Wall clock time and date at job start Tue Mar 31 2020 03:40:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50703 * 109.47361 * 2 1
4 4 O 1.33493 * 126.82945 * 269.97529 * 3 2 1
5 5 N 1.20663 * 113.15008 * 179.74910 * 4 3 2
6 6 C 1.30009 * 112.30753 * 0.46353 * 5 4 3
7 7 C 1.37359 * 126.82741 * 90.00140 * 3 2 1
8 8 C 1.47399 * 128.56539 * 359.94814 * 7 3 2
9 9 O 1.21619 * 119.99920 * 6.19461 * 8 7 3
10 10 N 1.34775 * 120.00155 * 186.19797 * 8 7 3
11 11 C 1.48216 * 119.96983 * 184.76826 * 10 8 7
12 12 C 1.47721 * 110.06501 * 102.59100 * 11 10 8
13 13 C 1.53799 * 111.83223 * 58.37166 * 12 11 10
14 14 N 1.43473 * 107.95741 * 281.59585 * 13 12 11
15 15 C 1.36941 * 118.93616 * 273.63594 * 14 13 12
16 16 H 1.07995 * 120.00476 * 24.30347 * 15 14 13
17 17 C 1.38814 * 119.99482 * 204.31007 * 15 14 13
18 18 N 1.31620 * 120.00309 * 17.58078 * 17 15 14
19 19 Si 1.86802 * 119.99784 * 197.58903 * 17 15 14
20 20 H 1.48495 * 109.46899 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47175 * 119.99771 * 19 17 15
22 22 H 1.48495 * 109.46983 * 239.99404 * 19 17 15
23 23 C 1.48856 * 122.12124 * 93.65670 * 14 13 12
24 24 C 1.43620 * 119.96850 * 5.04760 * 10 8 7
25 25 H 1.09005 * 109.47203 * 59.99349 * 1 2 3
26 26 H 1.08992 * 109.47348 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47197 * 300.00278 * 1 2 3
28 28 H 1.09003 * 109.46729 * 240.00328 * 2 1 3
29 29 H 1.08995 * 109.47385 * 120.00663 * 2 1 3
30 30 H 1.07996 * 127.33862 * 179.83755 * 6 5 4
31 31 H 1.08992 * 109.32449 * 222.78054 * 11 10 8
32 32 H 1.08999 * 109.32757 * 342.24994 * 11 10 8
33 33 H 1.08992 * 109.06582 * 297.72763 * 12 11 10
34 34 H 1.08996 * 108.89396 * 178.89483 * 12 11 10
35 35 H 1.09000 * 109.76319 * 161.98324 * 13 12 11
36 36 H 1.08998 * 109.81132 * 41.23537 * 13 12 11
37 37 H 0.96996 * 120.00274 * 179.97438 * 18 17 15
38 38 H 1.08996 * 109.47813 * 200.61696 * 23 14 13
39 39 H 1.08997 * 109.49198 * 80.58715 * 23 14 13
40 40 H 1.08999 * 108.87348 * 31.41722 * 24 10 8
41 41 H 1.09002 * 108.87447 * 149.96412 * 24 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 2.2996 2.1751 -1.0685
5 7 2.6857 3.2821 -0.7832
6 6 2.7556 3.4643 0.5022
7 6 2.3069 2.1971 1.0995
8 6 2.1820 1.8469 2.5258
9 8 1.8992 0.7094 2.8502
10 7 2.3811 2.7873 3.4705
11 6 2.3599 2.4126 4.9044
12 6 3.7389 2.3331 5.4279
13 6 4.4909 3.6645 5.2629
14 7 4.9186 3.7647 3.8970
15 6 6.1111 3.1984 3.5329
16 1 6.5202 2.3825 4.1103
17 6 6.7943 3.6733 2.4218
18 7 6.5020 4.8569 1.9258
19 14 8.1282 2.6324 1.6303
20 1 8.2637 1.3534 2.3725
21 1 7.7635 2.3499 0.2188
22 1 9.4183 3.3667 1.6706
23 6 4.1081 4.4646 2.8632
24 6 2.6076 4.1527 3.0871
25 1 -0.3634 0.5140 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5139 0.8900
28 1 1.8932 -0.5138 -0.8901
29 1 1.8933 -0.5139 0.8899
30 1 3.0711 4.3574 1.0210
31 1 1.8024 3.1628 5.4650
32 1 1.8711 1.4449 5.0171
33 1 4.2785 1.5519 4.8926
34 1 3.7003 2.0761 6.4864
35 1 5.3582 3.6822 5.9229
36 1 3.8279 4.4955 5.5033
37 1 6.9796 5.1889 1.1495
38 1 4.4070 4.1209 1.8729
39 1 4.2712 5.5396 2.9394
40 1 2.0640 4.3546 2.1641
41 1 2.2261 4.8071 3.8710
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000982056270.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:47
Heat of formation + Delta-G solvation = 55.758150 kcal
Electronic energy + Delta-G solvation = -25459.486019 eV
Core-core repulsion = 21957.896092 eV
Total energy + Delta-G solvation = -3501.589928 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 2.18 seconds
Orbital eigenvalues (eV)
-45.98657 -41.19303 -38.66875 -36.09430 -35.70597 -35.24589 -33.78481 -32.72204
-31.27700 -29.53662 -27.47187 -25.81411 -25.55630 -24.94679 -23.83424 -22.00312
-21.44674 -20.13547 -19.08152 -18.79400 -18.36570 -17.59750 -17.46481 -16.80088
-16.09289 -16.05684 -15.67710 -15.37330 -15.26240 -14.65333 -14.54468 -14.41114
-14.00511 -13.87501 -13.52846 -13.18551 -13.10658 -12.89758 -12.82367 -12.54149
-12.46026 -12.29656 -12.17339 -11.89620 -11.86274 -11.69745 -11.46126 -11.26405
-11.02672 -10.51714 -10.50390 -9.56612 -8.68561 -7.90619 -5.29609 0.03570
0.74857 1.34371 1.39915 1.46445 1.74835 2.07247 2.21330 2.46022
3.22728 3.24712 3.30888 3.54745 3.65497 3.80329 4.09072 4.17624
4.20192 4.27324 4.28786 4.37398 4.47145 4.57806 4.64835 4.71260
4.82788 4.84000 4.92975 4.97961 5.05544 5.12732 5.21904 5.25647
5.30446 5.48995 5.55555 5.65808 5.75977 6.35740 6.42254 7.08361
7.15178 7.16471 7.93195 8.30311 9.13997
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.013649 B = 0.007665 C = 0.006013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2050.907674 B = 3652.164468 C = 4655.084583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.047 4.047
3 C 0.049 3.951
4 O 0.091 5.909
5 N -0.379 5.379
6 C 0.013 3.987
7 C -0.276 4.276
8 C 0.598 3.402
9 O -0.568 6.568
10 N -0.576 5.576
11 C 0.128 3.872
12 C -0.155 4.155
13 C 0.156 3.844
14 N -0.601 5.601
15 C -0.251 4.251
16 H 0.055 0.945
17 C -0.039 4.039
18 N -0.925 5.925
19 Si 0.939 3.061
20 H -0.275 1.275
21 H -0.299 1.299
22 H -0.288 1.288
23 C 0.153 3.847
24 C 0.072 3.928
25 H 0.067 0.933
26 H 0.094 0.906
27 H 0.044 0.956
28 H 0.115 0.885
29 H 0.099 0.901
30 H 0.221 0.779
31 H 0.102 0.898
32 H 0.081 0.919
33 H 0.028 0.972
34 H 0.090 0.910
35 H 0.037 0.963
36 H 0.060 0.940
37 H 0.248 0.752
38 H 0.058 0.942
39 H 0.028 0.972
40 H 0.089 0.911
41 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.882 -4.847 0.663 14.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.085 4.085
3 C -0.015 4.015
4 O 0.033 5.967
5 N -0.086 5.086
6 C -0.168 4.168
7 C -0.283 4.283
8 C 0.387 3.613
9 O -0.450 6.450
10 N -0.305 5.305
11 C 0.007 3.993
12 C -0.196 4.196
13 C 0.029 3.971
14 N -0.323 5.323
15 C -0.382 4.382
16 H 0.072 0.928
17 C -0.235 4.235
18 N -0.572 5.572
19 Si 0.769 3.231
20 H -0.200 1.200
21 H -0.226 1.226
22 H -0.215 1.215
23 C 0.027 3.973
24 C -0.054 4.054
25 H 0.086 0.914
26 H 0.112 0.888
27 H 0.063 0.937
28 H 0.133 0.867
29 H 0.118 0.882
30 H 0.237 0.763
31 H 0.120 0.880
32 H 0.100 0.900
33 H 0.047 0.953
34 H 0.109 0.891
35 H 0.056 0.944
36 H 0.079 0.921
37 H 0.057 0.943
38 H 0.076 0.924
39 H 0.046 0.954
40 H 0.107 0.893
41 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -13.717 -4.572 -0.321 14.463
hybrid contribution 1.519 -0.311 0.138 1.556
sum -12.199 -4.883 -0.183 13.141
Atomic orbital electron populations
1.21673 0.91353 1.04190 1.02113 1.20536 0.98283 0.83616 1.06093
1.25435 0.94532 0.96938 0.84626 1.84510 1.61285 1.17433 1.33501
1.73636 1.17599 0.99146 1.18187 1.27602 0.99269 1.00749 0.89217
1.22164 1.14543 0.95833 0.95787 1.16914 0.76241 0.84517 0.83631
1.90670 1.51376 1.20418 1.82525 1.47241 1.68218 1.08169 1.06874
1.20908 0.97382 1.02502 0.78473 1.21793 0.96551 1.00245 1.00992
1.20498 0.96647 0.94883 0.85103 1.43804 1.19572 1.64642 1.04298
1.19329 0.97975 1.10319 1.10541 0.92756 1.25378 1.00017 0.96534
1.01542 1.70108 1.44846 1.16660 1.25550 0.85627 0.80102 0.79273
0.78122 1.19959 1.22622 1.21476 1.22046 0.87188 0.94851 0.93186
1.22479 0.97756 0.82514 1.02627 0.91357 0.88769 0.93660 0.86692
0.88244 0.76315 0.88037 0.90029 0.95322 0.89121 0.94412 0.92137
0.94278 0.92376 0.95358 0.89277 0.88296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.56 9.89 71.98 0.71 -1.84 16
2 C -0.05 -1.11 6.11 29.85 0.18 -0.93 16
3 C 0.05 1.55 6.80 25.48 0.17 1.73 16
4 O 0.09 3.02 11.06 76.98 0.85 3.87 16
5 N -0.38 -14.05 12.01 -54.18 -0.65 -14.70 16
6 C 0.01 0.47 9.01 87.29 0.79 1.26 16
7 C -0.28 -9.97 6.17 -18.74 -0.12 -10.08 16
8 C 0.60 22.33 7.66 86.66 0.66 22.99 16
9 O -0.57 -22.44 14.64 -4.09 -0.06 -22.50 16
10 N -0.58 -19.49 2.45 -834.11 -2.04 -21.53 16
11 C 0.13 3.70 5.77 84.40 0.49 4.19 16
12 C -0.16 -5.04 5.66 29.21 0.17 -4.88 16
13 C 0.16 5.79 5.63 87.21 0.49 6.28 16
14 N -0.60 -27.84 2.54 -698.04 -1.77 -29.61 16
15 C -0.25 -13.50 9.26 84.03 0.78 -12.72 16
16 H 0.05 2.99 7.89 -2.91 -0.02 2.97 16
17 C -0.04 -2.15 4.87 84.86 0.41 -1.74 16
18 N -0.92 -52.54 11.05 21.65 0.24 -52.30 16
19 Si 0.94 46.06 29.59 68.60 2.03 48.09 16
20 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16
21 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16
22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
23 C 0.15 6.55 4.29 86.57 0.37 6.92 16
24 C 0.07 2.31 4.70 87.56 0.41 2.72 16
25 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16
26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
27 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16
28 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16
29 H 0.10 2.71 6.68 -2.39 -0.02 2.69 16
30 H 0.22 8.10 3.66 -2.91 -0.01 8.09 16
31 H 0.10 2.23 8.05 -2.39 -0.02 2.21 16
32 H 0.08 2.41 7.08 -2.39 -0.02 2.39 16
33 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16
34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
35 H 0.04 1.46 8.02 -2.39 -0.02 1.44 16
36 H 0.06 1.94 7.59 -2.39 -0.02 1.93 16
37 H 0.25 13.91 8.31 -92.71 -0.77 13.13 16
38 H 0.06 2.84 4.00 -2.39 -0.01 2.83 16
39 H 0.03 1.30 8.01 -2.39 -0.02 1.28 16
40 H 0.09 2.66 4.68 -2.39 -0.01 2.65 16
41 H 0.10 2.60 7.72 -2.39 -0.02 2.59 16
Total: -1.00 -66.85 320.79 5.17 -61.68
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: 1.05 Total: 13.10 kcal
Atomic # 6 Polarization: 8.37 SS G_CDS: 5.52 Total: 13.89 kcal
Atomic # 7 Polarization: -113.91 SS G_CDS: -4.22 Total: -118.14 kcal
Atomic # 8 Polarization: -19.42 SS G_CDS: 0.79 Total: -18.63 kcal
Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal
Total: -66.85 5.17 -61.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982056270.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.438 kcal
(2) G-P(sol) polarization free energy of solvation -66.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.588 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.758 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.18 seconds