Wall clock time and date at job start Tue Mar 31 2020 03:40:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50703 * 109.47361 * 2 1
4 4 O 1.33493 * 126.82945 * 269.97529 * 3 2 1
5 5 N 1.20663 * 113.15008 * 179.74910 * 4 3 2
6 6 C 1.30009 * 112.30753 * 0.46353 * 5 4 3
7 7 C 1.37359 * 126.82741 * 90.00140 * 3 2 1
8 8 C 1.47399 * 128.56539 * 359.94814 * 7 3 2
9 9 O 1.21619 * 119.99920 * 6.19461 * 8 7 3
10 10 N 1.34775 * 120.00155 * 186.19797 * 8 7 3
11 11 C 1.48216 * 119.96983 * 184.76826 * 10 8 7
12 12 C 1.47721 * 110.06501 * 102.59100 * 11 10 8
13 13 C 1.53799 * 111.83223 * 58.37166 * 12 11 10
14 14 N 1.43473 * 107.95741 * 281.59585 * 13 12 11
15 15 C 1.36941 * 118.93616 * 273.63594 * 14 13 12
16 16 H 1.07995 * 120.00476 * 24.30347 * 15 14 13
17 17 C 1.38814 * 119.99482 * 204.31007 * 15 14 13
18 18 N 1.31620 * 120.00309 * 17.58078 * 17 15 14
19 19 Si 1.86802 * 119.99784 * 197.58903 * 17 15 14
20 20 H 1.48495 * 109.46899 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47175 * 119.99771 * 19 17 15
22 22 H 1.48495 * 109.46983 * 239.99404 * 19 17 15
23 23 C 1.48856 * 122.12124 * 93.65670 * 14 13 12
24 24 C 1.43620 * 119.96850 * 5.04760 * 10 8 7
25 25 H 1.09005 * 109.47203 * 59.99349 * 1 2 3
26 26 H 1.08992 * 109.47348 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47197 * 300.00278 * 1 2 3
28 28 H 1.09003 * 109.46729 * 240.00328 * 2 1 3
29 29 H 1.08995 * 109.47385 * 120.00663 * 2 1 3
30 30 H 1.07996 * 127.33862 * 179.83755 * 6 5 4
31 31 H 1.08992 * 109.32449 * 222.78054 * 11 10 8
32 32 H 1.08999 * 109.32757 * 342.24994 * 11 10 8
33 33 H 1.08992 * 109.06582 * 297.72763 * 12 11 10
34 34 H 1.08996 * 108.89396 * 178.89483 * 12 11 10
35 35 H 1.09000 * 109.76319 * 161.98324 * 13 12 11
36 36 H 1.08998 * 109.81132 * 41.23537 * 13 12 11
37 37 H 0.96996 * 120.00274 * 179.97438 * 18 17 15
38 38 H 1.08996 * 109.47813 * 200.61696 * 23 14 13
39 39 H 1.08997 * 109.49198 * 80.58715 * 23 14 13
40 40 H 1.08999 * 108.87348 * 31.41722 * 24 10 8
41 41 H 1.09002 * 108.87447 * 149.96412 * 24 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 2.2996 2.1751 -1.0685
5 7 2.6857 3.2821 -0.7832
6 6 2.7556 3.4643 0.5022
7 6 2.3069 2.1971 1.0995
8 6 2.1820 1.8469 2.5258
9 8 1.8992 0.7094 2.8502
10 7 2.3811 2.7873 3.4705
11 6 2.3599 2.4126 4.9044
12 6 3.7389 2.3331 5.4279
13 6 4.4909 3.6645 5.2629
14 7 4.9186 3.7647 3.8970
15 6 6.1111 3.1984 3.5329
16 1 6.5202 2.3825 4.1103
17 6 6.7943 3.6733 2.4218
18 7 6.5020 4.8569 1.9258
19 14 8.1282 2.6324 1.6303
20 1 8.2637 1.3534 2.3725
21 1 7.7635 2.3499 0.2188
22 1 9.4183 3.3667 1.6706
23 6 4.1081 4.4646 2.8632
24 6 2.6076 4.1527 3.0871
25 1 -0.3634 0.5140 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5139 0.8900
28 1 1.8932 -0.5138 -0.8901
29 1 1.8933 -0.5139 0.8899
30 1 3.0711 4.3574 1.0210
31 1 1.8024 3.1628 5.4650
32 1 1.8711 1.4449 5.0171
33 1 4.2785 1.5519 4.8926
34 1 3.7003 2.0761 6.4864
35 1 5.3582 3.6822 5.9229
36 1 3.8279 4.4955 5.5033
37 1 6.9796 5.1889 1.1495
38 1 4.4070 4.1209 1.8729
39 1 4.2712 5.5396 2.9394
40 1 2.0640 4.3546 2.1641
41 1 2.2261 4.8071 3.8710
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000982056270.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:50
Heat of formation + Delta-G solvation = 73.744776 kcal
Electronic energy + Delta-G solvation = -25458.706061 eV
Core-core repulsion = 21957.896092 eV
Total energy + Delta-G solvation = -3500.809969 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-44.59415 -39.75280 -37.10208 -34.63046 -34.34831 -33.82403 -32.23904 -30.92994
-30.06083 -27.92157 -25.88159 -24.39582 -23.90936 -23.65553 -22.49315 -20.57033
-19.82751 -18.73054 -17.50267 -17.36310 -16.87767 -16.08394 -15.97477 -15.10564
-14.66611 -14.40494 -14.30450 -14.03171 -13.64521 -13.42869 -13.06144 -12.88987
-12.57054 -12.38169 -12.31823 -11.76099 -11.63240 -11.45897 -11.33339 -11.07872
-10.79435 -10.75666 -10.58823 -10.40675 -10.26284 -10.04838 -9.77546 -9.75120
-9.54984 -9.17030 -8.51723 -8.11856 -6.77960 -5.86130 -3.25373 1.36703
2.17731 3.05708 3.34272 3.41906 3.43672 3.45329 3.62468 4.46488
4.59832 4.63953 4.89438 5.02186 5.17216 5.19622 5.21993 5.33950
5.40799 5.54389 5.59147 5.71600 5.81329 5.81807 5.87061 5.98577
6.00398 6.07546 6.16040 6.18936 6.24292 6.38495 6.46938 6.76627
6.81392 6.97147 7.23144 7.31467 7.76593 7.84802 8.37079 8.48542
8.55928 9.14064 9.82259 10.26653 11.22510
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.013649 B = 0.007665 C = 0.006013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2050.907674 B = 3652.164468 C = 4655.084583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.047 4.047
3 C 0.035 3.965
4 O 0.086 5.914
5 N -0.362 5.362
6 C 0.018 3.982
7 C -0.249 4.249
8 C 0.604 3.396
9 O -0.551 6.551
10 N -0.574 5.574
11 C 0.131 3.869
12 C -0.170 4.170
13 C 0.162 3.838
14 N -0.587 5.587
15 C -0.252 4.252
16 H 0.066 0.934
17 C 0.005 3.995
18 N -0.906 5.906
19 Si 0.894 3.106
20 H -0.278 1.278
21 H -0.289 1.289
22 H -0.289 1.289
23 C 0.148 3.852
24 C 0.060 3.940
25 H 0.056 0.944
26 H 0.068 0.932
27 H 0.061 0.939
28 H 0.086 0.914
29 H 0.114 0.886
30 H 0.223 0.777
31 H 0.063 0.937
32 H 0.080 0.920
33 H 0.069 0.931
34 H 0.057 0.943
35 H 0.047 0.953
36 H 0.034 0.966
37 H 0.254 0.746
38 H 0.086 0.914
39 H 0.046 0.954
40 H 0.075 0.925
41 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.197 -4.141 0.073 12.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.085 4.085
3 C -0.029 4.029
4 O 0.027 5.973
5 N -0.068 5.068
6 C -0.164 4.164
7 C -0.256 4.256
8 C 0.393 3.607
9 O -0.432 6.432
10 N -0.304 5.304
11 C 0.010 3.990
12 C -0.211 4.211
13 C 0.033 3.967
14 N -0.308 5.308
15 C -0.382 4.382
16 H 0.084 0.916
17 C -0.193 4.193
18 N -0.551 5.551
19 Si 0.724 3.276
20 H -0.203 1.203
21 H -0.216 1.216
22 H -0.216 1.216
23 C 0.022 3.978
24 C -0.066 4.066
25 H 0.075 0.925
26 H 0.087 0.913
27 H 0.080 0.920
28 H 0.105 0.895
29 H 0.132 0.868
30 H 0.239 0.761
31 H 0.082 0.918
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.076 0.924
35 H 0.066 0.934
36 H 0.053 0.947
37 H 0.064 0.936
38 H 0.104 0.896
39 H 0.064 0.936
40 H 0.093 0.907
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -12.020 -3.867 -0.947 12.662
hybrid contribution 0.998 -0.487 0.277 1.144
sum -11.022 -4.354 -0.671 11.870
Atomic orbital electron populations
1.21691 0.93308 1.02604 1.02398 1.20321 0.96787 0.85929 1.05457
1.24769 0.96597 0.96047 0.85502 1.84530 1.61599 1.17783 1.33375
1.73663 1.16825 0.98258 1.18059 1.27593 0.99172 1.00496 0.89093
1.22064 1.12745 0.95345 0.95410 1.16729 0.76372 0.84478 0.83145
1.90691 1.50430 1.19887 1.82194 1.47091 1.68877 1.08200 1.06187
1.20724 0.97983 1.01055 0.79257 1.21996 0.96612 1.03184 0.99356
1.20306 0.96249 0.92863 0.87254 1.43568 1.20120 1.64764 1.02361
1.19195 0.96981 1.11022 1.10983 0.91620 1.24904 0.98107 0.95617
1.00641 1.70005 1.43969 1.15794 1.25359 0.86345 0.81627 0.80189
0.79470 1.20271 1.21589 1.21613 1.22212 0.84508 0.96274 0.94817
1.22663 1.01021 0.82254 1.00635 0.92486 0.91268 0.92003 0.89521
0.86816 0.76082 0.91846 0.90112 0.91262 0.92447 0.93422 0.94743
0.93630 0.89601 0.93617 0.90707 0.91397
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16
2 C -0.05 -0.59 6.11 -27.88 -0.17 -0.76 16
3 C 0.04 0.57 6.80 -34.63 -0.24 0.34 16
4 O 0.09 1.45 11.06 18.65 0.21 1.66 16
5 N -0.36 -6.72 12.01 31.81 0.38 -6.34 16
6 C 0.02 0.33 9.01 -14.73 -0.13 0.20 16
7 C -0.25 -4.54 6.17 -102.89 -0.63 -5.18 16
8 C 0.60 11.53 7.66 -12.53 -0.10 11.44 16
9 O -0.55 -11.11 14.64 5.26 0.08 -11.03 16
10 N -0.57 -10.21 2.45 -177.62 -0.43 -10.64 16
11 C 0.13 2.09 5.77 -5.65 -0.03 2.06 16
12 C -0.17 -2.95 5.66 -28.87 -0.16 -3.11 16
13 C 0.16 3.14 5.63 -5.23 -0.03 3.11 16
14 N -0.59 -13.66 2.54 -171.99 -0.44 -14.10 16
15 C -0.25 -6.71 9.26 -15.06 -0.14 -6.85 16
16 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16
17 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16
18 N -0.91 -25.24 11.05 55.49 0.61 -24.63 16
19 Si 0.89 22.05 29.59 -169.99 -5.03 17.02 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16
23 C 0.15 3.17 4.29 -1.75 -0.01 3.16 16
24 C 0.06 1.02 4.70 -4.57 -0.02 0.99 16
25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16
29 H 0.11 1.61 6.68 -51.93 -0.35 1.27 16
30 H 0.22 4.03 3.66 -52.49 -0.19 3.84 16
31 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16
32 H 0.08 1.30 7.08 -51.93 -0.37 0.93 16
33 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16
34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
35 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16
36 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16
37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
38 H 0.09 2.06 4.00 -51.93 -0.21 1.85 16
39 H 0.05 1.04 8.01 -51.93 -0.42 0.62 16
40 H 0.08 1.17 4.68 -51.93 -0.24 0.92 16
41 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16
LS Contribution 320.79 15.07 4.83 4.83
Total: -1.00 -30.54 320.79 -6.65 -37.18
By element:
Atomic # 1 Polarization: 7.20 SS G_CDS: -5.48 Total: 1.72 kcal
Atomic # 6 Polarization: 5.70 SS G_CDS: -1.38 Total: 4.32 kcal
Atomic # 7 Polarization: -55.83 SS G_CDS: 0.12 Total: -55.71 kcal
Atomic # 8 Polarization: -9.65 SS G_CDS: 0.28 Total: -9.37 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -30.54 -6.65 -37.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982056270.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.928 kcal
(2) G-P(sol) polarization free energy of solvation -30.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.745 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds