Wall clock time and date at job start Tue Mar 31 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50698 * 126.80687 * 180.20620 * 4 3 2 6 6 C 1.50696 * 109.47228 * 124.99886 * 5 4 3 7 7 O 1.21280 * 120.00235 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99652 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63442 * 359.72502 * 8 6 5 10 10 C 1.52760 * 109.01131 * 233.58062 * 9 8 6 11 11 C 1.53039 * 109.37918 * 305.58673 * 10 9 8 12 12 N 1.46502 * 109.44360 * 181.25044 * 11 10 9 13 13 C 1.36943 * 119.99990 * 84.94378 * 12 11 10 14 14 H 1.08000 * 119.99744 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00137 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46983 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47213 * 119.99831 * 17 15 13 20 20 H 1.48503 * 109.47051 * 240.00555 * 17 15 13 21 21 C 1.53039 * 109.54011 * 61.24467 * 11 10 9 22 22 C 1.46931 * 120.62991 * 180.02562 * 8 6 5 23 23 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 24 24 O 1.20926 * 111.60451 * 359.97438 * 23 4 3 25 25 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 26 26 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 27 27 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 28 28 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47011 * 245.00415 * 5 4 3 30 30 H 1.08995 * 109.46627 * 4.99965 * 5 4 3 31 31 H 1.09008 * 109.58418 * 353.41769 * 9 8 6 32 32 H 1.09002 * 109.58858 * 113.83523 * 9 8 6 33 33 H 1.08999 * 109.56414 * 185.55130 * 10 9 8 34 34 H 1.09005 * 109.38364 * 65.51356 * 10 9 8 35 35 H 1.08996 * 109.46272 * 301.21250 * 11 10 9 36 36 H 0.97004 * 120.00237 * 264.93736 * 12 11 10 37 37 H 0.97002 * 120.00217 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.49894 * 178.68454 * 21 11 10 39 39 H 1.08999 * 109.52822 * 58.59184 * 21 11 10 40 40 H 1.08999 * 109.58579 * 246.16100 * 22 8 6 41 41 H 1.09006 * 109.58034 * 6.44503 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0132 6 6 5.7609 0.8509 1.1810 7 8 5.3453 -0.0048 1.9333 8 7 6.9744 1.3993 1.3888 9 6 7.4945 2.4317 0.4821 10 6 8.8737 2.0058 -0.0180 11 6 9.7782 1.7071 1.1797 12 7 11.1102 1.3273 0.7023 13 6 12.0346 2.2947 0.4107 14 1 11.7816 3.3375 0.5324 15 6 13.2968 1.9348 -0.0412 16 7 13.6049 0.6639 -0.1900 17 14 14.5575 3.2544 -0.4396 18 1 13.9674 4.5941 -0.1906 19 1 15.7532 3.0729 0.4221 20 1 14.9544 3.1452 -1.8664 21 6 9.1829 0.5581 1.9968 22 6 7.8051 0.9713 2.5226 23 7 3.4764 -0.7563 0.0043 24 8 2.3095 -1.0736 -0.0015 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 2.0344 2.1271 0.0004 29 1 5.4589 1.1101 -0.9157 30 1 4.7157 2.3668 0.1024 31 1 6.8194 2.5471 -0.3659 32 1 7.5787 3.3783 1.0161 33 1 9.3103 2.8084 -0.6124 34 1 8.7753 1.1105 -0.6320 35 1 9.8568 2.5956 1.8061 36 1 11.3373 0.3906 0.5927 37 1 14.4868 0.4124 -0.5061 38 1 9.8395 0.3304 2.8365 39 1 9.0812 -0.3240 1.3646 40 1 7.9152 1.7960 3.2267 41 1 7.3335 0.1249 3.0221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990370926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:43 Heat of formation + Delta-G solvation = 33.956641 kcal Electronic energy + Delta-G solvation = -23157.748618 eV Core-core repulsion = 19655.213306 eV Total energy + Delta-G solvation = -3502.535312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.03016 -40.06814 -37.45523 -34.80391 -34.50155 -33.58521 -32.15368 -31.09069 -29.69641 -28.79658 -28.00746 -24.90076 -23.33012 -22.99912 -22.68323 -21.05501 -19.90740 -18.69289 -17.83869 -17.42308 -17.10528 -16.83821 -15.78696 -15.48631 -14.85219 -14.63566 -14.07658 -13.85286 -13.80420 -13.62814 -13.57949 -13.38101 -13.25043 -13.11668 -12.62152 -12.51729 -12.16871 -11.93183 -11.59229 -11.21603 -10.98622 -10.89483 -10.84281 -10.50417 -10.31727 -10.22415 -9.84668 -9.71812 -9.65348 -9.44813 -8.94141 -8.50999 -7.00530 -5.80055 -3.09552 1.36087 2.06624 2.65529 2.96139 3.10735 3.40278 3.45521 3.48196 3.96555 4.20646 4.54522 4.57495 4.77578 4.90294 4.95830 5.02566 5.03377 5.20024 5.26753 5.31480 5.33376 5.38864 5.43417 5.51506 5.60294 5.63952 5.70673 5.85698 5.93125 5.99500 6.20861 6.34792 6.37889 6.48975 6.60471 6.86904 7.01446 7.47941 7.66009 8.21717 8.22292 8.38038 9.49258 10.06912 10.41471 11.42517 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.039828 B = 0.002709 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.857268 B =10331.920531 C =10482.579124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.229 4.229 4 C 0.029 3.971 5 C -0.062 4.062 6 C 0.517 3.483 7 O -0.536 6.536 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.153 4.153 11 C 0.179 3.821 12 N -0.725 5.725 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.139 4.139 22 C 0.117 3.883 23 N -0.335 5.335 24 O 0.104 5.896 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.170 0.830 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.582 3.705 0.159 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.251 4.251 4 C -0.131 4.131 5 C -0.103 4.103 6 C 0.303 3.697 7 O -0.412 6.412 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.194 4.194 11 C 0.069 3.931 12 N -0.365 5.365 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.178 4.178 22 C -0.005 4.005 23 N -0.036 5.036 24 O 0.034 5.966 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.188 0.812 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.797 2.378 0.551 24.917 hybrid contribution 0.692 1.296 -0.446 1.535 sum -24.105 3.674 0.105 24.384 Atomic orbital electron populations 1.20307 0.84165 1.04571 1.03943 1.24475 0.96388 0.86376 1.03180 1.22333 0.91102 1.00916 1.10720 1.22819 0.96020 0.90154 1.04095 1.20041 0.90420 1.00255 0.99556 1.20215 0.81619 0.81772 0.86080 1.90718 1.71455 1.31464 1.47588 1.48143 1.16484 1.40217 1.29132 1.21812 0.96838 0.90350 0.92707 1.22612 0.93483 1.02156 1.01143 1.20156 0.85822 0.95031 0.92083 1.42456 1.08358 1.06773 1.78894 1.19272 0.92365 0.88724 1.36723 0.91102 1.24765 0.97830 0.96077 1.02333 1.69675 1.21188 1.14408 1.52698 0.86131 0.81722 0.80753 0.77649 1.20554 1.21875 1.21884 1.22200 0.94813 0.99865 1.00937 1.21602 0.90768 1.00515 0.87649 1.73915 0.96235 1.16228 1.17196 1.84869 1.11397 1.33189 1.67131 0.89517 0.89870 0.89197 0.81224 0.86843 0.86718 0.90551 0.91267 0.90499 0.92174 0.93380 0.78247 0.93519 0.90527 0.91837 0.91569 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 36.01 0.38 0.05 16 2 C -0.04 -0.38 7.49 -35.30 -0.26 -0.64 16 3 C -0.23 -2.19 11.05 -39.38 -0.44 -2.63 16 4 C 0.03 0.37 6.10 -82.10 -0.50 -0.13 16 5 C -0.06 -0.69 4.64 -29.04 -0.13 -0.83 16 6 C 0.52 7.70 7.69 -10.99 -0.08 7.61 16 7 O -0.54 -10.09 15.01 5.56 0.08 -10.00 16 8 N -0.61 -8.50 2.98 -173.05 -0.52 -9.02 16 9 C 0.11 1.30 6.31 -3.94 -0.02 1.27 16 10 C -0.15 -2.49 5.64 -26.83 -0.15 -2.64 16 11 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 12 N -0.72 -17.75 5.12 -53.39 -0.27 -18.02 16 13 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 C -0.14 -2.34 5.55 -26.63 -0.15 -2.49 16 22 C 0.12 1.73 6.43 -3.73 -0.02 1.70 16 23 N -0.33 -5.12 11.47 33.42 0.38 -4.74 16 24 O 0.10 1.34 11.20 17.19 0.19 1.53 16 25 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.11 1.14 7.68 -51.93 -0.40 0.74 16 30 H 0.11 0.88 7.95 -51.93 -0.41 0.46 16 31 H 0.08 0.72 5.94 -51.92 -0.31 0.41 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.38 10.18 7.80 -40.82 -0.32 9.87 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -34.92 341.14 -7.11 -42.03 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.99 Total: 5.95 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.82 Total: -2.63 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.32 Total: -59.05 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.92 -7.11 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990370926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.985 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds