Wall clock time and date at job start Tue Mar 31 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30016 * 127.33780 * 2 1 4 4 O 1.20660 * 112.30510 * 179.72690 * 3 2 1 5 5 C 1.33498 * 113.15333 * 0.50098 * 4 3 2 6 6 C 1.50690 * 126.82669 * 179.78073 * 5 4 3 7 7 C 1.37362 * 106.33856 * 359.52257 * 5 4 3 8 8 C 1.47396 * 128.55963 * 180.22383 * 7 5 4 9 9 O 1.21606 * 120.00041 * 90.00017 * 8 7 5 10 10 N 1.34774 * 120.00139 * 270.00145 * 8 7 5 11 11 C 1.48218 * 119.97364 * 180.02562 * 10 8 7 12 12 C 1.47135 * 110.34326 * 102.46187 * 11 10 8 13 13 C 1.53794 * 111.84225 * 58.29727 * 12 11 10 14 14 N 1.43461 * 107.96347 * 281.67110 * 13 12 11 15 15 C 1.36939 * 118.94173 * 273.62526 * 14 13 12 16 16 H 1.07998 * 119.99716 * 29.14353 * 15 14 13 17 17 C 1.38811 * 120.00263 * 209.13770 * 15 14 13 18 18 N 1.31620 * 119.99908 * 10.97868 * 17 15 14 19 19 Si 1.86794 * 120.00197 * 190.97287 * 17 15 14 20 20 H 1.48509 * 109.47134 * 60.00343 * 19 17 15 21 21 H 1.48497 * 109.47268 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47535 * 300.00796 * 19 17 15 23 23 C 1.48857 * 122.11911 * 93.64950 * 14 13 12 24 24 C 1.43619 * 119.97137 * 359.72312 * 10 8 7 25 25 H 1.08998 * 109.47055 * 269.97202 * 1 2 3 26 26 H 1.09001 * 109.47529 * 29.97258 * 1 2 3 27 27 H 1.09004 * 109.47505 * 149.97158 * 1 2 3 28 28 H 1.09005 * 109.47216 * 269.69364 * 6 5 4 29 29 H 1.08998 * 109.47210 * 29.68885 * 6 5 4 30 30 H 1.09002 * 109.47470 * 149.69182 * 6 5 4 31 31 H 1.09002 * 109.32388 * 222.72823 * 11 10 8 32 32 H 1.08996 * 109.32138 * 342.36911 * 11 10 8 33 33 H 1.09002 * 109.00659 * 178.90743 * 12 11 10 34 34 H 1.08999 * 109.00897 * 297.76197 * 12 11 10 35 35 H 1.09001 * 109.75987 * 41.28865 * 13 12 11 36 36 H 1.08997 * 109.76401 * 162.00227 * 13 12 11 37 37 H 0.96999 * 120.00093 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.48103 * 80.58477 * 23 14 13 39 39 H 1.09005 * 109.48083 * 200.60963 * 23 14 13 40 40 H 1.09001 * 108.87638 * 31.47149 * 24 10 8 41 41 H 1.08999 * 108.87630 * 149.91358 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0053 5 6 3.6494 -0.6008 -0.0009 6 6 4.9711 -1.3245 -0.0015 7 6 2.3991 -1.1696 -0.0006 8 6 2.0400 -2.5991 -0.0016 9 8 1.8925 -3.1897 1.0511 10 7 1.8752 -3.2518 -1.1692 11 6 1.5136 -4.6892 -1.1695 12 6 0.0823 -4.8565 -1.4666 13 6 -0.2960 -4.2409 -2.8242 14 7 -0.4037 -2.8208 -2.6514 15 6 -1.5949 -2.2930 -2.2299 16 1 -2.2530 -2.8772 -1.6040 17 6 -1.9564 -1.0069 -2.6071 18 7 -1.2698 -0.3760 -3.5361 19 14 -3.4174 -0.1717 -1.7965 20 1 -3.1771 -0.0627 -0.3350 21 1 -3.5937 1.1857 -2.3722 22 1 -4.6433 -0.9744 -2.0379 23 6 0.7376 -1.9025 -2.9161 24 6 2.0438 -2.5523 -2.4122 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 5.2895 -1.4987 -1.0294 29 1 5.7174 -0.7186 0.5122 30 1 4.8626 -2.2798 0.5121 31 1 2.1022 -5.2090 -1.9255 32 1 1.7282 -5.1152 -0.1894 33 1 -0.1553 -5.9202 -1.4805 34 1 -0.5017 -4.3729 -0.6836 35 1 0.4773 -4.4653 -3.5589 36 1 -1.2510 -4.6457 -3.1591 37 1 -1.5226 0.5225 -3.7999 38 1 0.8125 -1.7151 -3.9873 39 1 0.5750 -0.9603 -2.3927 40 1 2.7917 -1.7707 -2.2783 41 1 2.4008 -3.2539 -3.1661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980688385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:40 Heat of formation + Delta-G solvation = 37.752635 kcal Electronic energy + Delta-G solvation = -25855.271952 eV Core-core repulsion = 22352.901246 eV Total energy + Delta-G solvation = -3502.370705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.92037 -41.15544 -38.58961 -35.97690 -35.72704 -34.67200 -33.93555 -32.72333 -29.87684 -29.41526 -28.82392 -27.19817 -25.59018 -25.39149 -23.12419 -21.50019 -21.21481 -20.22322 -19.03825 -18.76511 -18.12514 -17.62301 -17.27792 -16.77241 -16.07900 -15.73702 -15.55823 -15.04738 -14.87222 -14.53934 -14.42570 -14.29836 -14.00297 -13.87452 -13.76915 -13.52962 -13.40686 -13.34396 -13.09187 -12.75971 -12.52296 -12.36139 -12.11978 -12.05727 -11.70108 -11.65875 -11.39581 -11.21015 -10.85442 -10.48500 -10.32532 -9.61212 -8.55438 -7.82694 -5.28548 0.34571 0.86951 1.31744 1.39868 1.44444 1.47267 1.90828 2.24591 2.49848 3.06877 3.30569 3.32908 3.62701 3.76497 3.93965 4.12088 4.22440 4.30351 4.35462 4.45329 4.52575 4.55739 4.62167 4.62902 4.64894 4.73288 4.79346 4.86204 4.96494 5.08063 5.12214 5.17747 5.29134 5.32537 5.52055 5.65789 5.76043 5.79150 6.40124 6.45445 7.07108 7.22748 7.25485 7.98773 8.39451 9.20868 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.008545 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.991170 B = 3275.792967 C = 4402.149682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.055 3.945 3 N -0.380 5.380 4 O 0.101 5.899 5 C 0.024 3.976 6 C -0.073 4.073 7 C -0.264 4.264 8 C 0.605 3.395 9 O -0.575 6.575 10 N -0.568 5.568 11 C 0.126 3.874 12 C -0.157 4.157 13 C 0.157 3.843 14 N -0.602 5.602 15 C -0.253 4.253 16 H 0.051 0.949 17 C -0.018 4.018 18 N -0.922 5.922 19 Si 0.921 3.079 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.282 1.282 23 C 0.166 3.834 24 C 0.092 3.908 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.247 0.753 38 H 0.018 0.982 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -5.695 2.686 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 N -0.087 5.087 4 O 0.039 5.961 5 C -0.040 4.040 6 C -0.130 4.130 7 C -0.272 4.272 8 C 0.392 3.608 9 O -0.456 6.456 10 N -0.297 5.297 11 C 0.006 3.994 12 C -0.198 4.198 13 C 0.030 3.970 14 N -0.324 5.324 15 C -0.384 4.384 16 H 0.068 0.932 17 C -0.215 4.215 18 N -0.567 5.567 19 Si 0.751 3.249 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.208 1.208 23 C 0.040 3.960 24 C -0.033 4.033 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.234 -4.565 3.108 14.340 hybrid contribution -1.816 0.301 0.281 1.862 sum 11.418 -4.264 3.389 12.650 Atomic orbital electron populations 1.20348 0.85955 1.04954 1.02735 1.24746 0.98457 0.87166 1.00214 1.73559 0.89763 1.23640 1.21772 1.84463 1.20663 1.23263 1.67678 1.25324 0.98133 0.83172 0.97351 1.20705 0.86837 0.99007 1.06409 1.21886 0.93753 0.94939 1.16585 1.16985 0.76092 0.83974 0.83716 1.90717 1.53785 1.68699 1.32426 1.47430 1.65965 1.11230 1.05034 1.20822 0.96193 0.78964 1.03465 1.21699 0.96550 1.01338 1.00176 1.20461 0.98868 0.83690 0.93959 1.43794 1.08594 1.01740 1.78317 1.19137 0.97056 0.98554 1.23614 0.93172 1.25344 0.99154 0.99506 0.97451 1.70069 1.42299 1.13102 1.31266 0.86074 0.81698 0.77966 0.79186 1.20083 1.22135 1.20797 1.21678 0.84465 0.93039 0.96802 1.21894 0.98455 0.97378 0.85559 0.90261 0.91694 0.88669 0.86325 0.86465 0.88883 0.87638 0.90313 0.89185 0.95330 0.92436 0.94550 0.94358 0.96403 0.92928 0.90859 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.55 9.84 71.23 0.70 -2.85 16 2 C 0.06 2.21 7.06 45.15 0.32 2.53 16 3 N -0.38 -14.38 12.01 -44.77 -0.54 -14.92 16 4 O 0.10 3.17 11.06 76.94 0.85 4.02 16 5 C 0.02 0.67 7.23 25.48 0.18 0.85 16 6 C -0.07 -1.13 10.33 71.23 0.74 -0.39 16 7 C -0.26 -9.41 4.45 -18.75 -0.08 -9.50 16 8 C 0.61 22.55 7.46 86.66 0.65 23.20 16 9 O -0.58 -24.55 16.54 -4.05 -0.07 -24.62 16 10 N -0.57 -18.65 2.47 -836.22 -2.06 -20.71 16 11 C 0.13 3.56 5.70 84.22 0.48 4.04 16 12 C -0.16 -5.03 5.64 29.04 0.16 -4.86 16 13 C 0.16 5.77 5.63 87.21 0.49 6.26 16 14 N -0.60 -27.23 2.53 -699.11 -1.77 -29.00 16 15 C -0.25 -13.05 7.95 84.03 0.67 -12.38 16 16 H 0.05 2.67 7.85 -2.91 -0.02 2.65 16 17 C -0.02 -0.93 4.25 84.86 0.36 -0.57 16 18 N -0.92 -50.90 10.97 21.65 0.24 -50.66 16 19 Si 0.92 43.75 29.57 68.60 2.03 45.78 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 C 0.17 7.15 5.08 86.38 0.44 7.58 16 24 C 0.09 2.96 5.03 87.37 0.44 3.40 16 25 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.09 4.58 5.01 -2.39 -0.01 4.57 16 28 H 0.12 1.30 8.14 -2.38 -0.02 1.29 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 31 H 0.11 2.19 8.06 -2.39 -0.02 2.17 16 32 H 0.08 2.29 7.12 -2.39 -0.02 2.28 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 35 H 0.06 1.83 7.58 -2.39 -0.02 1.82 16 36 H 0.04 1.40 8.02 -2.39 -0.02 1.38 16 37 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.02 0.85 7.95 -2.38 -0.02 0.83 16 39 H 0.05 2.57 4.58 -2.38 -0.01 2.56 16 40 H 0.07 2.19 6.58 -2.39 -0.02 2.18 16 41 H 0.10 2.49 7.73 -2.39 -0.02 2.47 16 Total: -1.00 -67.09 327.64 5.27 -61.82 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.04 Total: 10.98 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.55 Total: 17.30 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.13 Total: -115.29 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.78 Total: -20.60 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -67.09 5.27 -61.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980688385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.574 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds