191
4 H -0.212 1.212
5 H -0.219 1.219
6 H -0.191 1.191
7 C -0.371 4.371
8 H 0.100 0.900
9 N -0.344 5.344
10 C 0.022 3.978
11 C -0.176 4.176
12 H 0.148 0.852
13 C -0.136 4.136
14 H 0.117 0.883
15 C 0.041 3.959
16 N -0.366 5.366
17 C 0.313 3.687
18 O -0.439 6.439
19 C -0.173 4.173
20 H 0.172 0.828
21 C -0.151 4.151
22 C -0.027 4.027
23 N -0.374 5.374
24 C 0.307 3.693
25 O -0.442 6.442
26 C -0.194 4.194
27 H 0.135 0.865
28 C 0.063 3.937
29 H 0.059 0.941
30 H 0.078 0.922
31 H 0.041 0.959
32 H 0.096 0.904
33 H 0.087 0.913
34 H 0.249 0.751
35 H 0.139 0.861
36 H 0.122 0.878
37 H 0.137 0.863
38 H 0.089 0.911
39 H 0.260 0.740
40 H 0.015 0.985
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.671 -26.158 5.077 27.052
hybrid contribution -0.227 1.476 -0.870 1.729
sum -4.898 -24.681 4.207 25.512
Atomic orbital electron populations
1.70104 1.06606 1.25749 1.57174 1.25780 0.96518 1.01417 1.02092
0.85026 0.77871 0.78784 0.77388 1.21222 1.21874 1.19107 1.19411
0.91407 0.83640 1.42598 0.90039 1.45536 1.13936 1.01249 1.73716
1.21307 0.97842 0.84384 0.94303 1.23935 0.90467 1.01987 1.01189
0.85227 1.22413 0.98506 0.92522 1.00116 0.88299 1.20719 1.01257
0.81794 0.92134 1.46059 1.69588 1.09342 1.11632 1.20182 0.76112
0.84382 0.87989 1.90693 1.53009 1.85190 1.15041 1.22225 1.00571
0.95680 0.98781 0.82826 1.22690 0.94640 0.96393 1.01371 1.22351
0.96127 0.99504 0.84750 1.46318 1.12519 1.53167 1.25425 1.20698
0.86285 0.77912 0.84392 1.90795 1.85323 1.42411 1.25684 1.23921
1.04548 0.91052 0.99900 0.86453 1.20793 0.86029 0.93834 0.93077
0.94121 0.92197 0.95908 0.90372 0.91320 0.75141 0.86150 0.87837
0.86327 0.91137 0.73972 0.98465 0.92751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.13 10.87 21.65 0.24 -57.89 16
2 C -0.06 -3.73 5.40 84.86 0.46 -3.27 16
3 Si 0.98 46.10 29.56 68.60 2.03 48.13 16
4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
7 C -0.24 -13.82 10.35 84.03 0.87 -12.95 16
8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16
9 N -0.62 -32.80 3.38 -688.14 -2.32 -35.13 16
10 C 0.15 6.15 7.04 86.53 0.61 6.76 16
11 C -0.16 -5.31 6.74 -9.89 -0.07 -5.38 16
12 H 0.13 3.79 8.12 -2.38 -0.02 3.77 16
13 C -0.12 -3.55 5.39 -10.79 -0.06 -3.61 16
14 H 0.10 3.18 8.04 -2.39 -0.02 3.17 16
15 C 0.16 4.22 5.95 86.38 0.51 4.73 16
16 N -0.72 -16.47 5.51 -463.06 -2.55 -19.02 16
17 C 0.53 11.58 7.17 87.66 0.63 12.21 16
18 O -0.56 -15.11 15.46 -3.03 -0.05 -15.15 16
19 C -0.15 -2.21 3.32 -11.55 -0.04 -2.25 16
20 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16
21 C -0.11 -0.98 6.51 31.65 0.21 -0.78 16
22 C 0.10 0.75 7.78 86.83 0.68 1.43 16
23 N -0.72 -9.15 6.25 -459.37 -2.87 -12.02 16
24 C 0.52 10.04 7.72 87.85 0.68 10.72 16
25 O -0.56 -15.61 17.99 -3.03 -0.05 -15.67 16
26 C -0.17 -6.60 6.85 -9.89 -0.07 -6.67 16
27 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16
28 C 0.19 9.51 5.70 86.53 0.49 10.01 16
29 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16
30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16
31 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16
32 H 0.08 1.95 7.94 -2.39 -0.02 1.93 16
33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
34 H 0.41 9.11 8.37 -92.71 -0.78 8.33 16
35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16
36 H 0.10 1.14 6.94 -2.39 -0.02 1.13 16
37 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16
38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
39 H 0.42 4.22 8.96 -92.71 -0.83 3.38 16
40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16
41 H 0.05 3.10 6.52 -2.39 -0.02 3.09 16
Total: -1.00 -76.08 340.59 -1.23 -77.30
By element:
Atomic # 1 Polarization: 19.06 SS G_CDS: -0.54 Total: 18.52 kcal
Atomic # 6 Polarization: 6.03 SS G_CDS: 4.90 Total: 10.94 kcal
Atomic # 7 Polarization: -116.55 SS G_CDS: -7.51 Total: -124.06 kcal
Atomic # 8 Polarization: -30.72 SS G_CDS: -0.10 Total: -30.82 kcal
Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal
Total: -76.08 -1.23 -77.30 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978584169.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.559 kcal
(2) G-P(sol) polarization free energy of solvation -76.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.302 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.31 seconds