Wall clock time and date at job start Tue Mar 31 2020 03:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47353 * 2 1 4 4 C 1.35314 * 126.66364 * 89.99956 * 3 2 1 5 5 C 1.42272 * 103.92269 * 179.97438 * 4 3 2 6 6 C 1.48335 * 126.94226 * 180.02562 * 5 4 3 7 7 O 1.21491 * 119.99533 * 6.19549 * 6 5 4 8 8 N 1.34773 * 119.99992 * 186.19715 * 6 5 4 9 9 C 1.48217 * 119.96592 * 185.82474 * 8 6 5 10 10 C 1.47138 * 110.34200 * 102.47192 * 9 8 6 11 11 C 1.53796 * 111.83988 * 58.29404 * 10 9 8 12 12 N 1.43461 * 107.96022 * 281.66508 * 11 10 9 13 13 C 1.36932 * 118.94432 * 273.61131 * 12 11 10 14 14 H 1.08006 * 119.99971 * 22.78057 * 13 12 11 15 15 C 1.38821 * 120.00356 * 202.78113 * 13 12 11 16 16 N 1.31611 * 119.99858 * 208.22717 * 15 13 12 17 17 Si 1.86792 * 119.99661 * 28.22247 * 15 13 12 18 18 H 1.48503 * 109.47258 * 266.58356 * 17 15 13 19 19 H 1.48505 * 109.47204 * 146.58210 * 17 15 13 20 20 H 1.48502 * 109.47149 * 26.58355 * 17 15 13 21 21 C 1.48863 * 122.11815 * 93.89133 * 12 11 10 22 22 C 1.43614 * 119.97240 * 5.80790 * 8 6 5 23 23 N 1.30984 * 106.12273 * 0.26280 * 5 4 3 24 24 O 1.20906 * 111.43982 * 359.53321 * 23 5 4 25 25 H 1.08995 * 109.46776 * 299.99789 * 1 2 3 26 26 H 1.09004 * 109.47207 * 59.99824 * 1 2 3 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46795 * 240.00124 * 2 1 3 29 29 H 1.08998 * 109.47628 * 120.00316 * 2 1 3 30 30 H 1.08000 * 128.03911 * 359.96015 * 4 3 2 31 31 H 1.09000 * 109.32554 * 342.20112 * 9 8 6 32 32 H 1.09000 * 109.18432 * 222.64699 * 9 8 6 33 33 H 1.09006 * 109.00157 * 297.69006 * 10 9 8 34 34 H 1.08994 * 109.00963 * 178.90409 * 10 9 8 35 35 H 1.09008 * 109.76092 * 162.05387 * 11 10 9 36 36 H 1.08993 * 109.80952 * 41.31253 * 11 10 9 37 37 H 0.97008 * 120.00896 * 5.08860 * 16 15 13 38 38 H 1.09003 * 109.47817 * 80.34654 * 21 12 11 39 39 H 1.09003 * 109.48108 * 200.37873 * 21 12 11 40 40 H 1.08999 * 108.87816 * 31.46178 * 22 8 6 41 41 H 1.09001 * 108.87549 * 149.90575 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3017 2.1825 1.0854 5 6 2.7397 3.4194 0.5355 6 6 3.1674 4.6264 1.2842 7 8 3.2733 4.5849 2.4938 8 7 3.4383 5.7689 0.6227 9 6 3.9886 6.9349 1.3537 10 6 5.4344 7.0562 1.1090 11 6 5.7506 7.2046 -0.3888 12 7 5.6648 5.9048 -0.9899 13 6 6.7673 5.0929 -0.9735 14 1 7.5379 5.2435 -0.2319 15 6 6.8948 4.0763 -1.9102 16 7 7.5812 2.9927 -1.6159 17 14 6.0918 4.2465 -3.5882 18 1 4.7478 3.6155 -3.5601 19 1 6.9333 3.5736 -4.6102 20 1 5.9560 5.6856 -3.9283 21 6 4.4174 5.4126 -1.6362 22 6 3.1939 5.8553 -0.7898 23 7 2.6843 3.2789 -0.7657 24 8 2.2998 2.1751 -1.0750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2062 1.9141 2.1272 31 1 3.8130 6.8067 2.4218 32 1 3.4877 7.8408 1.0121 33 1 5.9349 6.1665 1.4911 34 1 5.8122 7.9300 1.6398 35 1 6.7573 7.6033 -0.5152 36 1 5.0279 7.8745 -0.8543 37 1 7.9357 2.8710 -0.7212 38 1 4.3391 5.8298 -2.6402 39 1 4.4437 4.3245 -1.6957 40 1 2.3436 5.2209 -1.0401 41 1 2.9484 6.8868 -1.0427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989511525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:54 Heat of formation + Delta-G solvation = 67.349394 kcal Electronic energy + Delta-G solvation = -25208.183334 eV Core-core repulsion = 21707.096040 eV Total energy + Delta-G solvation = -3501.087294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.83302 -39.80331 -37.20260 -34.93821 -34.42429 -33.86811 -32.46466 -31.36461 -30.05029 -27.79734 -26.12289 -24.56971 -24.10961 -23.13166 -22.44577 -21.34511 -19.83025 -18.71274 -17.56200 -17.31543 -17.16819 -16.50520 -15.97348 -15.15755 -14.78221 -14.66538 -14.46027 -13.93185 -13.79773 -13.42179 -13.33580 -13.08087 -12.88484 -12.73263 -12.40397 -12.11343 -11.94404 -11.62470 -11.52331 -11.31102 -10.91702 -10.80084 -10.43025 -10.30086 -10.16882 -9.98639 -9.80872 -9.74754 -9.25966 -9.17561 -8.41345 -8.23212 -6.94974 -6.30015 -3.20895 1.41695 1.86835 3.04339 3.20571 3.49093 3.53519 3.57021 3.71833 4.21763 4.49702 4.66190 4.87928 4.99247 5.00628 5.06242 5.20889 5.27510 5.41843 5.44610 5.47061 5.58247 5.61425 5.62231 5.78520 5.82237 5.86462 5.92863 5.96905 6.05216 6.17114 6.28563 6.33674 6.50353 6.68990 6.76105 6.85780 7.08250 7.67225 8.09223 8.21930 8.43665 8.49800 9.07616 9.73256 10.19447 11.14279 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.007527 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.550842 B = 3719.099595 C = 4953.369190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.037 4.037 4 C -0.183 4.183 5 C -0.019 4.019 6 C 0.604 3.396 7 O -0.539 6.539 8 N -0.570 5.570 9 C 0.130 3.870 10 C -0.170 4.170 11 C 0.161 3.839 12 N -0.599 5.599 13 C -0.352 4.352 14 H 0.066 0.934 15 C -0.006 4.006 16 N -0.911 5.911 17 Si 1.039 2.961 18 H -0.289 1.289 19 H -0.300 1.300 20 H -0.288 1.288 21 C 0.110 3.890 22 C 0.089 3.911 23 N -0.313 5.313 24 O 0.120 5.880 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.176 0.824 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.033 0.967 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -0.617 3.009 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C -0.100 4.100 4 C -0.205 4.205 5 C -0.178 4.178 6 C 0.390 3.610 7 O -0.416 6.416 8 N -0.301 5.301 9 C 0.009 3.991 10 C -0.211 4.211 11 C 0.033 3.967 12 N -0.322 5.322 13 C -0.480 4.480 14 H 0.084 0.916 15 C -0.208 4.208 16 N -0.550 5.550 17 Si 0.870 3.130 18 H -0.216 1.216 19 H -0.228 1.228 20 H -0.215 1.215 21 C -0.016 4.016 22 C -0.037 4.037 23 N -0.015 5.015 24 O 0.045 5.955 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.193 0.807 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.050 -0.452 1.192 15.104 hybrid contribution 0.318 0.458 2.130 2.201 sum -14.732 0.006 3.321 15.102 Atomic orbital electron populations 1.21796 0.93611 1.02546 1.02802 1.20113 0.96414 0.86448 1.05006 1.24422 1.02692 0.97176 0.85716 1.22316 1.05122 0.91897 1.01165 1.23387 1.06288 0.97963 0.90128 1.16881 0.77105 0.81069 0.85959 1.90713 1.54368 1.83511 1.12997 1.47212 1.61580 1.12448 1.08846 1.20672 0.94895 0.86240 0.97262 1.21844 0.95614 1.02003 1.01655 1.20326 0.98964 0.87333 0.90105 1.43991 1.08259 1.13084 1.66855 1.20156 1.00567 1.12805 1.14486 0.91630 1.26019 0.99158 0.92863 1.02772 1.70851 1.37294 1.23562 1.23261 0.84191 0.75581 0.75266 0.77950 1.21622 1.22753 1.21456 1.22587 0.84940 1.00546 0.93520 1.22081 0.99626 1.01573 0.80382 1.74403 1.12876 0.98665 1.15516 1.84820 1.59737 1.17432 1.33511 0.92145 0.92019 0.91357 0.89047 0.88473 0.80689 0.89932 0.91530 0.91179 0.92113 0.93041 0.94708 0.92697 0.94897 0.89611 0.89852 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.04 -0.38 6.50 -27.88 -0.18 -0.56 16 3 C -0.04 -0.51 6.73 -35.35 -0.24 -0.75 16 4 C -0.18 -2.87 10.93 -39.08 -0.43 -3.29 16 5 C -0.02 -0.37 6.77 -82.52 -0.56 -0.92 16 6 C 0.60 12.51 7.68 -12.11 -0.09 12.42 16 7 O -0.54 -11.97 16.38 5.37 0.09 -11.89 16 8 N -0.57 -10.98 2.46 -177.37 -0.44 -11.42 16 9 C 0.13 2.21 5.73 -5.91 -0.03 2.17 16 10 C -0.17 -3.15 5.64 -29.13 -0.16 -3.31 16 11 C 0.16 3.27 5.63 -5.24 -0.03 3.24 16 12 N -0.60 -14.68 2.34 -171.77 -0.40 -15.08 16 13 C -0.35 -10.15 9.51 -15.06 -0.14 -10.29 16 14 H 0.07 2.04 8.06 -52.48 -0.42 1.62 16 15 C -0.01 -0.19 5.03 -17.43 -0.09 -0.27 16 16 N -0.91 -28.94 13.70 55.49 0.76 -28.17 16 17 Si 1.04 26.91 24.53 -169.99 -4.17 22.74 16 18 H -0.29 -7.13 6.71 56.52 0.38 -6.75 16 19 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 20 H -0.29 -7.11 6.81 56.52 0.38 -6.72 16 21 C 0.11 2.49 4.35 -1.56 -0.01 2.48 16 22 C 0.09 1.65 4.76 -4.40 -0.02 1.63 16 23 N -0.31 -6.05 7.17 33.30 0.24 -5.81 16 24 O 0.12 2.03 11.18 17.24 0.19 2.23 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.08 1.40 7.08 -51.93 -0.37 1.04 16 32 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.07 1.58 7.91 -51.93 -0.41 1.17 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 1.07 8.02 -51.92 -0.42 0.65 16 36 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 37 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 38 H 0.03 0.73 6.17 -51.93 -0.32 0.41 16 39 H 0.09 2.17 3.90 -51.93 -0.20 1.96 16 40 H 0.08 1.48 5.60 -51.93 -0.29 1.19 16 41 H 0.07 1.07 7.73 -51.93 -0.40 0.66 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -34.77 323.28 -6.27 -41.03 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.80 Total: -0.32 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.62 Total: 1.81 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.16 Total: -60.48 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.28 Total: -9.66 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.17 Total: 22.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.77 -6.27 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989511525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.382 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds