Wall clock time and date at job start Tue Mar 31 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50698 * 126.80687 * 180.20620 * 4 3 2 6 6 C 1.50696 * 109.47228 * 124.99886 * 5 4 3 7 7 O 1.21280 * 120.00235 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99652 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63442 * 359.72502 * 8 6 5 10 10 C 1.52760 * 109.01131 * 233.58062 * 9 8 6 11 11 C 1.53039 * 109.37918 * 305.58673 * 10 9 8 12 12 N 1.46502 * 109.44360 * 181.25044 * 11 10 9 13 13 C 1.36943 * 119.99990 * 84.94378 * 12 11 10 14 14 H 1.08000 * 119.99744 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00137 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46983 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47213 * 119.99831 * 17 15 13 20 20 H 1.48503 * 109.47051 * 240.00555 * 17 15 13 21 21 C 1.53039 * 109.54011 * 61.24467 * 11 10 9 22 22 C 1.46931 * 120.62991 * 180.02562 * 8 6 5 23 23 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 24 24 O 1.20926 * 111.60451 * 359.97438 * 23 4 3 25 25 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 26 26 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 27 27 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 28 28 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47011 * 245.00415 * 5 4 3 30 30 H 1.08995 * 109.46627 * 4.99965 * 5 4 3 31 31 H 1.09008 * 109.58418 * 353.41769 * 9 8 6 32 32 H 1.09002 * 109.58858 * 113.83523 * 9 8 6 33 33 H 1.08999 * 109.56414 * 185.55130 * 10 9 8 34 34 H 1.09005 * 109.38364 * 65.51356 * 10 9 8 35 35 H 1.08996 * 109.46272 * 301.21250 * 11 10 9 36 36 H 0.97004 * 120.00237 * 264.93736 * 12 11 10 37 37 H 0.97002 * 120.00217 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.49894 * 178.68454 * 21 11 10 39 39 H 1.08999 * 109.52822 * 58.59184 * 21 11 10 40 40 H 1.08999 * 109.58579 * 246.16100 * 22 8 6 41 41 H 1.09006 * 109.58034 * 6.44503 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0132 6 6 5.7609 0.8509 1.1810 7 8 5.3453 -0.0048 1.9333 8 7 6.9744 1.3993 1.3888 9 6 7.4945 2.4317 0.4821 10 6 8.8737 2.0058 -0.0180 11 6 9.7782 1.7071 1.1797 12 7 11.1102 1.3273 0.7023 13 6 12.0346 2.2947 0.4107 14 1 11.7816 3.3375 0.5324 15 6 13.2968 1.9348 -0.0412 16 7 13.6049 0.6639 -0.1900 17 14 14.5575 3.2544 -0.4396 18 1 13.9674 4.5941 -0.1906 19 1 15.7532 3.0729 0.4221 20 1 14.9544 3.1452 -1.8664 21 6 9.1829 0.5581 1.9968 22 6 7.8051 0.9713 2.5226 23 7 3.4764 -0.7563 0.0043 24 8 2.3095 -1.0736 -0.0015 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 2.0344 2.1271 0.0004 29 1 5.4589 1.1101 -0.9157 30 1 4.7157 2.3668 0.1024 31 1 6.8194 2.5471 -0.3659 32 1 7.5787 3.3783 1.0161 33 1 9.3103 2.8084 -0.6124 34 1 8.7753 1.1105 -0.6320 35 1 9.8568 2.5956 1.8061 36 1 11.3373 0.3906 0.5927 37 1 14.4868 0.4124 -0.5061 38 1 9.8395 0.3304 2.8365 39 1 9.0812 -0.3240 1.3646 40 1 7.9152 1.7960 3.2267 41 1 7.3335 0.1249 3.0221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990370926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:42 Heat of formation + Delta-G solvation = 10.108998 kcal Electronic energy + Delta-G solvation = -23158.782730 eV Core-core repulsion = 19655.213306 eV Total energy + Delta-G solvation = -3503.569424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.87674 -41.24409 -38.81738 -36.16550 -35.66073 -34.25212 -33.87011 -32.36525 -31.17187 -30.04614 -28.55610 -26.55989 -24.49601 -24.31942 -23.89654 -22.21302 -21.09868 -19.83399 -19.07099 -18.74564 -18.30433 -17.87829 -16.87662 -16.70968 -16.56184 -15.54105 -15.47809 -15.34688 -15.01327 -14.89221 -14.50007 -14.44199 -13.96419 -13.90133 -13.80405 -13.32518 -13.29475 -13.12804 -13.07655 -12.87564 -12.64389 -12.19795 -12.10397 -12.02090 -11.98327 -11.70676 -11.32421 -11.23268 -10.95407 -10.72911 -10.18835 -9.70242 -9.01511 -7.93403 -5.22569 0.61965 1.25045 1.48286 1.48982 1.54514 1.58893 2.02625 2.34575 2.56799 3.16611 3.40097 3.42973 3.67401 3.80973 3.92997 4.06632 4.16095 4.17808 4.23278 4.32616 4.34579 4.40335 4.52676 4.63553 4.67707 4.77735 4.79103 4.81665 4.86063 4.95085 5.01551 5.04599 5.09229 5.28785 5.32238 5.49436 5.54204 5.61968 6.28007 6.37531 7.10357 7.33703 7.42272 8.09448 8.32304 9.30670 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.039828 B = 0.002709 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.857268 B =10331.920531 C =10482.579124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.040 4.040 3 C -0.230 4.230 4 C 0.011 3.989 5 C -0.058 4.058 6 C 0.512 3.488 7 O -0.582 6.582 8 N -0.606 5.606 9 C 0.113 3.887 10 C -0.144 4.144 11 C 0.173 3.827 12 N -0.741 5.741 13 C -0.231 4.231 14 H 0.083 0.917 15 C -0.082 4.082 16 N -0.974 5.974 17 Si 0.972 3.028 18 H -0.260 1.260 19 H -0.298 1.298 20 H -0.296 1.296 21 C -0.128 4.128 22 C 0.124 3.876 23 N -0.390 5.390 24 O 0.081 5.919 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.207 0.793 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.368 0.632 37 H 0.249 0.751 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.962 6.839 -0.182 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C -0.251 4.251 4 C -0.148 4.148 5 C -0.098 4.098 6 C 0.300 3.700 7 O -0.462 6.462 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.184 4.184 11 C 0.065 3.935 12 N -0.379 5.379 13 C -0.363 4.363 14 H 0.101 0.899 15 C -0.274 4.274 16 N -0.626 5.626 17 Si 0.802 3.198 18 H -0.184 1.184 19 H -0.225 1.225 20 H -0.224 1.224 21 C -0.167 4.167 22 C 0.001 3.999 23 N -0.095 5.095 24 O 0.014 5.986 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.224 0.776 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.244 5.561 0.211 27.806 hybrid contribution 1.322 0.302 -0.296 1.388 sum -25.922 5.864 -0.085 26.577 Atomic orbital electron populations 1.20561 0.80811 1.05924 1.05515 1.25410 0.98185 0.85480 1.01258 1.22780 0.89503 1.02606 1.10257 1.23342 0.97886 0.89927 1.03615 1.20198 0.89249 1.02390 0.97931 1.20912 0.81784 0.80816 0.86458 1.90702 1.72536 1.33473 1.49506 1.48229 1.16280 1.40377 1.28954 1.21921 0.94784 0.90278 0.93930 1.22397 0.95476 1.01233 0.99338 1.20430 0.84061 0.95670 0.93351 1.42716 1.10366 1.05665 1.79190 1.19694 0.92594 0.89615 1.34417 0.89940 1.25599 1.00141 0.97995 1.03659 1.69844 1.21296 1.16523 1.54891 0.85075 0.78934 0.79129 0.76658 1.18446 1.22548 1.22395 1.22052 0.96162 0.98437 1.00083 1.21466 0.89159 1.00976 0.88333 1.73908 0.97591 1.18132 1.19864 1.84797 1.11322 1.34741 1.67707 0.87651 0.89406 0.86904 0.77645 0.85646 0.82326 0.86755 0.88758 0.90979 0.94029 0.92810 0.80056 0.94251 0.91137 0.93823 0.89367 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 71.24 0.74 0.31 16 2 C -0.04 -0.68 7.49 25.04 0.19 -0.49 16 3 C -0.23 -3.78 11.05 22.40 0.25 -3.54 16 4 C 0.01 0.27 6.10 43.58 0.27 0.53 16 5 C -0.06 -1.12 4.64 29.10 0.14 -0.99 16 6 C 0.51 14.46 7.69 87.66 0.67 15.13 16 7 O -0.58 -22.04 15.01 -3.03 -0.05 -22.08 16 8 N -0.61 -15.71 2.98 -819.80 -2.44 -18.15 16 9 C 0.11 2.35 6.31 86.22 0.54 2.90 16 10 C -0.14 -4.43 5.64 30.53 0.17 -4.26 16 11 C 0.17 6.43 2.73 45.02 0.12 6.55 16 12 N -0.74 -36.66 5.12 -322.81 -1.65 -38.32 16 13 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 14 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 15 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 16 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 17 Si 0.97 45.50 29.55 68.60 2.03 47.52 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 21 C -0.13 -4.35 5.55 30.66 0.17 -4.18 16 22 C 0.12 3.53 6.43 86.35 0.56 4.08 16 23 N -0.39 -12.08 11.47 -49.54 -0.57 -12.64 16 24 O 0.08 2.11 11.20 71.69 0.80 2.91 16 25 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.13 2.14 7.68 -2.38 -0.02 2.12 16 30 H 0.16 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.11 1.59 5.94 -2.38 -0.01 1.58 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 36 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.37 7.00 -2.38 -0.02 2.35 16 Total: -1.00 -79.95 341.14 3.84 -76.11 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.32 Total: 24.20 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.12 Total: 0.24 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -4.38 Total: -128.90 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.76 Total: -19.17 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.95 3.84 -76.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990370926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.218 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds