Wall clock time and date at job start Tue Mar 31 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47353 * 2 1 4 4 C 1.35314 * 126.66364 * 89.99956 * 3 2 1 5 5 C 1.42272 * 103.92269 * 179.97438 * 4 3 2 6 6 C 1.48335 * 126.94226 * 180.02562 * 5 4 3 7 7 O 1.21491 * 119.99533 * 6.19549 * 6 5 4 8 8 N 1.34773 * 119.99992 * 186.19715 * 6 5 4 9 9 C 1.48217 * 119.96592 * 185.82474 * 8 6 5 10 10 C 1.47138 * 110.34200 * 102.47192 * 9 8 6 11 11 C 1.53796 * 111.83988 * 58.29404 * 10 9 8 12 12 N 1.43461 * 107.96022 * 281.66508 * 11 10 9 13 13 C 1.36932 * 118.94432 * 273.61131 * 12 11 10 14 14 H 1.08006 * 119.99971 * 22.78057 * 13 12 11 15 15 C 1.38821 * 120.00356 * 202.78113 * 13 12 11 16 16 N 1.31611 * 119.99858 * 208.22717 * 15 13 12 17 17 Si 1.86792 * 119.99661 * 28.22247 * 15 13 12 18 18 H 1.48503 * 109.47258 * 266.58356 * 17 15 13 19 19 H 1.48505 * 109.47204 * 146.58210 * 17 15 13 20 20 H 1.48502 * 109.47149 * 26.58355 * 17 15 13 21 21 C 1.48863 * 122.11815 * 93.89133 * 12 11 10 22 22 C 1.43614 * 119.97240 * 5.80790 * 8 6 5 23 23 N 1.30984 * 106.12273 * 0.26280 * 5 4 3 24 24 O 1.20906 * 111.43982 * 359.53321 * 23 5 4 25 25 H 1.08995 * 109.46776 * 299.99789 * 1 2 3 26 26 H 1.09004 * 109.47207 * 59.99824 * 1 2 3 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46795 * 240.00124 * 2 1 3 29 29 H 1.08998 * 109.47628 * 120.00316 * 2 1 3 30 30 H 1.08000 * 128.03911 * 359.96015 * 4 3 2 31 31 H 1.09000 * 109.32554 * 342.20112 * 9 8 6 32 32 H 1.09000 * 109.18432 * 222.64699 * 9 8 6 33 33 H 1.09006 * 109.00157 * 297.69006 * 10 9 8 34 34 H 1.08994 * 109.00963 * 178.90409 * 10 9 8 35 35 H 1.09008 * 109.76092 * 162.05387 * 11 10 9 36 36 H 1.08993 * 109.80952 * 41.31253 * 11 10 9 37 37 H 0.97008 * 120.00896 * 5.08860 * 16 15 13 38 38 H 1.09003 * 109.47817 * 80.34654 * 21 12 11 39 39 H 1.09003 * 109.48108 * 200.37873 * 21 12 11 40 40 H 1.08999 * 108.87816 * 31.46178 * 22 8 6 41 41 H 1.09001 * 108.87549 * 149.90575 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3017 2.1825 1.0854 5 6 2.7397 3.4194 0.5355 6 6 3.1674 4.6264 1.2842 7 8 3.2733 4.5849 2.4938 8 7 3.4383 5.7689 0.6227 9 6 3.9886 6.9349 1.3537 10 6 5.4344 7.0562 1.1090 11 6 5.7506 7.2046 -0.3888 12 7 5.6648 5.9048 -0.9899 13 6 6.7673 5.0929 -0.9735 14 1 7.5379 5.2435 -0.2319 15 6 6.8948 4.0763 -1.9102 16 7 7.5812 2.9927 -1.6159 17 14 6.0918 4.2465 -3.5882 18 1 4.7478 3.6155 -3.5601 19 1 6.9333 3.5736 -4.6102 20 1 5.9560 5.6856 -3.9283 21 6 4.4174 5.4126 -1.6362 22 6 3.1939 5.8553 -0.7898 23 7 2.6843 3.2789 -0.7657 24 8 2.2998 2.1751 -1.0750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2062 1.9141 2.1272 31 1 3.8130 6.8067 2.4218 32 1 3.4877 7.8408 1.0121 33 1 5.9349 6.1665 1.4911 34 1 5.8122 7.9300 1.6398 35 1 6.7573 7.6033 -0.5152 36 1 5.0279 7.8745 -0.8543 37 1 7.9357 2.8710 -0.7212 38 1 4.3391 5.8298 -2.6402 39 1 4.4437 4.3245 -1.6957 40 1 2.3436 5.2209 -1.0401 41 1 2.9484 6.8868 -1.0427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989511525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:53 Heat of formation + Delta-G solvation = 43.900582 kcal Electronic energy + Delta-G solvation = -25209.200151 eV Core-core repulsion = 21707.096040 eV Total energy + Delta-G solvation = -3502.104110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -46.15453 -41.34036 -38.89685 -36.24593 -35.82688 -35.30339 -34.03954 -33.36508 -31.10291 -29.49981 -27.79913 -26.02688 -25.10254 -24.94133 -23.84098 -22.69434 -21.63974 -20.16655 -19.34120 -18.82365 -18.51844 -18.01151 -17.50713 -16.85125 -16.46219 -15.93562 -15.67242 -15.44611 -15.32220 -14.98836 -14.74063 -14.59018 -14.35277 -14.07071 -13.77203 -13.50229 -13.43226 -13.16934 -12.69375 -12.58571 -12.26876 -12.10083 -12.00658 -11.85433 -11.75970 -11.63564 -11.57073 -11.38587 -11.32210 -10.60737 -10.41104 -9.80346 -9.01579 -8.63367 -5.47590 0.05137 0.64115 1.40682 1.50767 1.65220 1.68803 1.98568 2.11008 2.53083 2.81676 2.98815 3.35459 3.44332 3.82316 3.90411 4.01046 4.05920 4.09532 4.15157 4.28102 4.35275 4.39801 4.44673 4.51673 4.62527 4.70719 4.77720 4.82604 4.91372 4.97316 4.98857 5.06494 5.10601 5.14559 5.31964 5.39921 5.54316 5.76057 6.14959 6.23274 6.77753 6.87592 7.05978 7.68324 8.00796 8.78960 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.007527 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.550842 B = 3719.099595 C = 4953.369190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.017 4.017 4 C -0.198 4.198 5 C -0.049 4.049 6 C 0.592 3.408 7 O -0.567 6.567 8 N -0.573 5.573 9 C 0.126 3.874 10 C -0.156 4.156 11 C 0.154 3.846 12 N -0.612 5.612 13 C -0.335 4.335 14 H 0.024 0.976 15 C -0.062 4.062 16 N -0.948 5.948 17 Si 1.086 2.914 18 H -0.272 1.272 19 H -0.307 1.307 20 H -0.264 1.264 21 C 0.103 3.897 22 C 0.096 3.904 23 N -0.336 5.336 24 O 0.115 5.885 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.191 0.809 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.015 0.985 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.021 0.387 2.118 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.080 4.080 4 C -0.220 4.220 5 C -0.206 4.206 6 C 0.379 3.621 7 O -0.446 6.446 8 N -0.303 5.303 9 C 0.006 3.994 10 C -0.197 4.197 11 C 0.027 3.973 12 N -0.335 5.335 13 C -0.465 4.465 14 H 0.042 0.958 15 C -0.257 4.257 16 N -0.590 5.590 17 Si 0.912 3.088 18 H -0.198 1.198 19 H -0.236 1.236 20 H -0.189 1.189 21 C -0.022 4.022 22 C -0.029 4.029 23 N -0.038 5.038 24 O 0.040 5.960 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.209 0.791 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.034 0.966 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.839 0.615 0.307 17.852 hybrid contribution 1.200 0.133 2.510 2.785 sum -16.638 0.748 2.817 16.892 Atomic orbital electron populations 1.21787 0.91903 1.04083 1.02522 1.20452 0.97680 0.83296 1.06565 1.25264 1.00202 0.98334 0.84156 1.22602 1.05782 0.91140 1.02521 1.23543 1.07636 0.98750 0.90710 1.17265 0.76938 0.81943 0.85958 1.90675 1.55721 1.84110 1.14075 1.47424 1.60947 1.12594 1.09291 1.20881 0.93937 0.87224 0.97350 1.21681 0.96538 1.00990 1.00480 1.20560 0.99746 0.86045 0.90912 1.44086 1.07747 1.14234 1.67474 1.19984 1.01054 1.12958 1.12481 0.95826 1.27183 0.99949 0.92494 1.06073 1.70977 1.40319 1.25468 1.22215 0.83576 0.75360 0.76592 0.73296 1.19806 1.23594 1.18874 1.22652 0.85577 0.99105 0.94861 1.22042 0.97667 1.03999 0.79232 1.74364 1.13974 0.99886 1.15527 1.84764 1.59402 1.17252 1.34567 0.92261 0.92517 0.88901 0.87871 0.86489 0.79134 0.90219 0.86826 0.96635 0.88581 0.94081 0.90629 0.94710 0.93512 0.92516 0.89010 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.04 -0.66 6.50 29.85 0.19 -0.46 16 3 C -0.02 -0.44 6.73 25.01 0.17 -0.27 16 4 C -0.20 -6.14 10.93 22.60 0.25 -5.89 16 5 C -0.05 -1.89 6.77 42.96 0.29 -1.60 16 6 C 0.59 24.57 7.68 86.93 0.67 25.23 16 7 O -0.57 -25.57 16.38 -3.69 -0.06 -25.63 16 8 N -0.57 -21.13 2.46 -833.37 -2.05 -23.18 16 9 C 0.13 3.95 5.73 84.23 0.48 4.43 16 10 C -0.16 -5.55 5.64 29.04 0.16 -5.39 16 11 C 0.15 5.94 5.63 87.21 0.49 6.43 16 12 N -0.61 -29.49 2.34 -697.36 -1.63 -31.12 16 13 C -0.34 -19.89 9.51 84.04 0.80 -19.09 16 14 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 15 C -0.06 -3.78 5.03 84.87 0.43 -3.35 16 16 N -0.95 -62.74 13.70 21.65 0.30 -62.44 16 17 Si 1.09 54.55 24.53 68.60 1.68 56.23 16 18 H -0.27 -12.81 6.71 99.48 0.67 -12.14 16 19 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 20 H -0.26 -12.06 6.81 99.48 0.68 -11.38 16 21 C 0.10 4.46 4.35 86.68 0.38 4.84 16 22 C 0.10 3.28 4.76 87.68 0.42 3.70 16 23 N -0.34 -12.83 7.17 -49.51 -0.35 -13.18 16 24 O 0.12 3.83 11.18 71.85 0.80 4.63 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.08 2.58 7.08 -2.39 -0.02 2.56 16 32 H 0.11 2.56 8.05 -2.39 -0.02 2.54 16 33 H 0.01 0.69 7.91 -2.38 -0.02 0.68 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.04 1.65 8.02 -2.38 -0.02 1.64 16 36 H 0.08 2.35 7.59 -2.39 -0.02 2.33 16 37 H 0.24 16.54 8.73 -92.70 -0.81 15.73 16 38 H 0.05 1.91 6.17 -2.39 -0.01 1.90 16 39 H 0.06 2.82 3.90 -2.39 -0.01 2.81 16 40 H 0.09 3.05 5.60 -2.39 -0.01 3.03 16 41 H 0.11 2.83 7.73 -2.39 -0.02 2.81 16 Total: -1.00 -80.47 323.28 5.06 -75.41 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.93 Total: 11.72 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.44 Total: 7.57 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -3.74 Total: -129.92 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.74 Total: -21.00 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.68 Total: 56.23 kcal Total: -80.47 5.06 -75.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989511525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.312 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds